View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9686_low_1 (Length: 627)
Name: NF9686_low_1
Description: NF9686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9686_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 591; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 1 - 611
Target Start/End: Complemental strand, 34137557 - 34136947
Alignment:
| Q |
1 |
agaccaaaactctcaatcattgaagccaaaggaattcccgtaattgacctctctccaatattccacaatgaagttccaaatccatctgatattgaaaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34137557 |
agaccaaaactctcaatcattgaagccaaaggaattcccgtaattgacctctctccaatattccacaatgaagttccaaatccatctgatattgaaaact |
34137458 |
T |
|
| Q |
101 |
tagtgaaggaaattggaagtgcatgcaaagagtggggtttcttccaagtcacaaaccatggagtcccttcgagtcttaggcagagacttgatgaagctgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34137457 |
tagtgaaggaaattggaagtgcatgcaaagagtggggtttcttccaagtcacaaaccatggagtcccttcgagtcttaggcagagacttgatgaagctgc |
34137358 |
T |
|
| Q |
201 |
taaattgttctttgctcagagtttggaggagaagaggaagattgctagagatgaaatcaatccaactggttattatgatacagaacacaccaaaaatgtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34137357 |
taaattgttctttgctcagagtttggaggagaagaggaaggttgctagagatgaaatcaatccaactggttattatgatacagaacacaccaaaaatgtt |
34137258 |
T |
|
| Q |
301 |
agggactggaaagaagtgcttgattttctcgccaacgatcccactttggttcctctgaattctgatgaaaacgatgatcaagttattcaatggtctaatc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34137257 |
agggactggaaagaagtgcttgattttctcgccaacgatcccactttggttcctctgaattctgatgaaaacgatgatcaatttattcaatggtctaatc |
34137158 |
T |
|
| Q |
401 |
catccccacaatacccttcacacttcaggtagttatatatttcatcttcaatggccatttcgattattcaaaagtatatttttaaaatttatgtgaacat |
500 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34137157 |
catccccacaattcccttcacacttcaggtagttatatatttcatcttcaatcgccatttagattattcaaaagtatatttttaaaatttatgtgaacat |
34137058 |
T |
|
| Q |
501 |
aagcagggctatagttgaagagtataatgaagagatggaaaagttggcttacaagttgcttgagctaatagctttgagcttaggagttgaagcaaagagg |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34137057 |
aagcagggctatagttgaagagtataatgaagagatggaaaagttggcttacaagttgcttgagctaatagctttgagcttaggagttgaagcaaagagg |
34136958 |
T |
|
| Q |
601 |
tttgaagagtt |
611 |
Q |
| |
|
||||||||||| |
|
|
| T |
34136957 |
tttgaagagtt |
34136947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 34133646 - 34133213
Alignment:
| Q |
1 |
agaccaaaactctcaatcattgaagccaaaggaattcccgtaattgacctctctccaatattccacaatgaagttccaaatccatctgatattgaaaact |
100 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||| | ||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
34133646 |
agaccaaaactctccatcatcgaagccaaaggaattcccgaaattgacctctctccaattcttcaccatgcagttccaaatccatctgatattgaaaact |
34133547 |
T |
|
| Q |
101 |
tagtgaaggaaattggaagtgcatgcaaagagtggggtttcttccaagtcacaaaccatggagtcccttcgagtcttaggcagagacttgatgaagctgc |
200 |
Q |
| |
|
| |||||||| |||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||| |||||| | |
|
|
| T |
34133546 |
tggtgaaggagattggaagtgcaagcaaggagtggggtttctttcaagtcacaaaccatggagtccctttgagtctaaggcagagacttgaggaagcttc |
34133447 |
T |
|
| Q |
201 |
taaattgttctttgctcagagtttggaggagaagaggaagattgctagagatgaaatcaatccaactggttattatgatacagaacacaccaaaaatgtt |
300 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||| |||||||||||||||||||| || |||||||||||| |
