View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9685_low_3 (Length: 458)

Name: NF9685_low_3
Description: NF9685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9685_low_3
NF9685_low_3
[»] chr7 (9 HSPs)
chr7 (193-408)||(35119034-35119249)
chr7 (16-128)||(35119314-35119426)
chr7 (409-445)||(35118962-35118998)
chr7 (6-60)||(23552117-23552171)
chr7 (6-60)||(45709731-45709785)
chr7 (6-59)||(7801180-7801233)
chr7 (6-59)||(25021358-25021411)
chr7 (6-59)||(25956315-25956368)
chr7 (6-59)||(26459433-26459486)
[»] chr5 (6 HSPs)
chr5 (6-60)||(26598523-26598577)
chr5 (6-59)||(14495828-14495881)
chr5 (6-59)||(21549160-21549213)
chr5 (6-59)||(29075781-29075834)
chr5 (23-59)||(892514-892550)
chr5 (6-62)||(29692409-29692465)
[»] chr1 (7 HSPs)
chr1 (6-60)||(8177205-8177259)
chr1 (20-61)||(2074000-2074041)
chr1 (6-59)||(9165218-9165271)
chr1 (26-59)||(38978985-38979018)
chr1 (6-59)||(51703779-51703832)
chr1 (6-47)||(52336797-52336838)
chr1 (18-58)||(2069657-2069697)
[»] chr8 (4 HSPs)
chr8 (6-59)||(20994481-20994534)
chr8 (6-60)||(16852339-16852393)
chr8 (6-56)||(35690087-35690137)
chr8 (23-59)||(32157191-32157227)
[»] chr6 (2 HSPs)
chr6 (6-63)||(12188326-12188383)
chr6 (6-59)||(24641213-24641266)
[»] chr4 (4 HSPs)
chr4 (17-62)||(27965544-27965589)
chr4 (19-59)||(47044717-47044757)
chr4 (6-59)||(37109374-37109427)
chr4 (7-60)||(51250546-51250599)
[»] chr2 (5 HSPs)
chr2 (23-59)||(23922162-23922198)
chr2 (6-60)||(34041611-34041665)
chr2 (6-60)||(42602553-42602607)
chr2 (6-59)||(42327418-42327471)
chr2 (6-58)||(16918601-16918653)
[»] scaffold0070 (1 HSPs)
scaffold0070 (17-59)||(42554-42596)
[»] chr3 (11 HSPs)
chr3 (21-59)||(203090-203128)
chr3 (6-60)||(7975417-7975471)
chr3 (17-59)||(16991542-16991584)
chr3 (6-52)||(28928902-28928948)
chr3 (6-60)||(46518627-46518681)
chr3 (6-59)||(4222141-4222194)
chr3 (6-55)||(4844534-4844583)
chr3 (6-55)||(4870230-4870279)
chr3 (6-59)||(14339610-14339663)
chr3 (6-59)||(31788993-31789046)
chr3 (23-59)||(28562427-28562463)


Alignment Details
Target: chr7 (Bit Score: 180; Significance: 5e-97; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 5e-97
Query Start/End: Original strand, 193 - 408
Target Start/End: Complemental strand, 35119249 - 35119034
Alignment:
Q  193 tcttaattttactatatgttattttaaataaagaattgtgaaaagaatccaactcgaggggctgaacaaacaacatcgtatnnnnnnnnnnnntccatac 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||    
T  35119249 tcttaattttactatatgttattttaaataaagaattgtgaaaagaatccaactcgaggggctgaacaaacaacatcgtatcaccccctcccctccatac 35119150  T
Q  293 taccgcccctccatcgtccaccaccactactcctactcacctccttcaaatctaaacccaccctccactacgtagctagacaacgctggtggtgcgcacc 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35119149 taccgcccctccatcgtccaccaccactactcctactcacctccttcaaatctaaacccaccctccactacgtagctagacaacgctggtggtgcgcacc 35119050  T
Q  393 atcgaacaaataaatt 408  Q
    ||||||||||||||||    
T  35119049 atcgaacaaataaatt 35119034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 35119426 - 35119314
Alignment:
Q  16 acccagatcccaagtcaataccactaggccaatccaaatgggtttgtaacttataagttcaaatgatcaaaatagatttggatggtaataatctttttct 115  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35119426 acccagatcccaagtcaataccactaggccaacccaaatgggtttgtaacttataagttcaaatgatcaaaatagatttggatggtaataatctttttct 35119327  T
Q  116 tgcaagtttatag 128  Q
    |||||||||||||    
