View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9684_low_2 (Length: 579)

Name: NF9684_low_2
Description: NF9684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9684_low_2
NF9684_low_2
[»] chr4 (4 HSPs)
chr4 (18-469)||(31737190-31737638)
chr4 (274-377)||(13852294-13852397)
chr4 (535-566)||(31737093-31737124)
chr4 (209-251)||(55351269-55351311)
[»] chr6 (2 HSPs)
chr6 (253-461)||(8247039-8247247)
chr6 (314-350)||(14457238-14457274)
[»] chr7 (2 HSPs)
chr7 (246-392)||(12829238-12829388)
chr7 (174-251)||(44162403-44162480)
[»] chr1 (3 HSPs)
chr1 (250-397)||(40197872-40198019)
chr1 (198-251)||(40388157-40388210)
chr1 (313-429)||(40387947-40388063)
[»] chr5 (2 HSPs)
chr5 (247-413)||(29299614-29299780)
chr5 (210-247)||(10428279-10428316)
[»] scaffold0263 (1 HSPs)
scaffold0263 (209-251)||(8633-8675)
[»] chr8 (2 HSPs)
chr8 (253-395)||(4901708-4901850)
chr8 (246-428)||(25659795-25659977)
[»] chr2 (1 HSPs)
chr2 (177-251)||(33482996-33483070)
[»] chr3 (1 HSPs)
chr3 (198-251)||(49454579-49454632)


Alignment Details
Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 18 - 469
Target Start/End: Complemental strand, 31737638 - 31737190
Alignment:
Q  18 gatgatggttgggttactttgccttcggatgtgaggaaggccattgtggattttttcactaaccatgtggatgatattgcgtgggagaggcctaagttgg 117  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31737638 gatgatggttgggttactttgccttcggatgtgaggaaggccgttgtggattttttcactaaccatgtggatgatattgcgtgggagaggcctaagttgg 31737539  T
Q  118 atggagtgccgtttgagaggctttctttggaggaaaatgaggaattgattattaagcctttttcgttaatggagatagaagcggtggtgagagatagtga 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  31737538 atggagtgccgtttgagaggctttctttggaggaaaatgaggaattgatta---agcctttttcgttaatggagatagaagcggtggtgagagatagtga 31737442  T
Q  218 cggtaataaaagtccgggtccggatggttttaatcaaggatgaggtgaggattttatttgatcaattccatgctaatgaggtaataccaaaagggatgtt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31737441 cggtaataaaagtccgggtccggatggttttaatcaaggatgaggtgaggattttatttgatcaattccatgctaatgaggtaataccaaaagggatgtt 31737342  T
Q  318 agcttattttgttgctttgattccaaaagtttcatctccgatggctttgaaggattatcgtcctatatctttgcttggttgtttatacaaattacttgcc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31737341 agcttattttgttgctttgattccaaaagtttcatctccgatggctttgaaggattatcgtcctatatctttgattggttgtttatacaaattacttgcc 31737242  T
Q  418 aaggttctagcaaggcgtttggccggggtgatgaattcgattatacaaatta 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31737241 aaggttctagcaaggcgtttggccggggtgatgaattcgattatacaaatta 31737190  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 274 - 377
Target Start/End: Original strand, 13852294 - 13852397
Alignment:
Q  274 tttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaagtttcatctccgatggctttgaaggatt 373  Q
    ||||||||||| ||||||||||||||  |||||||    ||||| || |||||||||||||| ||||||||||| || || ||  |||  ||||||||||    
T  13852294 tttgatcaatttcatgctaatgaggtgctaccaaagtccatgttggcgtattttgttgctttaattccaaaagtgtcttcacctttggagttgaaggatt 13852393  T
Q  374 atcg 377  Q
    ||||    
T  13852394 atcg 13852397  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 535 - 566
Target Start/End: Complemental strand, 31737124 - 31737093
Alignment:
Q  535 tactgtatgggtgcgctactgctgtctgtgct 566  Q
    ||||||||||||||||||||||||||||||||    
T  31737124 tactgtatgggtgcgctactgctgtctgtgct 31737093  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 251
Target Start/End: Original strand, 55351269 - 55351311
Alignment:
Q  209 agatagtgacggtaataaaagtccgggtccggatggttttaat 251  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||    
T  55351269 agatagtgatggtaataaaagcccgggtccggatggatttaat 55351311  T