|
|
| T |
34133446 |
tagattgttctttgctcagagtttggaggagaagaagaaggttgctagagatgaggtcaatcctactggttattatgatacagagcataccaaaaatgtt |
34133347 |
T |
|
| Q |
301 |
agggactggaaagaagtgcttgattttctcgccaacgatcccactttggttcctctgaattctgatgaaaacgatgatcaagttattcaatggtctaatc |
400 |
Q |
| |
|
|| ||||||||||||||| |||||||||| | | ||||| || || ||||||| || |||||||||| | |||||| |||||||||||| |||||| |
|
|
| T |
34133346 |
agagactggaaagaagtgtttgattttctttctcaagatcctacattagttcctcggagttctgatgaacatgatgatggtgttattcaatggactaatc |
34133247 |
T |
|
| Q |
401 |
catccccacaatacccttcacacttcaggtagtt |
434 |
Q |
| |
|
||| || ||||| ||| |||| ||||||||||| |
|
|
| T |
34133246 |
aatcacctcaatatcctccacaattcaggtagtt |
34133213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 34141220 - 34140790
Alignment:
| Q |
1 |
agaccaaaactctcaatcattgaagccaaaggaattcccgtaattgacctctctccaatattccacaatgaagttccaaatccatctgatattgaaaact |
100 |
Q |
| |
|
|||||||||||||| |||| ||||||||||| ||||| | |||||| |||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
34141220 |
agaccaaaactctccctcatagaagccaaaggtattccagaaattgatctctctccaatattccacaatgaagttccaaatccatctgctattgaaagct |
34141121 |
T |
|
| Q |
101 |
tagtgaaggaaattggaagtgcatgcaaagagtggggtttcttccaagtcacaaaccatggagtcccttcgagtcttaggcagagacttgatgaagctgc |
200 |
Q |
| |
|
|||| ||||| ||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||| |||||| |||||||| |||||||||||||| |
|
|
| T |
34141120 |
tagtcaaggagattggaagtgcatgcaaagcgtggggattctttaaagtcacaaaccatggagtccctttgagtctcaggcagaggcttgatgaagctgc |
34141021 |
T |
|
| Q |
201 |
taaattgttctttgctcagagtttggaggagaagaggaagattgctagagatgaaatcaatccaactggttattatgatacagaacacaccaaaaatgtt |
300 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |||| ||||||||||||| |||| |||||||||||||||||| || |||| |||||| |||||| |
|
|
| T |
34141020 |
tagattgttctttgctcagagtttggaggagaagaagaaggttgctagagatgagatcattccaactggttattatgacactgaactcaccaagaatgtt |
34140921 |
T |
|
| Q |
301 |
agggactggaaagaagtgcttgattttctcgccaacgatcccactttggttcctctgaattctgatgaaaacgatgatcaagttattcaatggtctaatc |
400 |
Q |
| |
|
|| ||| |||||||||| |||||||| | |||| || | |||| ||||||| | | || ||||||| ||||||| |||||||||||||| ||||| |
|
|
| T |
34140920 |
agagacatgaaagaagtgtttgatttttacaccaatga---ccctttctttcctctcactcctcatgaaaatgatgatcgagttattcaatggtgtaatc |
34140824 |
T |
|
| Q |
401 |
catccccacaatacccttcacacttcaggtagtt |
434 |
Q |
| |
|
|| | || | |||||||||| ||||||||||||| |
|
|
| T |
34140823 |
caacacctccatacccttcaaacttcaggtagtt |
34140790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 34127373 - 34126967
Alignment:
| Q |
1 |
agaccaaaactctcaatcattgaagccaaaggaattcccgtaattgacctctctccaatattccacaatgaagttccaaatccatctgatattgaaaact |
100 |
Q |
| |
|
||||||||||| || |||||||||||| |||||||||||| |||||||||||| |||||||||||| ||||||||| | ||| ||||| |||||| | || |
|
|
| T |
34127373 |
agaccaaaactatccatcattgaagccgaaggaattcccgaaattgacctctcaccaatattccaccatgaagttcaagatcaatctgctattgatagct |
34127274 |
T |
|
| Q |
101 |
tagtgaaggaaattggaagtgcatgcaaagagtggggtttcttccaagtcacaaaccatggagtcccttcgagtcttaggcagagacttgatgaagctgc |
200 |
Q |
| |
|
| |||||| | ||||||||||||||||| || ||||| ||||| ||||| |||||||||| ||||||| |||| ||||||| ||||||||||||||||| |
|
|
| T |
34127273 |
