View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9685_low_9 (Length: 304)
Name: NF9685_low_9
Description: NF9685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9685_low_9 |
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| [»] scaffold0042 (1 HSPs) |
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| [»] scaffold0502 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 294
Target Start/End: Original strand, 47282125 - 47282404
Alignment:
| Q |
16 |
aaattgatggtggattgtactggtggtgaaggtgtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47282125 |
aaattgatggtggattgtactggtggtgaaggtgtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccat |
47282224 |
T |
|
| Q |
116 |
tcccttgtttccaagaactcatatatgatgttccaagcacgaaacaaatcattgatcatcctattctgctcatacaggtccaatcatgttaattcttcat |
215 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47282225 |
tcccttgcttccaagaactcatatatgatgttccaagcacgaaacaaatcattgatcatcctattctgctcatacaggtccaatcatgttaattcttcat |
47282324 |
T |
|
| Q |
216 |
ccttaatgttttgcaggcctcgccacagttttgacttaatcacca-ttttgtccttaaagttgtgactcagacagtatta |
294 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
47282325 |
ccttaatgttttgcaggcctcgccacacttttgacttaatcaccatttttgtccttaaagttgtgactcagacagtatta |
47282404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 47275390 - 47275604
Alignment:
| Q |
19 |
ttgatggtggattgtactggtggtgaaggtgtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattcc |
118 |
Q |
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||||||||||||||||| |||| | || ||||||||||||||||||||| ||||||| |||||| |||||||||||||||| || ||||||||||||| |
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| T |
47275390 |
ttgatggtggattgtaccggtg---agggagtcatgttcattgaagctgaaactgatgttacacttgatgaatttggtgatgcactgcatcccccattcc |
47275486 |
T |
|
| Q |
119 |
cttgtttccaagaactcatatatgatgttccaagcacgaaacaaatcattgatcatcctattctgctcatacaggtccaatcatgttaattc-ttcatcc |
217 |
Q |
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|||| ||||||||||||||||| ||||||||| |||| || ||||| ||||||||||| |||||||| ||||||||||||| |||||||||| |||| || |
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| T |
47275487 |
cttgcttccaagaactcatatacgatgttccaggcacaaaccaaattattgatcatcccattctgcttatacaggtccaattatgttaattctttcaacc |
47275586 |
T |
|
| Q |
218 |
ttaatgttttgcaggcct |
235 |
Q |
| |
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|||||||||||||||||| |
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| T |
47275587 |
ttaatgttttgcaggcct |
47275604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 47240826 - 47240954
Alignment:
| Q |
19 |
ttgatggtggattgtactggtggtgaaggtgtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattcc |
118 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||| ||||||| |
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| T |
47240826 |
ttgatggtggattgtactggt---gaaggtgtcatgttcattgaagctgaagctgatgtaacacttgatcaatttggtgatgctctgcatcctccattcc |
47240922 |
T |
|
| Q |
119 |
cttgtttccaagaactcatatatgatgttcca |
150 |
Q |
| |
|
|||| |||||| ||||| |||| ||||||||| |
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| T |
47240923 |
cttgcttccaacaactcttatacgatgttcca |
47240954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 150
Target Start/End: Complemental strand, 47296367 - 47296239
Alignment:
| Q |
19 |
ttgatggtggattgtactggtggtgaaggtgtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattcc |
118 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| || ||||| ||||||| |
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| T |
47296367 |
ttgatggtggattgtactggtg---aaggtgtcatgttcattgaagctgaagctgatgtaacacttgatcaatttggtgatgccctgcatcctccattcc |
47296271 |
T |
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| Q |
119 |
cttgtttccaagaactcatatatgatgttcca |
150 |
Q |
| |
|
|||| |||||| ||||| |||||||||||||| |
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| T |
47296270 |
cttgcttccaacaactcctatatgatgttcca |
47296239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 47300959 - 47300772
Alignment:
| Q |
19 |
ttgatggtggattgtactggtggtgaaggtgtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattcc |
118 |
Q |
| |
|
|||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||| || ||||||||||||| || ||||| ||||||| |
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| T |
47300959 |
ttgatggtggattgtactggcg---agggtgtcatgttcattgaagctgaagctgatgtaacacttgatcaatttggtgatgccctgcatcctccattcc |
47300863 |
T |
|
| Q |
119 |
cttgtttccaagaactcatatatgatgttccaagcacgaaacaaatcattgatcatcctattctgctcatacaggtccaatcatgttaatt |
209 |
Q |