T  35119326 tgcaagtttatag 35119314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 409 - 445
Target Start/End: Complemental strand, 35118998 - 35118962
Alignment:
Q  409 cacttatctacaaactaatttatcatgttacacaggt 445  Q
    |||||||||||||||||||||||||||||||||||||    
T  35118998 cacttatctacaaactaatttatcatgttacacaggt 35118962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 23552171 - 23552117
Alignment:
Q  6 aggagcacagacccagatcccaagtcaataccactaggccaatccaaatgggttt 60  Q
    |||||||||  ||||| ||||||||||||| ||||||||||| |||| |||||||    
T  23552171 aggagcacactcccaggtcccaagtcaatagcactaggccaacccaagtgggttt 23552117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 45709731 - 45709785
Alignment:
Q  6 aggagcacagacccagatcccaagtcaataccactaggccaatccaaatgggttt 60  Q
    |||||||||  | |||||||||||  |||||||||||||||| ||||||||||||    
T  45709731 aggagcacactctcagatcccaagctaataccactaggccaacccaaatgggttt 45709785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 7801233 - 7801180
Alignment:
Q  6 aggagcacagacccagatcccaagtcaataccactaggccaatccaaatgggtt 59  Q
    |||||||||  ||||| ||||||||||||||||| ||||||| |||| ||||||    
T  7801233 aggagcacactcccaggtcccaagtcaataccaccaggccaaaccaagtgggtt 7801180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 25021358 - 25021411
Alignment:
Q  6 aggagcacagacccagatcccaagtcaataccactaggccaatccaaatgggtt 59  Q
    |||||||||  ||||| ||||||| ||||||||||||||||| |||| ||||||    
T  25021358 aggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 25021411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 25956315 - 25956368
Alignment:
Q  6 aggagcacagacccagatcccaagtcaataccactaggccaatccaaatgggtt 59  Q
    |||||||||  || || ||||||| ||||||||||||||||| |||||||||||    
T  25956315 aggagcacactccaaggtcccaagccaataccactaggccaacccaaatgggtt 25956368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 26459433 - 26459486
Alignment:
Q  6 aggagcacagacccagatcccaagtcaataccactaggccaatccaaatgggtt 59  Q
    |||||||||  ||||| ||||||| ||||||||||||||||| |||| ||||||    
T  26459433 aggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 26459486  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 26598577 - 26598523
Alignment:
Q  6 aggagcacagacccagatcccaagtcaataccactaggccaatccaaatgggttt 60  Q
    |||||||||  | ||||||||||| |||||||||||||||||||||| |||||||    
T  26598577 aggagcacactctcagatcccaagccaataccactaggccaatccaagtgggttt 26598523  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 14495828 - 14495881
Alignment:
Q  6 aggagcacagacccagatcccaagtcaataccactaggccaatccaaatgggtt 59  Q
    |||||||||  ||||||||||||||||||||||| || |||| |||||||||||    
T  14495828 aggagcacactcccagatcccaagtcaataccaccagaccaacccaaatgggtt 14495881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 21549160 - 21549213
Alignment:
Q  6 aggagcacagacccagatcccaagtcaataccactaggccaatccaaatgggtt 59  Q
    |||||||||  ||||| ||||||| ||||||||||||||||| |||| ||||||    
T  21549160 aggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 21549213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 29075834 - 29075781
Alignment:
Q  6 aggagcacagacccagatcccaagtcaataccactaggccaatccaaatgggtt 59  Q
    |||||||||  ||||||||||||| |||||||||||||| || |||| ||||||    
T  29075834 aggagcacactcccagatcccaagccaataccactaggcaaacccaagtgggtt 29075781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 892514 - 892550
