View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9684_low_7 (Length: 410)
Name: NF9684_low_7
Description: NF9684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9684_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 6939729 - 6939329
Alignment:
| Q |
1 |
taaaccttgtatgagaacaatacatcccacatatcaaaatagtgcaaaagagaaaagaagggagaaaaatggagagtgaaagtgagatcccaattttgga |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6939729 |
taaaccttgtatgagaacaatacaacccacatatcaaaatagtgcaaaagagaaaagaagggagaaaaatggagaatgaaagtgagatcccaattttgga |
6939630 |
T |
|
| Q |
101 |
tttccgtaggagtagtggagtgacattagaagaagggagtgaagggtggaaagaaatgagcaagaaagtgagagaagcattcgagagtcgaggttgcttc |
200 |
Q |
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| T |
6939629 |
tttccgtaggagtagtggagtgacattagaaaaagggagtgaagggtggaaagaaatgagcaagaaagtgagagaagcatttgagagtcgaggttgcttc |
6939530 |
T |
|
| Q |
201 |
ctcttaaaatgtgatgaaatctcaaaggaattatgtggagaattgttcacaggaatgaaatctttgtttgatctgcctgaggacaccaaggagaagtttg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
6939529 |
ctcttaaaatgtgatgaaatctcaaaggaattatgtggacaattgttcacaggaatgaaatctttgtttgatctgcctgaagacaccaaggagaaatttg |
6939430 |
T |
|
| Q |
301 |
ttagtccaaagctttacaggggttacatcaacaaaagctatgccattcccaattctcaaagctttgggattgatagtgattttgatcatgatacgactca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
6939429 |
ttagtccaaagctttacaggggttacatcaacaaaagctatgccattcccaattctcaaagctttgggattgatagtgatcttgatcatgatacgactca |
6939330 |
T |
|
| Q |
401 |
t |
401 |
Q |
| |
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| |
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| T |
6939329 |
t |
6939329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 131 - 298
Target Start/End: Complemental strand, 6932196 - 6932029
Alignment:
| Q |
131 |
agaagggagtgaagggtggaaagaaatgagcaagaaagtgagagaagcattcgagagtcgaggttgcttcctcttaaaatgtgatgaaatctcaaaggaa |
230 |
Q |
| |
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||||| ||||||||| |||||||||||| |||||||||||||||||||||| |||| || ||||| ||| || ||| |||||||||||| || || |
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| T |
6932196 |
agaagagagtgaaggatggaaagaaatgtgcaagaaagtgagagaagcatttgagaatcatggttgtttcatcgtaaggggtgatgaaatcttgaatcaa |
6932097 |
T |
|
| Q |
231 |
ttatgtggagaattgttcacaggaatgaaatctttgtttgatctgcctgaggacaccaaggagaagtt |
298 |
Q |
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| T |
6932096 |
tcacgtgaagaattgttcacaggcatgaaatcattgtttgatctacccgaggagactaagcagaagtt |
6932029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 5e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 83 - 298
Target Start/End: Original strand, 49831688 - 49831903
Alignment:
| Q |
83 |
tgagatcccaattttggatttccgtaggagtagtggagtgacattagaagaagggagtgaagggtggaaagaaatgagcaagaaagtgagagaagcattc |
182 |
Q |
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||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49831688 |
tgagatcccaattttggattttcgtaaaagtagtggagtgacattagaagaaggcagtgaagggtggaaagaaatgagcaagaaagtgagagaagcattt |
49831787 |
T |
|
| Q |
183 |
gagagtcgaggttgcttcctcttaaaatgtgatgaaatctcaaaggaattatgtggagaattgttcacaggaatgaaatctttgtttgatctgcctgagg |
282 |
Q |
| |
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||||||| ||||||||| ||||||| ||||||||||| |||| |||||| ||| | || ||||||| || |||||||| ||||||||||| ||||||| |
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| T |
49831788 |
gagagtcatggttgcttcttcttaaagtgtgatgaaataccaaatgaattacgtgaaaaaatgttcactggtatgaaatcattgtttgatctacctgagg |
49831887 |
T |
|
| Q |
283 |
acaccaaggagaagtt |
298 |
Q |
| |
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| |||||| ||||||| |
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| T |
49831888 |
agaccaagcagaagtt |
49831903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 2096427 - 2096357
Alignment:
| Q |
130 |
aagaagggagtgaagggtggaaagaaatgagcaagaaagtgagagaagcattcgagagtcgaggttgcttc |
200 |
Q |
| |
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||||||||||||| | ||||||| |||||||||| |||||||||||||||| ||||||| ||||||||| |
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| T |
2096427 |
aagaagggagtgaggagtggaaaaaaatgagcaaaaaagtgagagaagcatgtgagagtcatggttgcttc |
2096357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 132 - 207
Target Start/End: Original strand, 12458883 - 12458958
Alignment:
| Q |
132 |
gaagggagtgaagggtggaaagaaatgagcaagaaagtgagagaagcattcgagagtcgaggttgcttcctcttaa |
207 |
Q |
| |
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||||||||||| | ||||||| | |||||||| |||||||||||||||| ||||||| ||||||||| |||||| |
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| T |
12458883 |
gaagggagtgaggagtggaaaaagatgagcaaaaaagtgagagaagcatgtgagagtcatggttgcttcttcttaa |
12458958 |
T |
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