View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9686_high_7 (Length: 296)
Name: NF9686_high_7
Description: NF9686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9686_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 3 - 280
Target Start/End: Complemental strand, 44281411 - 44281134
Alignment:
| Q |
3 |
tggaacagaaatagggagttacatgaggattcttaaaacagcataattcatataagaagaagaggaataatatgtaactaacccaatatatttttcagtt |
102 |
Q |
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| T |
44281411 |
tggaacagaaatagggagttacatgaggattcttaaaacagcataattcatataagaagaagaggaataatatgtaactaacccaatatatgtttcagtt |
44281312 |
T |
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| Q |
103 |
gaaagattcaaacttgttagttagtactgctttgaaacaagttgcaatatttgaatagtcatctgaggcagtattttctcaggactatttttccacagat |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44281311 |
gaaagattcaaacttgttagttagtactgctttgaaacaagttgcaatatttgaatagtcatctgaggcagtattttctcaggactatttttccacagat |
44281212 |
T |
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| Q |
203 |
gaatgcgtcactcactattttctatcaaacaatgaaagaaaaactgatttaatacttgctccttttctgctttggttt |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44281211 |
gaatgcgtcactcactattttctatcaaacaatgaaagaaaaactgatttaatacttgctccttttctgctttggttt |
44281134 |
T |
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