View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9685_low_2 (Length: 480)
Name: NF9685_low_2
Description: NF9685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9685_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 223 - 464
Target Start/End: Complemental strand, 53675128 - 53674887
Alignment:
| Q |
223 |
gtttacgtgatttgcattccttctgattagtccgcaaaaaacgacattgaatagggatggattctagagacatggaggggaccaaattttagtaagtact |
322 |
Q |
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| T |
53675128 |
gtttacgtgatttgcattccttctgattagtctgcaaaaaacgacattcgatagggatggattctagagacatggagtggaccaaattttagtaagtact |
53675029 |
T |
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| Q |
323 |
aagatgaagagtattttagagggaatcaaaaatatagttgaccctgtctgtcatataatggttagactttaatatggtttgctattagagtcgaagaatg |
422 |
Q |
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| T |
53675028 |
aagatgaagagtattttagagggaataaaaaatatagttgaccctgtctgtcatataatggttagactttaatatggtttgctattagagtcgaagaatg |
53674929 |
T |
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| Q |
423 |
ctgatgaaaacatcattatcaggttaatttggaggcaaaagt |
464 |
Q |
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| T |
53674928 |
ctgatgaaaacatcattatcaggttaatttggaggcaaaagt |
53674887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 53675399 - 53675181
Alignment:
| Q |
1 |
gaaacgtgtatcagtgagaagaagacaatcacaacttaggcaagcaaaagcatatgttatatctgtgcttggagaatttgcacagacttgttgttggtcc |
100 |
Q |
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| T |
53675399 |
gaaacgtgtatcagtgagaagaagacaatcacaacttaggcaagcaaaagcatatgttatatctgtgcttggagaatttgcacagacttgttg---gtcc |
53675303 |
T |
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| Q |
101 |
aaacaggtaattaatttcaaacacacgtgaatcaaatcatacaagtatatatgtgtctccatcatcaataaaattgaggaaaaaataatgttttgttatt |
200 |
Q |
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| T |
53675302 |
aaacaggtaattaatttcaaacacacgtgaatcaaatcatacaagtatatatgtgtctccatcatcaataaaattggggaaaaaataatgttttgttatt |
53675203 |
T |
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| Q |
201 |
ggatagggggaatgcaacacat |
222 |
Q |
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| T |
53675202 |
ggatagggggaatgcaacacat |
53675181 |
T |
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