View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9684_low_27 (Length: 272)
Name: NF9684_low_27
Description: NF9684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9684_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 13060484 - 13060738
Alignment:
| Q |
1 |
tttcaccggcttcaaggcttcgtcttgttcattcatgannnnnnnnnnngtactatcaataagagatgtataacattccttttcaaattttcactttatg |
100 |
Q |
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| T |
13060484 |
tttcaccggcttcaaggcttcgtcttgttcattcatgatttttttttttgtactatcaataagagatgtataacattccttttcaaattttcactttatg |
13060583 |
T |
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| Q |
101 |
attgttccataacaatttacacctgattgtattaatgacttggaccctacaggtataagcaacagggaaaagaggctattgcagccgataatgttttctt |
200 |
Q |
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| T |
13060584 |
attgttccataacaatttacacctgattgtattaatgacttggaccctacaggtataagcaacagggaaaagaggctattgaagcagataatgttttctt |
13060683 |
T |
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| Q |
201 |
ttatattacatatgaaaggacagtggatattgataaaatttcagacccggtatgt |
255 |
Q |
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| T |
13060684 |
ttatattacatatgaaaggacagtggatattgataaaatttcagacccggtatgt |
13060738 |
T |
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Back To:
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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 131 - 255
Target Start/End: Complemental strand, 28357710 - 28357586
Alignment:
| Q |
131 |
attaatgacttggaccctacaggtataagcaacagggaaaagaggctattgcagccgataatgttttcttttatattacatatgaaaggacagtggatat |
230 |
Q |
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| T |
28357710 |
attaattagttggaccatgcaggtataaacaacggggcaaagaagctgttgctgcaaataatgttttcttctatattacctatgaagggacagtggatat |
28357611 |
T |
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| Q |
231 |
tgataaaatttcagacccggtatgt |
255 |
Q |
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| T |
28357610 |
tgataaaatctctgacccagtatgt |
28357586 |
T |
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