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Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 253 - 461
Target Start/End: Complemental strand, 8247247 - 8247039
Alignment:
Q  253 aaggatgaggtgaggattttatttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaagtttcat 352  Q
    ||||||||||||| |||||| || |||||||| |||||||||||| | ||| ||||||| ||||| |  ||||||||||| |||||  | ||||||||||    
T  8247247 aaggatgaggtgatgattttgttcgatcaatttcatgctaatgagattatatcaaaaggaatgttggtgtattttgttgcattgatatcgaaagtttcat 8247148  T
Q  353 ctccgatggctttgaaggattatcgtcctatatctttgcttggttgtttatacaaattacttgccaaggttctagcaaggcgtttggccggggtgatgaa 452  Q
    |||| |||||| |||||||||| ||  |||| || ||||| ||| |||||||||||||||| ||||| ||| || ||||||||||||| ||  | |||||    
T  8247147 ctccaatggctatgaaggattaccgctctatttcattgctaggtagtttatacaaattactcgccaaagttttaacaaggcgtttggcgggaattatgaa 8247048  T
Q  453 ttcgattat 461  Q
    ||| |||||    
T  8247047 ttctattat 8247039  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 350
Target Start/End: Original strand, 14457238 - 14457274
Alignment:
Q  314 tgttagcttattttgttgctttgattccaaaagtttc 350  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  14457238 tgttggcttattttgtggctttgattccaaaagtttc 14457274  T

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Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 246 - 392
Target Start/End: Complemental strand, 12829388 - 12829238
Alignment:
Q  246 tttaatcaaggatgaggtgaggattttat----ttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattcc 341  Q
    ||||||||||||||||||| ||||| |||    |||||||||| ||||  ||||||| ||| ||||||||  ||||||| ||||||||||||||||||||    
T  12829388 tttaatcaaggatgaggtgcggattatatatgtttgatcaatttcatgggaatgaggaaatcccaaaaggtttgttagcgtattttgttgctttgattcc 12829289  T
Q  342 aaaagtttcatctccgatggctttgaaggattatcgtcctatatctttgct 392  Q
      ||||||||||||| | ||||||||||||||| |  ||||| ||||||||    
T  12829288 ggaagtttcatctcctagggctttgaaggattaccaccctatttctttgct 12829238  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 251
Target Start/End: Original strand, 44162403 - 44162480
Alignment:
Q  174 cctttttcgttaatggagatagaagcggtggtgagagatagtgacggtaataaaagtccgggtccggatggttttaat 251  Q
    |||||||| ||| |||| ||||| |||||||| | |||||| || ||  ||||||| ||||| |||||||||||||||    
T  44162403 cctttttccttattggaaatagaggcggtggttaaagatagcgatggggataaaagcccgggaccggatggttttaat 44162480  T

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Target: chr1 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 250 - 397
Target Start/End: Complemental strand, 40198019 - 40197872
Alignment:
Q  250 atcaaggatgaggtgaggattttatttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaagttt 349  Q
    ||||| ||||||||||| ||| | ||||| ||||| |||| |||||||||| | || |  |||||||| |||||||||||||| || ||||| |||||||    
T  40198019 atcaaagatgaggtgagaattatgtttgaccaatttcatggtaatgaggtatttccgagggggatgttggcttattttgttgcgttaattcctaaagttt 40197920  T
Q  350 catctccgatggctttgaaggattatcgtcctatatctttgcttggtt 397  Q
      || || |||||||||| ||||| ||  || || |||||||||||||    
T  40197919 tgtcccctatggctttgagggattttcaaccgatttctttgcttggtt 40197872  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 40388210 - 40388157
Alignment:
Q  198 gcggtggtgagagatagtgacggtaataaaagtccgggtccggatggttttaat 251  Q
    |||||||| ||||||||||| ||||||||||||||| |||||||||||||||||    
T  40388210 gcggtggttagagatagtgatggtaataaaagtccgtgtccggatggttttaat 40388157  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 313 - 429
Target Start/End: Complemental strand, 40388063 - 40387947
Alignment:
Q  313 atgttagcttattttgttgctttgattccaaaagtttcatctccgatggctttgaaggattatcgtcctatatctttgcttggttgtttatacaaattac 412  Q
    ||||| |||| ||||||  |||||||||| ||||| |||||| |||||| ||||||||||| | | || ||||  ||||| || || ||||| |||||||    
T  40388063 atgttggctttttttgtgactttgattcccaaagtgtcatcttcgatggatttgaaggattttaggccaatattcttgctaggatgcttatataaattac 40387964  T
Q  413 ttgccaaggttctagca 429  Q
    | ||||||||| |||||    
T  40387963 tagccaaggttttagca 40387947  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 247 - 413
Target Start/End: Original strand, 29299614 - 29299780
Alignment:
Q  247 ttaatcaaggatgaggtgaggattttatttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaag 346  Q
    ||||| |||||||||||||||||| | ||||||||||| ||||||||||||||  | |||| | |  | |||||||||||||| |||||||| ||||| |    
T  29299614 ttaatgaaggatgaggtgaggattatgtttgatcaattacatgctaatgaggtggtgccaagaagtttattagcttattttgtcgctttgatcccaaagg 29299713  T
Q  347 tttcatctccgatggctttgaaggattatcgtcctatatctttgcttggttgtttatacaaattact 413  Q
    | || || ||||||   |||||||| | |||||| || ||| | |||||| || | ||||| |||||    
T  29299714 tgtcctcaccgatgatgttgaaggactttcgtccaatttctctacttggtagtatttacaagttact 29299780  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 247
Target Start/End: Original strand, 10428279 - 10428316
Alignment:
Q  210 gatagtgacggtaataaaagtccgggtccggatggttt 247  Q
    |||||||||||  |||||||||||||||||||||||||    
T  10428279 gatagtgacggcgataaaagtccgggtccggatggttt 10428316  T

