View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9684_low_10 (Length: 370)
Name: NF9684_low_10
Description: NF9684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9684_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 17 - 366
Target Start/End: Original strand, 33199271 - 33199622
Alignment:
| Q |
17 |
caagaaaagctatttgtcctacgatatccagtataaagagattctctggcaggccacgaaaaaacccaaactccattggggtgaagaaagatgagtatac |
116 |
Q |
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| T |
33199271 |
caagaaaagctatttgtcctacgatatccagtataaagagattctctggcaggccacgaaaaaacccaaactccattggggtgaagaaagatgagtatac |
33199370 |
T |
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| Q |
117 |
tgcccataacaatataaatttgagccatgcacgataccacctgcattgttcattaatatcagcatcaaccaatttaagtcttcatttatttgaggcaaga |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33199371 |
tgcccataacaatataaatttgagccatgcacgataccacctgcattgttcattaatatcagcatcaaccaatttaagtcttcatatatttgaggcaaga |
33199470 |
T |
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| Q |
217 |
catttatcaatacttgagggacttaagcaagagagtaaacaaactcaaaccgcactaac-----nnnnnnnnnnnnctcaaaccgtaatatcaaacatag |
311 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
33199471 |
catttatcaatacttgagggactaaagcaagagagtaaacaaactcaaaccgcactaacaaaaaaaaaaaaaaaaactcaaaccg---tatcaaacatag |
33199567 |
T |
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| Q |
312 |
aatacacagtggtgtttgaaacaaagataattaaaacatgaccgaacaccaaact |
366 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33199568 |
aatacagagtggtgtttgaaacaaagataattaaaacatgaccgaacatcaaact |
33199622 |
T |
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