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|||| ||||| ||||| |||||||||||| | || || ||||||| || || | ||| |||| ||||||||||| |||| || |||||| |
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| T |
47300862 |
cttgcttccatcaactcctatatgatgttcgaggctcggaacaaattatggaccgtcccattcgactcatacaggttcaattatattaatt |
47300772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 46 - 150
Target Start/End: Original strand, 47255802 - 47255906
Alignment:
| Q |
46 |
ggtgtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattcccttgtttccaagaactcatatatgatg |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| || |||||||||||||||| || || ||||| ||||| ||||||||| | ||| ||||| |
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| T |
47255802 |
ggtgtcatgttcattgaagctgaagctgatataacacttgatcaatttggtgatgctctgcaacctccatttccttgcttccaagaaattctatgtgatg |
47255901 |
T |
|
| Q |
146 |
ttcca |
150 |
Q |
| |
|
||||| |
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|
| T |
47255902 |
ttcca |
47255906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 194
Target Start/End: Original strand, 47264852 - 47264994
Alignment:
| Q |
52 |
atgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattcccttgtttccaagaactcatatatgatgttccaa |
151 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||| ||||||| ||||| ||| | ||||||||| |||| || ||| ||||||| |||| ||||||||| |
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|
| T |
47264852 |
atgttcgttgaagctgaagctgatgtaacccttgatgaattcggtgacgctttgcatcccccactcccatgcttcgaagaacttctatacgatgttccag |
47264951 |
T |
|
| Q |
152 |
gcacgaaacaaatcattgatcatcctattctgctcatacaggt |
194 |
Q |
| |
|
| || ||| ||| ||||| | ||| |||| ||||||||||| |
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| T |
47264952 |
gatcggaactaattattgaccgtcccattcgactcatacaggt |
47264994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 32729491 - 32729668
Alignment:
| Q |
19 |
ttgatggtggattgtactggtggtgaaggtgtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattcc |
118 |
Q |
| |
|
|||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||| || |||||||||||||||| ||||| ||||||| |
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| T |
32729491 |
ttgatggtggattgtactggtg---agggtgtcgtgttcattgaagctgaagctgatgtaacacttgatcaatttggtgatgctctgcatcctccattcc |
32729587 |
T |
|
| Q |
119 |
cttgtttccaagaactcatatatgatgttccaagcacgaaacaaatcattgatcatcctattctgctcatacaggtccaat |
199 |
Q |
| |
|
|||| |||||| ||||| |||| ||||||||| || | |||| || ||||| | ||| |||| |||||||||||||||| |
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|
| T |
32729588 |
cttgcttccaacaactcttatacgatgttccaggctcagaacatattattgaccgtcccattcgactcatacaggtccaat |
32729668 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 20511831 - 20511925
Alignment:
| Q |
22 |
atggtggattgtactggtggtgaaggtgtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattccc |
119 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||| |||| |||||||| | | | |||||||||||||| |
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| T |
20511831 |
atggtggattgtactggtg---agggtgtcatgttcattgaagctgaagctaatgtaacacttgatgactttggtgacggtttgcatcccccattccc |
20511925 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 14880118 - 14880039
Alignment:
| Q |
43 |
gaaggtgtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccattcccttg |
122 |
Q |
| |
|
|||||||| |||| ||||||||||| || ||||| || ||||| || |||||||||||||||||||| ||||| ||||| |
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|
| T |
14880118 |
gaaggtgttttgtttattgaagctgatgcagatgttactcttaaagagtttggtgatgctcttcatcctccatttccttg |
14880039 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 116
Target Start/End: Complemental strand, 91788 - 91715
Alignment:
| Q |
43 |
gaaggtgtcatgttcattgaagctgaagctgatgtaacacttaatgaatttggtgatgctcttcatcccccatt |
116 |
Q |
| |
|
|||||||| |||| ||||||||||| |||||||| || ||||| ||||||||||||| |||||||| ||||| |
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|
| T |
91788 |
gaaggtgttttgtttattgaagctgatgctgatgttactcttaaacaatttggtgatgcacttcatcctccatt |
91715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0502 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0502
Description:
Target: scaffold0502; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 84
Target Start/End: Complemental strand, 11576 - 11534
Alignment:
| Q |
42 |
tgaaggtgtcatgttcattgaagctgaagctgatgtaacactt |
84 |
Q |
| |
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||||||| ||||||||||||||||||| || |||||||||||| |
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|
| T |
11576 |
tgaaggtatcatgttcattgaagctgatgcagatgtaacactt |
11534 |
T |
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