Alignment:
Q  23 tcccaagtcaataccactaggccaatccaaatgggtt 59  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  892514 tcccaagccaataccactaggccaacccaaatgggtt 892550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 29692409 - 29692465
Alignment:
Q  6 aggagcacagacccagatcccaagtcaataccactaggccaatccaaatgggtttgt 62  Q
    |||||||||  ||||||||||||  ||||||||| || |||| ||||||||||||||    
T  29692409 aggagcacactcccagatcccaatccaataccaccagaccaacccaaatgggtttgt 29692465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 8177205 - 8177259
Alignment:
Q  6 aggagcacagacccagatcccaagtcaataccactaggccaatccaaatgggttt 60  Q
    |||||||||  ||||||||||||| |||||||||||||||||  |||||||||||    
T  8177205 aggagcacactcccagatcccaagccaataccactaggccaactcaaatgggttt 8177259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 2074041 - 2074000
Alignment:
Q  20 agatcccaagtcaataccactaggccaatccaaatgggtttg 61  Q
    ||||||||||||||||| || ||||||| |||||||||||||    
T  2074041 agatcccaagtcaatacaaccaggccaacccaaatgggtttg 2074000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 9165218 - 9165271
Alignment:
Q  6 aggagcacagacccagatcccaagtcaataccactaggccaatccaaatgggtt 59  Q
    |||||||||  ||||| ||||||| ||||||||||||||||| |||| ||||||    
T  9165218 aggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 9165271  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 38978985 - 38979018
Alignment:
Q  26 caagtcaataccactaggccaatccaaatgggtt 59  Q
    |||||||||||||||||||||| |||||||||||    
T  38978985 caagtcaataccactaggccaacccaaatgggtt 38979018  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 51703832 - 51703779
Alignment:
Q  6 aggagcacagacccagatcccaagtcaataccactaggccaatccaaatgggtt 59  Q
    |||||||||  ||||||| ||||| |||||||||||| |||| |||||||||||    
T  51703832 aggagcacactcccagattccaagccaataccactagaccaacccaaatgggtt 51703779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 52336797 - 52336838
Alignment:
Q  6 aggagcacagacccagatcccaagtcaataccactaggccaa 47  Q
    |||||||||  ||||||||||||| |||||||||||||||||    
T  52336797 aggagcacactcccagatcccaagccaataccactaggccaa 52336838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 2069697 - 2069657
Alignment:
Q  18 ccagatcccaagtcaataccactaggccaatccaaatgggt 58  Q
    ||||||||||||||||||| || ||||||| ||||||||||    
T  2069697 ccagatcccaagtcaatacaaccaggccaacccaaatgggt 2069657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 20994481 - 20994534
Alignment:
Q  6 aggagcacagacccagatcccaagtcaataccactaggccaatccaaatgggtt 59  Q
    |||||||||  ||||| ||||||||||||||||||||||||| |||| ||||||    
T  20994481 aggagcacactcccaggtcccaagtcaataccactaggccaacccaagtgggtt 20994534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 16852393 - 16852339
Alignment:
Q  6 aggagcacagacccagatcccaagtcaataccactaggccaatccaaatgggttt 60  Q
    |||||||||  ||||| ||||||| ||||||||||||||||| |||| |||||||    
T  16852393 aggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggttt 16852339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 35690087 - 35690137
Alignment:
Q  6 aggagcacagacccagatcccaagtcaataccactaggccaatccaaatgg 56  Q
    ||||||| | |||||||||||||| |||||||||||||||||  |||||||    
T  35690087 aggagcaaacacccagatcccaagccaataccactaggccaacacaaatgg 35690137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 32157227 - 32157191
Alignment:
