View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9684_low_20 (Length: 300)
Name: NF9684_low_20
Description: NF9684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9684_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 114 - 285
Target Start/End: Complemental strand, 33234504 - 33234333
Alignment:
| Q |
114 |
tacaagcctataatactagttatcctacattcttgcaaagcagacaagatagaaatttattattcaagtaaacaaaagataatcaagatgatcttctaac |
213 |
Q |
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| T |
33234504 |
tacaagcctataatactagttatcctacattcttgcaaagcagacaagatagaaattttttattcaagtaaacaaaagataatcaagatgatcttctaac |
33234405 |
T |
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| Q |
214 |
ataaagtttgtgcacatacaaattaccattattgttacccttaaccacaccaccattgtctataatgctttg |
285 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33234404 |
ataaagcttgtgcacatacaaattaccattattgttacccttaaccacaccaccattgtctataatgctttg |
33234333 |
T |
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Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 11 - 98
Target Start/End: Complemental strand, 33234572 - 33234488
Alignment:
| Q |
11 |
caaaggactagaggaagtacacgtatgtaataatataaaacttaaagcacacccataattatcatatatgttagaagcctataatact |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||| |||||||||||||| |
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| T |
33234572 |
caaaggactagaggaagtacacgtatgtaataatataaaacttaaagcacacac---attagcatatatgttacaagcctataatact |
33234488 |
T |
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