View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9686_high_6 (Length: 339)
Name: NF9686_high_6
Description: NF9686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9686_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 37841499 - 37841830
Alignment:
| Q |
1 |
catcgtaatatgttttcagggactattccttcagctattggtaattgtagtaaactagaggaccttaacttatctttcaaccgtttgagaggtgaaattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37841499 |
catcgtaatatgttttcagggactattccttcagctattggtaattgtagtaaactagaggaccttaacttatctttcaaccgtttgagaggtgaaattc |
37841598 |
T |
|
| Q |
101 |
cagtctttgtttggagaatacaaagtcttttgcacatcttggttcacaacaacagcctctctggcgaactaccttttgagatgacagagctcaagtatct |
200 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37841599 |
cggtctttgtttggagaatacaaagtcttttgcacatcttggttcacaacaacagcctctctggagaactaccttttgagatgacagagctcaagtatct |
37841698 |
T |
|
| Q |
201 |
aagaaatatctcattgtttgataatcagttctcaggagtcatacctcaaagcttgggaatcaacagcagtatagtgaagttggactgtatgaataacaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37841699 |
aagaaatatctcattgtttgataatcagttctcaggagtcatacctcaaagcttgggaatcaacagcagtatagtgaagttggactgtatgaataacaag |
37841798 |
T |
|
| Q |
301 |
ttcaatggcaatatcccacccaatctctgctt |
332 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |
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|
| T |
37841799 |
ttcaatggcaatatcccacccaatctttgctt |
37841830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 332
Target Start/End: Original strand, 37835895 - 37836211
Alignment:
| Q |
16 |
tcagggactattccttcagctattggtaattgtagtaaactagaggaccttaacttatctttcaaccgtttgagaggtgaaattccagtctttgtttgga |
115 |
Q |
| |
|
|||||||||||||||||| || |||||||||| |||||| ||||||||||| | || ||||||||||| ||||||| ||||||| ||| |||||||| |
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|
| T |
37835895 |
tcagggactattccttcatctcttggtaattgcagtaaattagaggaccttgaattgtctttcaaccgactgagaggcaaaattccggtcagtgtttgga |
37835994 |
T |
|
| Q |
116 |
gaatacaaagtcttttgcacatcttggttcacaacaacagcctctctggcgaactaccttttgagatgacagagctcaagtatctaagaaatatctcatt |
215 |
Q |
| |
|
|||| ||||||| || ||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| ||||||||||||||| |||||||||||| |
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|
| T |
37835995 |
gaatttcaagtcttgtgaacatcttggttcacaacaacagcctctctggggaactgcctttcgagatgacaaagctcaagtatctaaaaaatatctcatt |
37836094 |
T |
|
| Q |
216 |
gtttgataatcagttctcaggagtcatacctcaaagcttgggaatcaacagcagtatagtgaagttggactgtatgaataacaagttcaatggcaatatc |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||| || |||||| |
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|
| T |
37836095 |
gtttgataatcagttctcaggagtcatacctcaaagcttaggaatcaacagcagaatagtgaagttggacggtatgaataacaagttcagcggtaatatc |
37836194 |
T |
|
| Q |
316 |
ccacccaatctctgctt |
332 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
37836195 |
ccacccaatctttgctt |
37836211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 37849270 - 37849578
Alignment:
| Q |
16 |
tcagggactattccttcagctattggtaattgtagtaaactagaggaccttaacttatctttcaaccgtttgagaggtgaaattccagtctttgtttgga |
115 |
Q |
| |
|
||||||||||||||| || || |||||||||| || ||| ||||||||||| | || |||||||||||||||||||| |||||||| ||| |||||||| |
|
|
| T |
37849270 |
tcagggactattcctacatctcttggtaattgcagcaaattagaggaccttgaattttctttcaaccgtttgagaggcgaaattccggtcagtgtttgga |
37849369 |
T |
|
| Q |
116 |
gaatacaaagtcttttgcacatcttggttcacaacaacagcctctctggcgaactaccttttgagatgacagagctcaagtatctaagaaatatctcatt |
215 |
Q |
| |
|
|||| ||||||| ||||||| ||||||||||||||||||||||| | ||||||||||| ||||||||| ||||||||||||||| |||||||||||| |
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|
| T |
37849370 |
gaatttcaagtcttgtgcacatattggttcacaacaacagcctctccagggaactacctttcgagatgacaaagctcaagtatctaaaaaatatctcatt |
37849469 |
T |
|
| Q |
216 |
gtttgataatcagttctcaggagtcatacctcaaagcttgggaatcaacagcagtatagtgaagttggactgtatgaataacaagttcaatggcaatatc |
315 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||| |||||| |
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|
| T |
37849470 |
gtttgataatcagttctcaggagtcacacctcaaagcttgggaataaacagcagcatagtgaagttggactgtatgaataacaagttcagtggtaatatc |
