View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9684_low_29 (Length: 247)

Name: NF9684_low_29
Description: NF9684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9684_low_29
NF9684_low_29
[»] chr1 (4 HSPs)
chr1 (11-229)||(4679230-4679448)
chr1 (123-190)||(29465162-29465229)
chr1 (29-83)||(15594455-15594509)
chr1 (30-90)||(29465262-29465322)
[»] chr7 (11 HSPs)
chr7 (36-229)||(1300729-1300925)
chr7 (36-229)||(8658634-8658830)
chr7 (36-117)||(8646263-8646344)
chr7 (123-229)||(8666690-8666796)
chr7 (29-82)||(8586400-8586453)
chr7 (123-229)||(10495162-10495268)
chr7 (36-85)||(3146682-3146731)
chr7 (30-139)||(8616076-8616188)
chr7 (123-229)||(13334156-13334262)
chr7 (36-90)||(8666829-8666883)
chr7 (36-84)||(8653863-8653911)
[»] chr2 (4 HSPs)
chr2 (29-229)||(16658214-16658417)
chr2 (28-96)||(43624819-43624887)
chr2 (30-84)||(7541645-7541699)
chr2 (25-85)||(12246096-12246156)
[»] chr8 (1 HSPs)
chr8 (30-96)||(43744223-43744289)
[»] chr5 (1 HSPs)
chr5 (36-95)||(28219326-28219385)
[»] chr4 (2 HSPs)
chr4 (36-85)||(9336595-9336644)
chr4 (30-85)||(30774670-30774725)
[»] chr3 (3 HSPs)
chr3 (37-85)||(53416761-53416809)
chr3 (144-219)||(53417489-53417564)
chr3 (152-229)||(53416876-53416952)


Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 229
Target Start/End: Original strand, 4679230 - 4679448
Alignment:
Q  11 agataatactggtaccttaattaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttcgtttgatcttttgtgtccagatgct 110  Q
    ||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4679230 agataattctgatacctttattaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttcgtttgatcttttgtgtccagatgct 4679329  T
Q  111 cctcgtgacacacccttggaggtatgctttgctatagatgcaaatggcaccctaactgtttctgctaaagaaatgtctacaggaaatacgaacaagatca 210  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4679330 cctcgtggcacacccttggaggtatgctttgctatagatgcaaatggcaccctaactgtttctgctaaagaaatgtctacaggaaatacgaacaagatca 4679429  T
Q  211 ccataaccaatgaaaaaga 229  Q
    |||||||||||||||||||    
T  4679430 ccataaccaatgaaaaaga 4679448  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 190
Target Start/End: Complemental strand, 29465229 - 29465162
Alignment:
Q  123 cccttggaggtatgctttgctatagatgcaaatggcaccctaactgtttctgctaaagaaatgtctac 190  Q
    |||||||||||||||||| | || |||| |||||||| |||||||||| ||||||| ||||| |||||    
T  29465229 cccttggaggtatgcttttccattgatgaaaatggcatcctaactgttactgctaaggaaatatctac 29465162  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 15594509 - 15594455
Alignment:
Q  29 aattaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttggt 83  Q
    |||| |||||||||||||||||||||||||||| |  ||||| ||| ||||||||    
T  15594509 aattcaggtttatgagggtgagagagcaagagctagtgacaataatttgcttggt 15594455  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 29465322 - 29465262
Alignment:
Q  30 attaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttcgtttg 90  Q
    |||| ||| ||||||||||||||||||||||| |  |||||  ||||||||||||| ||||    
T  29465322 attagggtatatgagggtgagagagcaagagctagtgacaattatctgcttggttcatttg 29465262  T

