View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9684_low_28 (Length: 263)
Name: NF9684_low_28
Description: NF9684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9684_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 36561244 - 36561008
Alignment:
| Q |
18 |
gaaatgtggcggctagctattataaaatgaactatatgctgtttggtcttaacatctgtttgatgtctggtatgtttcaagatgataattggatagaagc |
117 |
Q |
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| T |
36561244 |
gaaatgtggcggctagctattataaaatgaactatatgctgtttggtcttaacatctgtttgatgtctggtatgtttcaagatgataattggatagaagc |
36561145 |
T |
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| Q |
118 |
aataagaaattctaatagttgctacttgctagaccacatgattctgccgtttcagccatgggaaatgcaattttcagaaatattctttccttagttttgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36561144 |
aataagaaattctaatagttgctacttgctagaccacatgattctgccgtttcagccatgggaaatgcaattatcagaaatattctttccttagttttgt |
36561045 |
T |
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| Q |
218 |
cttgataaaaactttctgccttttttgttttctctgc |
254 |
Q |
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| T |
36561044 |
cttgataaaaactttctgccttttttgttttctctgc |
36561008 |
T |
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