37849569 |
T |
|
| Q |
316 |
ccacccaat |
324 |
Q |
| |
|
||||||||| |
|
|
| T |
37849570 |
ccacccaat |
37849578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 5 - 326
Target Start/End: Original strand, 37830180 - 37830501
Alignment:
| Q |
5 |
gtaatatgttttcagggactattccttcagctattggtaattgtagtaaactagaggaccttaacttatctttcaaccgtttgagaggtgaaattccagt |
104 |
Q |
| |
|
||||||||||||||||||| ||||||||| || |||| ||||| |||||||| || |||||| | || ||||||||||||||||||||||||||||| || |
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|
| T |
37830180 |
gtaatatgttttcagggaccattccttcatctcttggcaattgcagtaaacttgaagaccttgatttgtctttcaaccgtttgagaggtgaaattccggt |
37830279 |
T |
|
| Q |
105 |
ctttgtttggagaatacaaagtcttttgcacatcttggttcacaacaacagcctctctggcgaactaccttttgagatgacagagctcaagtatctaaga |
204 |
Q |
| |
|
| | |||||||||| ||||||||| ||||||||||||||||||||||| |||| ||| ||||||||||| || || ||| | || |||| ||||| | |
|
|
| T |
37830280 |
cagtatttggagaattcaaagtcttgtgcacatcttggttcacaacaacgatctctttggggaactacctttggaaatcacaaaccttaagtgtctaaaa |
37830379 |
T |
|
| Q |
205 |
aatatctcattgtttgataatcagttctcaggagtcatacctcaaagcttgggaatcaacagcagtatagtgaagttggactgtatgaataacaagttca |
304 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
37830380 |
aatgtctcattgtttgaaaatcagttctcaggagtcatacctcaaagcttgggaatcaacagcagcatagtgaagttggactgtatgaataacaagttca |
37830479 |
T |
|
| Q |
305 |
atggcaatatcccacccaatct |
326 |
Q |
| |
|
||| ||||||||||| ||||| |
|
|
| T |
37830480 |
gtggtaatatcccaccaaatct |
37830501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 196 - 289
Target Start/End: Complemental strand, 26640842 - 26640749
Alignment:
| Q |
196 |
tatctaagaaatatctcattgtttgataatcagttctcaggagtcatacctcaaagcttgggaatcaacagcagtatagtgaagttggactgta |
289 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| || |||||||| ||||||| |
|
|
| T |
26640842 |
tatctatgaaatatctcattgtttgacaatcagttctcaggaggcatacctcaaagcttgggaatcaacagcagcattgtgaagttagactgta |
26640749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 5 - 332
Target Start/End: Original strand, 36864648 - 36864967
Alignment:
| Q |
5 |
gtaatatgttttcagggactattccttcagctattggtaattgtagtaaactagaggaccttaacttatctttcaaccgtttgagaggtgaaattccagt |
104 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||| || |||||||||||||||||| | || |||||||||||||||||||| |||||| | |
|
|
| T |
36864648 |
gtaatatgttttcagggactattccttcatctcttggtaactgcagtaaactagaggaccttgaattgtctttcaaccgtttgagaggaaaaattcaggc |
36864747 |
T |
|
| Q |
105 |
ctttgtttggagaatacaaagtcttttgcacatcttggttcacaacaacagcctctctggcgaactaccttttgagatgacagagctcaagtatctaaga |
204 |
Q |
| |
|
| | |||||||||| ||| ||| |||| |||||||||||| |||||||||||||||| ||||||||||| || ||||| | |||| |||||||| | |
|
|
| T |
36864748 |
cagtatttggagaatttcaagccttgtgcatatcttggttcaccacaacagcctctctggggaactacctttcgaaatgacgaacctcaggtatctaaaa |
36864847 |
T |
|
| Q |
205 |
aatatctcattgtttgataatcagttctcaggagtcatacctcaaagcttgggaatcaacagcagtatagtgaagttggactgtatgaataacaagttca |
304 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||| |||||||||||||||| | |
|
|
| T |
36864848 |
aatatctcat-------caatcagttctcaggagtcattcctcaaagcttgggaatcaacaataccttagtgaagttggac-gtatgaataacaagttta |
36864939 |
T |
|
| Q |
305 |
atggcaatatcccacccaatctctgctt |
332 |
Q |
| |
|
|||| ||||||||||| ||||| ||||| |
|
|
| T |
36864940 |
atggtaatatcccaccaaatctttgctt |
36864967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 178 - 326
Target Start/End: Original strand, 45560657 - 45560805
Alignment:
| Q |
178 |
gagatgacagagctcaagtatctaagaaatatctcattgtttgataatcagttctcaggagtcatacctcaaagcttgggaatcaacagcagtatagtga |
277 |
Q |
| |
|
|||||||||||||||||| | || | ||| |||||||||||||| || | |||||| ||||||||||||||||||||||||||||| |||||| | || |
|
|
| T |
45560657 |
gagatgacagagctcaagaacctcaaaaacatctcattgtttgacaacctgttctctggagtcatacctcaaagcttgggaatcaatagcagtttgttgc |
45560756 |
T |
|
| Q |
278 |
agttggactgtatgaataacaagttcaatggcaatatcccacccaatct |
326 |
Q |
| |
|
| || |||| ||| ||||| | ||||| |||||| ||||||||||||| |
|
|
| T |
45560757 |
aattagactttataaataataggttcactggcaacctcccacccaatct |
45560805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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