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Target: chr7 (Bit Score: 75; Significance: 1e-34; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 36 - 229
Target Start/End: Complemental strand, 1300925 - 1300729
Alignment:
Q  36 gtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttcgtttgatcttt---tgtgtccagatgctcctcgtgacacacccttggagg 132  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||||||||  | ||||   |  ||| || ||||||||||| ||| ||||||||||    
T  1300925 gtttatgagggtgagagagcaagagcgcaagacaacaatctgcttggttcgttcaagctttctatccgtcgaggtgctcctcgtggcacccccttggagg 1300826  T
Q  133 tatgctttgctatagatgcaaatggcaccctaactgtttctgctaaagaaatgtctacaggaaatacgaacaagatcaccataaccaatgaaaaaga 229  Q
    |||| ||| ||||| ||| ||||||||   |||| |||||||| || ||||| |||||||||||||||||  |||||||||| | ||||||||||||    
T  1300825 tatgtttttctataaatgaaaatggcattttaacagtttctgccaaggaaatatctacaggaaatacgaatcagatcaccatcaacaatgaaaaaga 1300729  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 36 - 229
Target Start/End: Complemental strand, 8658830 - 8658634
Alignment:
Q  36 gtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttcgtttgatcttttgtg---tccagatgctcctcgtgacacacccttggagg 132  Q
    ||||| ||||||||||||||||||||   ||||||||||||||||||||||||  | ||||  ||   ||||| ||||||||||| ||| ||||||||||    
T  8658830 gtttacgagggtgagagagcaagagcgctagacaacaatctgcttggttcgttcaaactttcttgccgtccaggtgctcctcgtggcactcccttggagg 8658731  T
Q  133 tatgctttgctatagatgcaaatggcaccctaactgtttctgctaaagaaatgtctacaggaaatacgaacaagatcaccataaccaatgaaaaaga 229  Q
    |||| ||| | ||  ||| ||||||||   |||| ||||| ||||| ||||| ||| ||||||||| |||| |||||||||||| ||||||||||||    
T  8658730 tatgtttttcaatcaatgaaaatggcattttaacagtttcggctaaggaaatatcttcaggaaatatgaaccagatcaccataaacaatgaaaaaga 8658634  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 8646344 - 8646263
Alignment:
Q  36 gtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttcgtttgatcttttgtgtccagatgctcctcgtg 117  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||| ||| |||||| |   |||| |||||||||||    
T  8646344 gtttatgagggtgagagagcaagagcaagtgacaacaatctgcttggttcttttaatctttggctcccagctgctcctcgtg 8646263  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 229
Target Start/End: Complemental strand, 8666796 - 8666690
Alignment:
Q  123 cccttggaggtatgctttgctatagatgcaaatggcaccctaactgtttctgctaaagaaatgtctacaggaaatacgaacaagatcaccataaccaatg 222  Q
    |||||||||||||||||| | || |||| |||||| | ||| |||||| ||||||  ||||| || ||||| |||| ||||| |||||||||||||||||    
T  8666796 cccttggaggtatgcttttcaattgatgaaaatggtatcctgactgttactgctagggaaatatccacaggcaatatgaacatgatcaccataaccaatg 8666697  T
Q  223 aaaaaga 229  Q
    | |||||    
T  8666696 acaaaga 8666690  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 8586400 - 8586453
Alignment:
Q  29 aattaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttgg 82  Q
    ||||||||||||||||||||||||||||||||| |  |||||||||||||||||    
T  8586400 aattaaggtttatgagggtgagagagcaagagctagtgacaacaatctgcttgg 8586453  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 229
Target Start/End: Original strand, 10495162 - 10495268
Alignment:
Q  123 cccttggaggtatgctttgctatagatgcaaatggcaccctaactgtttctgctaaagaaatgtctacaggaaatacgaacaagatcaccataaccaatg 222  Q
    |||||||||||||||||| | || |||| |||||||| ||| |||||| ||||||| || || |||||||| |||| ||||  ||||||||| || ||||    
T  10495162 cccttggaggtatgcttttccattgatgaaaatggcatcctgactgttactgctaaggatatatctacaggcaatatgaacgcgatcaccattactaatg 10495261  T
Q  223 aaaaaga 229  Q
    | |||||    
T  10495262 acaaaga 10495268  T

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Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 3146731 - 3146682
Alignment:
Q  36 gtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttc 85  Q
    |||||||||||||||||||||||||| |  ||||||||||||||||||||    
T  3146731 gtttatgagggtgagagagcaagagctagtgacaacaatctgcttggttc 3146682  T

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Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 8616188 - 8616076
Alignment:
Q  30 attaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttcgtttgatcttttgtg---tccagatgctcctcgtgacacaccct 126  Q
    |||||| ||||||||||||||||| ||||||| |  ||||||||||||||||| |  ||| |||||| |||   ||| | ||||||| |||||   ||||    
T  8616188 attaagttttatgagggtgagagatcaagagctagtgacaacaatctgcttggatttttttatctttcgtgcactcctggtgctccttgtgaccatccct 8616089  T
Q  127 tggaggtatgctt 139  Q
    |||||||||||||    
T  8616088 tggaggtatgctt 8616076  T

