View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9685_low_12 (Length: 300)
Name: NF9685_low_12
Description: NF9685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9685_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 66 - 285
Target Start/End: Original strand, 26696197 - 26696416
Alignment:
| Q |
66 |
ccttaaagtgtgtttttcttcccaattttacacattccatttactcatgcatgcctttctactgtcactaatcaccatagatcggttgttcttttttaaa |
165 |
Q |
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| T |
26696197 |
ccttaaagtgtgtttttcttcccaattttacacattccatttactcatgcatgcctttctactgtcactaatcaccatagatcggttgttcttttttaaa |
26696296 |
T |
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| Q |
166 |
gttgggaatatactttggtttctaatatatgcctaaagcagtgactatatttaaaaaataaataaactagaaaacaatccaacagcacaagnnnnnnnga |
265 |
Q |
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| T |
26696297 |
gttgggaatatactttagtttctaatatatgcctaaagcagtgactatatttaaaaaataaataaactagaaaacaatccaacagcacaagaaaaaaaga |
26696396 |
T |
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| Q |
266 |
ctgtttacaacaattgttac |
285 |
Q |
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| T |
26696397 |
ctgtttacaacaattgttac |
26696416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 26695774 - 26695824
Alignment:
| Q |
20 |
ctatcacatatatttaacttacgctaaggagattatgaccaacacacctta |
70 |
Q |
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| T |
26695774 |
ctatcacatatatttaacttacgctaaggagattatgatcaacacacctta |
26695824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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