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Target: scaffold0263 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 209 - 251
Target Start/End: Complemental strand, 8675 - 8633
Alignment:
Q  209 agatagtgacggtaataaaagtccgggtccggatggttttaat 251  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  8675 agatagtgatggtaataaaagtccgggtccggatggttttaat 8633  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 253 - 395
Target Start/End: Original strand, 4901708 - 4901850
Alignment:
Q  253 aaggatgaggtgaggattttatttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaagtttcat 352  Q
    |||||||| || || ||| | ||||||||||| || |||||||||||  |||| ||  | ||||||||||| ||||| ||||| ||||||||  |||| |    
T  4901708 aaggatgaagttagaattatgtttgatcaatttcacgctaatgaggttttaccgaagagtatgttagcttactttgtagctttaattccaaagatttctt 4901807  T
Q  353 ctccgatggctttgaaggattatcgtcctatatctttgcttgg 395  Q
    | ||  ||||||| ||||||| |||||| || |||||||||||    
T  4901808 cccctttggcttttaaggattttcgtcccatttctttgcttgg 4901850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 246 - 428
Target Start/End: Original strand, 25659795 - 25659977
Alignment:
Q  246 tttaatcaaggatgaggtgaggattttatttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaa 345  Q
    |||||| || ||||| ||||| ||||| ||||| ||||| ||||||||||||||  | || | ||| ||||| |||||||||||  |||| ||| | |||    
T  25659795 tttaattaaagatgaagtgagaattttgtttgaccaatttcatgctaatgaggtgttgccgagaggtatgttggcttattttgtgactttaattactaaa 25659894  T
Q  346 gtttcatctccgatggctttgaaggattatcgtcctatatctttgcttggttgtttatacaaattacttgccaaggttctagc 428  Q
    || || || ||  |||  |||||||||||| | || || || |||||||| ||| | || ||| ||||||| ||||| |||||    
T  25659895 gtctcgtcccctttggagttgaaggattatagaccgatttccttgcttggatgtctctataaaatacttgcaaaggtcctagc 25659977  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 177 - 251
Target Start/End: Original strand, 33482996 - 33483070
Alignment:
Q  177 ttttcgttaatggagatagaagcggtggtgagagatagtgacggtaataaaagtccgggtccggatggttttaat 251  Q
    ||||||||| ||||||| || ||||||||||  || ||||||||  ||||||||||||| ||||| |||||||||    
T  33482996 ttttcgttattggagattgaggcggtggtgaaggagagtgacggggataaaagtccgggaccggacggttttaat 33483070  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 49454579 - 49454632
Alignment:
Q  198 gcggtggtgagagatagtgacggtaataaaagtccgggtccggatggttttaat 251  Q
    |||||||||||||||||||| |||  |||||| ||||||||||||| |||||||    
T  49454579 gcggtggtgagagatagtgatggtggtaaaagcccgggtccggatgcttttaat 49454632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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