Q  23 tcccaagtcaataccactaggccaatccaaatgggtt 59  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  32157227 tcccaagtcaataccaccaggccaacccaaatgggtt 32157191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 12188326 - 12188383
Alignment:
Q  6 aggagcacagacccagatcccaagtcaataccactaggccaatccaaatgggtttgta 63  Q
    |||||||||  ||||| ||||||| ||||||||||||||||| |||| ||||||||||    
T  12188326 aggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtttgta 12188383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 24641213 - 24641266
Alignment:
Q  6 aggagcacagacccagatcccaagtcaataccactaggccaatccaaatgggtt 59  Q
    |||||||||  ||||||||||||||||||||||| | ||||| |||||||||||    
T  24641213 aggagcacactcccagatcccaagtcaataccaccaagccaacccaaatgggtt 24641266  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 27965544 - 27965589
Alignment:
Q  17 cccagatcccaagtcaataccactaggccaatccaaatgggtttgt 62  Q
    ||||||||||||| ||||||||||||||||| |||| |||||||||    
T  27965544 cccagatcccaagccaataccactaggccaacccaagtgggtttgt 27965589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 47044757 - 47044717
Alignment:
Q  19 cagatcccaagtcaataccactaggccaatccaaatgggtt 59  Q
    ||||||||||||||||||||| |||||||||||| ||||||    
T  47044757 cagatcccaagtcaataccaccaggccaatccaagtgggtt 47044717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 37109374 - 37109427
Alignment:
Q  6 aggagcacagacccagatcccaagtcaataccactaggccaatccaaatgggtt 59  Q
    |||||||||  ||||| ||||||| ||||||||||||||||| |||| ||||||    
T  37109374 aggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 37109427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 51250546 - 51250599
Alignment:
Q  7 ggagcacagacccagatcccaagtcaataccactaggccaatccaaatgggttt 60  Q
    ||||||||  ||||||||||||| ||||||||| ||||||| |||| |||||||    
T  51250546 ggagcacactcccagatcccaagccaataccaccaggccaacccaagtgggttt 51250599  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 23922162 - 23922198
Alignment:
Q  23 tcccaagtcaataccactaggccaatccaaatgggtt 59  Q
    ||||||||||||||||||||| |||||||||||||||    
T  23922162 tcccaagtcaataccactaggtcaatccaaatgggtt 23922198  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 34041611 - 34041665
Alignment:
Q  6 aggagcacagacccagatcccaagtcaataccactaggccaatccaaatgggttt 60  Q
    |||||||||  | ||||||| ||||||||||||||||||||| |||| |||||||    
T  34041611 aggagcacactctcagatcctaagtcaataccactaggccaacccaagtgggttt 34041665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 42602607 - 42602553
Alignment:
Q  6 aggagcacagacccagatcccaagtcaataccactaggccaatccaaatgggttt 60  Q
    |||||||||  ||||| ||||||| ||||||||||||||||| |||| |||||||    
T  42602607 aggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggttt 42602553  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 42327418 - 42327471
Alignment:
Q  6 aggagcacagacccagatcccaagtcaataccactaggccaatccaaatgggtt 59  Q
    |||||||||  ||||| ||||||| ||||||||||||||||| |||| ||||||    
T  42327418 aggagcacactcccaggtcccaagccaataccactaggccaacccaagtgggtt 42327471  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 16918601 - 16918653
Alignment:
Q  6 aggagcacagacccagatcccaagtcaataccactaggccaatccaaatgggt 58  Q
    |||||||||  ||||||||||||  ||||||||||||||||| |||| |||||    
T  16918601 aggagcacactcccagatcccaaaccaataccactaggccaacccaagtgggt 16918653  T

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Target: scaffold0070 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 42554 - 42596