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Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 123 - 229
Target Start/End: Original strand, 13334156 - 13334262
Alignment:
Q  123 cccttggaggtatgctttgctatagatgcaaatggcaccctaactgtttctgctaaagaaatgtctacaggaaatacgaacaagatcaccataaccaatg 222  Q
    |||||||||||||||||| | || |||| |||||||| ||| || ||| ||||||| || || |||||||| |||| ||||  ||||||||| || ||||    
T  13334156 cccttggaggtatgcttttccattgatgaaaatggcatcctgacggttactgctaaggatatatctacaggcaatatgaacgcgatcaccattactaatg 13334255  T
Q  223 aaaaaga 229  Q
    | |||||    
T  13334256 acaaaga 13334262  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 8666883 - 8666829
Alignment:
Q  36 gtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttcgtttg 90  Q
    |||||||||||||||||| |||||||  | ||||| |||||||||||||| ||||    
T  8666883 gtttatgagggtgagagaccaagagctgctgacaataatctgcttggttcatttg 8666829  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 8653911 - 8653863
Alignment:
Q  36 gtttatgagggtgagagagcaagagcaacagacaacaatctgcttggtt 84  Q
    |||||||||||||||||| ||||||| |  ||||| |||||||||||||    
T  8653911 gtttatgagggtgagagaccaagagctagtgacaataatctgcttggtt 8653863  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 229
Target Start/End: Original strand, 16658214 - 16658417
Alignment:
Q  29 aattaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttcgtttgatcttttgtg---tccagatgctcctcgtgacacaccc 125  Q
    |||||| ||||||||||||||||||||||||||  | ||||| |||||||| ||||  ||    ||||  ||   ||||| ||||||||| | |  ||||    
T  16658214 aattaatgtttatgagggtgagagagcaagagctgctgacaataatctgctcggttttttcagcctttcttgcgttccaggtgctcctcggggccaaccc 16658313  T
Q  126 ttggaggtatgctttgctatagatgcaaatggcaccctaactgtttctgctaaagaaatgtctacaggaaatacgaacaagatcaccataaccaatgaaa 225  Q
    || || ||||| ||||   | |||| |||||| | |||||||||||||||||| ||| | |||||||||||||| |||||||||||||||||||||||||    
T  16658314 ttagatgtatgttttgacctcgatgaaaatggtatcctaactgtttctgctaaggaagtatctacaggaaatacaaacaagatcaccataaccaatgaaa 16658413  T
Q  226 aaga 229  Q
    ||||    
T  16658414 aaga 16658417  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 43624887 - 43624819
Alignment:
Q  28 taattaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttcgtttgatcttt 96  Q
    ||||| ||||||||||| ||||||||||| ||| ||  |||||||||||| ||||||| ||| ||||||    
T  43624887 taattgaggtttatgagtgtgagagagcatgagtaagtgacaacaatctgattggttcttttaatcttt 43624819  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 7541699 - 7541645
Alignment:
Q  30 attaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttggtt 84  Q
    ||||| |||||||||||||||||||||||||| |  || |||||| |||||||||    
T  7541699 attaatgtttatgagggtgagagagcaagagccagtgataacaatttgcttggtt 7541645  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 12246096 - 12246156
Alignment:
Q  25 ccttaattaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttc 85  Q
    |||| ||||||||||| |||||||||||| ||| ||| |  ||||||||| ||||||||||    
T  12246096 ccttgattaaggtttacgagggtgagagaacaaaagccagtgacaacaatttgcttggttc 12246156  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 43744289 - 43744223
Alignment:
Q  30 attaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttcgtttgatcttt 96  Q
    ||||| ||||||||||||||||||||||||||||  |||||||||||||||||||| |||| |||||    
T  43744289 attaaagtttatgagggtgagagagcaagagcaagtgacaacaatctgcttggttcttttgctcttt 43744223  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 95
Target Start/End: Complemental strand, 28219385 - 28219326
Alignment:
Q  36 gtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttcgtttgatctt 95  Q
    |||||||||||||||||||||| |||||  |||||||||||||||||||| |||||||||    
T  28219385 gtttatgagggtgagagagcaaaagcaagtgacaacaatctgcttggttcttttgatctt 28219326  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 9336595 - 9336644
Alignment:
Q  36 gtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttc 85  Q
    |||||||||||||||||| ||||||| || ||||| ||||||||||||||    
T  9336595 gtttatgagggtgagagaccaagagctactgacaataatctgcttggttc 9336644  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 30774725 - 30774670
Alignment:
Q  30 attaaggtttatgagggtgagagagcaagagcaacagacaacaatctgcttggttc 85  Q
    ||||| |||||||||||||||||||||||||   | |||||||||||||| |||||    
T  30774725 attaatgtttatgagggtgagagagcaagagtcgcggacaacaatctgctaggttc 30774670  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 53416761 - 53416809
Alignment:
Q  37 tttatgagggtgagagagcaagagcaacagacaacaatctgcttggttc 85  Q
    ||||||||||||||||| ||||||| || ||||| ||||||||||||||    
T  53416761 tttatgagggtgagagaccaagagctactgacaataatctgcttggttc 53416809  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 219
Target Start/End: Complemental strand, 53417564 - 53417489
Alignment:
Q  144 atagatgcaaatggcaccctaactgtttctgctaaagaaatgtctacaggaaatacgaacaagatcaccataacca 219  Q
    ||||||| |||||| | |||||| ||||||||||| |||||  ||| | |||||| |||| |||||||||||||||    
T  53417564 atagatgaaaatggtatcctaaccgtttctgctaaggaaataactagaagaaataagaacgagatcaccataacca 53417489  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 229
Target Start/End: Original strand, 53416876 - 53416952
Alignment:
Q  152 aaatggcaccctaactgtttctgctaaagaaatgtctacaggaaatacgaacaagatcaccataaccaatgaaaaaga 229  Q
    |||||| | |||||||||||||||||| ||||| |||| | |||||| |||| |||| |||||||||| ||| |||||    
T  53416876 aaatggtatcctaactgtttctgctaaggaaatatctagaagaaataagaactagat-accataaccagtgacaaaga 53416952  T

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