View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9684_low_12 (Length: 360)
Name: NF9684_low_12
Description: NF9684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9684_low_12 |
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| [»] scaffold0054 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 4 - 344
Target Start/End: Original strand, 13795615 - 13795956
Alignment:
| Q |
4 |
agtttggtgtttctttgcttgttctccatttatgctatagccatccatgtaatctctaagcaatatccaacttatagaaaccattttagtagtgatcaca |
103 |
Q |
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| T |
13795615 |
agtttggcgtttctttgcttattctccatttacgctatagccatccatgtaatctctaagcaatatccaacttataaaaaccattttagtagtgatcaca |
13795714 |
T |
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| Q |
104 |
taatgagtaaatttgtgatttgtggcctttgtcgccttaaatcatgaattgtatgctatagtgagatcacactagaaatttatgtaag-ttcttacttat |
202 |
Q |
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| T |
13795715 |
taatgagtaaatctgtgatttgtggcctttgttgccttaaatcatgaattgtatgctatagtgagatcacactagaaatttatgtaagtttcttacttat |
13795814 |
T |
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| Q |
203 |
cttattgataattgcttcatttttaaagatgcaaattctgtgcattttaatgagaatttggtttgaagtttttgttgttatcggtgtatatctaagtcta |
302 |
Q |
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| T |
13795815 |
cttattgataattgcttcatttttaaagatgcaaattctgtgcattttaatgagaatttggtttgaagtttttgttgttatcagtgtatatctaagtcta |
13795914 |
T |
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| Q |
303 |
tattgtgtctttgtaacctgtctcattaaccgatgtagaatc |
344 |
Q |
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| T |
13795915 |
tattgtgtctttgtaagctgtctcattaactgatgtagaatc |
13795956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 4 - 222
Target Start/End: Original strand, 27364 - 27583
Alignment:
| Q |
4 |
agtttggtgtttctttgcttgttctccatttatgctatagccatccatgtaatctctaagcaatatccaacttatagaaaccattttagtagtgatcaca |
103 |
Q |
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| T |
27364 |
agtttggtgtttctttgcttattctccatttacgctatagccatccatgtaatctataagcaatatccaatttatagaaaccattttagtagggatcaca |
27463 |
T |
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| Q |
104 |
taatgagtaaatttgtgatttgtggcctttgtcgccttaaatcatgaattgtatgctatagtgagatcacactagaaatttatgtaag-ttcttacttat |
202 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27464 |
taatgagtaaatttgtgatttgtgacctttgttgccttaaatcatgaattgtatgctatagtgagatcacactagaaatttatgtaagtttcttacttat |
27563 |
T |
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| Q |
203 |
cttattgataattgcttcat |
222 |
Q |
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| T |
27564 |
cttattgataattgcttcat |
27583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 292 - 344
Target Start/End: Original strand, 27591 - 27643
Alignment:
| Q |
292 |
atctaagtctatattgtgtctttgtaacctgtctcattaaccgatgtagaatc |
344 |
Q |
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| T |
27591 |
atctaagtctatattgtgtctttgtaagctgtctcattaattgatgtagaatc |
27643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 343
Target Start/End: Original strand, 35430741 - 35430809
Alignment:
| Q |
275 |
tgttgttatcggtgtatatctaagtctatattgtgtctttgtaacctgtctcattaaccgatgtagaat |
343 |
Q |
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| T |
35430741 |
tgttgttgtcgacgtatatttaagtccatattgtgtctttgtaagctgactaattaactgatgtagaat |
35430809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 122
Target Start/End: Original strand, 35430624 - 35430662
Alignment:
| Q |
84 |
ccattttagtagtgatcacataatgagtaaatttgtgat |
122 |
Q |
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| T |
35430624 |
ccattttagtagtgatcaaataatgactaaatttgtgat |
35430662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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