Alignment:
Q  17 cccagatcccaagtcaataccactaggccaatccaaatgggtt 59  Q
    ||||||| ||||||||||||||||||||||| |||| ||||||    
T  42554 cccagattccaagtcaataccactaggccaacccaactgggtt 42596  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 203128 - 203090
Alignment:
Q  21 gatcccaagtcaataccactaggccaatccaaatgggtt 59  Q
    ||||||||||||||||||||||||||| |||| ||||||    
T  203128 gatcccaagtcaataccactaggccaacccaagtgggtt 203090  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 7975471 - 7975417
Alignment:
Q  6 aggagcacagacccagatcccaagtcaataccactaggccaatccaaatgggttt 60  Q
    |||||||||  ||||||||||||| | ||||||||||||||| | ||||||||||    
T  7975471 aggagcacactcccagatcccaagcctataccactaggccaacctaaatgggttt 7975417  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 16991584 - 16991542
Alignment:
Q  17 cccagatcccaagtcaataccactaggccaatccaaatgggtt 59  Q
    ||||||||||||| ||||||||| ||||||| |||||||||||    
T  16991584 cccagatcccaagccaataccaccaggccaacccaaatgggtt 16991542  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 28928902 - 28928948
Alignment:
Q  6 aggagcacagacccagatcccaagtcaataccactaggccaatccaa 52  Q
    |||||||||  | ||||||||||| ||||||||||||||||||||||    
T  28928902 aggagcacactctcagatcccaagccaataccactaggccaatccaa 28928948  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 46518681 - 46518627
Alignment:
Q  6 aggagcacagacccagatcccaagtcaataccactaggccaatccaaatgggttt 60  Q
    |||||||||  ||||||||||||| ||||||||||| ||||| |||| |||||||    
T  46518681 aggagcacactcccagatcccaagccaataccactatgccaacccaagtgggttt 46518627  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 4222194 - 4222141
Alignment:
Q  6 aggagcacagacccagatcccaagtcaataccactaggccaatccaaatgggtt 59  Q
    |||||||||  ||||||||||||| ||||||||||| ||||| |||| ||||||    
T  4222194 aggagcacactcccagatcccaagccaataccactaagccaacccaagtgggtt 4222141  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 4844534 - 4844583
Alignment:
Q  6 aggagcacagacccagatcccaagtcaataccactaggccaatccaaatg 55  Q
    |||||||||  ||||||||||||||||||||||| || |||| |||||||    
T  4844534 aggagcacactcccagatcccaagtcaataccaccagaccaacccaaatg 4844583  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 4870230 - 4870279
Alignment:
Q  6 aggagcacagacccagatcccaagtcaataccactaggccaatccaaatg 55  Q
    |||||||||  ||||||||||||||||||||||| || |||| |||||||    
T  4870230 aggagcacactcccagatcccaagtcaataccaccagaccaacccaaatg 4870279  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 14339663 - 14339610
Alignment:
Q  6 aggagcacagacccagatcccaagtcaataccactaggccaatccaaatgggtt 59  Q
    |||||||||  |||| |||||||| ||||||||| |||||||||||| ||||||    
T  14339663 aggagcacactcccaaatcccaagccaataccaccaggccaatccaactgggtt 14339610  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 31788993 - 31789046
Alignment:
Q  6 aggagcacagacccagatcccaagtcaataccactaggccaatccaaatgggtt 59  Q
    |||||||||  ||||||||||||| ||||| ||||||||||| |||| ||||||    
T  31788993 aggagcacactcccagatcccaagccaataacactaggccaacccaagtgggtt 31789046  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 28562463 - 28562427
Alignment:
Q  23 tcccaagtcaataccactaggccaatccaaatgggtt 59  Q
    |||||||||||||||||||||||| |||||| |||||    
T  28562463 tcccaagtcaataccactaggccactccaaaggggtt 28562427  T

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