tggtgaagaagattggaagtgcatgcaaggaatggggcttctttcaagttacaaaccatgaggtccctttgagtattaggcaaagacttgatgaagctgc |
34127174 |
T |
|
| Q |
201 |
taaattgttctttgctcagagtttggaggagaagaggaagattgctagagatgaaatcaatccaactggttattatgatacagaacacaccaaaaatgtt |
300 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||| | |||| |||| |||||||| |||| |||| |||||||| ||||| ||| |||||||| ||||| |
|
|
| T |
34127173 |
tagattgttctttgctcaaagtttggaggagaaaatgaaggttgccagagatgagatcacaccaattggttattttgataaagagcacaccaagaatgta |
34127074 |
T |
|
| Q |
301 |
agggactggaaagaagtgcttgattttctcgccaacgatcccactttggttcctctgaattctgatgaaaacgatgatcaagttattcaatggtctaatc |
400 |
Q |
| |
|
|| |||||| ||||||| |||||||| |||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34127073 |
agaaactggatagaagtgtttgattttttcgccagagatcccactttggttcctctgaattgtgatgaaaatgatgatcaagttattcaatggtctaatc |
34126974 |
T |
|
| Q |
401 |
catcccc |
407 |
Q |
| |
|
| ||||| |
|
|
| T |
34126973 |
cgtcccc |
34126967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 117 - 427
Target Start/End: Complemental strand, 34143587 - 34143277
Alignment:
| Q |
117 |
aagtgcatgcaaagagtggggtttcttccaagtcacaaaccatggagtcccttcgagtcttaggcagagacttgatgaagctgctaaattgttctttgct |
216 |
Q |
| |
|
|||||| ||||| || ||||||||||||||||| ||||| ||||| |||||| | | ||| |||| | | | || |||||| |||| ||||||| || |
|
|
| T |
34143587 |
aagtgcttgcaaggaatggggtttcttccaagttacaaatcatggtgtccctcccactctaaggctcaaaatggaagaagcttctaagatgttcttcgca |
34143488 |
T |
|
| Q |
217 |
cagagtttggaggagaagaggaagattgctagagatgaaatcaatccaactggttattatgatacagaacacaccaaaaatgttagggactggaaagaag |
316 |
Q |
| |
|
||||| ||||||| |||| ||||||| | | |||||| | | | |||||||| |||||||||| |||||||| ||||| || ||||||||||||| |
|
|
| T |
34143487 |
cagagcctggaggataagaagaagattaccacagatgataccggtttgcctggttatcatgatacagagcacaccaagaatgtaagagactggaaagaag |
34143388 |
T |
|
| Q |
317 |
tgcttgattttctcgccaacgatcccactttggttcctctgaattctgatgaaaacgatgatcaagttattcaatggtctaatccatccccacaataccc |
416 |
Q |
| |
|
|| ||||||||||| | || || || ||||||||||||||||||||||||||| ||||||||||||| | | | ||| ||||||||||||| |||||||| |
|
|
| T |
34143387 |
tgtttgattttctctctaatgaccctactttggttcctctgaattctgatgaacacgatgatcaagtcacttactggactaatccatcccctcaataccc |
34143288 |
T |
|
| Q |
417 |
ttcacacttca |
427 |
Q |
| |
|
| ||||||||| |
|
|
| T |
34143287 |
tccacacttca |
34143277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 481 - 608
Target Start/End: Complemental strand, 34131386 - 34131259
Alignment:
| Q |
481 |
tttaaaatttatgtgaacataagcagggctatagttgaagagtataatgaagagatggaaaagttggcttacaagttgcttgagctaatagctttgagct |
580 |
Q |
| |
|
||||||||| |||| |||| |||||||||||| |||||||||||| | ||||| |||||||| |||| || | |||||| |||||||||||| | |||| |
|
|
| T |
34131386 |
tttaaaattgatgtctacatgagcagggctatacttgaagagtatattcaagaggtggaaaagctggcatataggttgctggagctaatagctctaagct |
34131287 |
T |
|
| Q |
581 |
taggagttgaagcaaagaggtttgaaga |
608 |
Q |
| |
|
||||| |||||||||||||||||||||| |
|
|
| T |
34131286 |
taggacttgaagcaaagaggtttgaaga |
34131259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 481 - 608
Target Start/End: Complemental strand, 34126244 - 34126117
Alignment:
| Q |
481 |
tttaaaatttatgtgaacataagcagggctatagttgaagagtataatgaagagatggaaaagttggcttacaagttgcttgagctaatagctttgagct |
580 |
Q |
| |
|
||||||||| |||| ||||| |||||| |||| |||||||||||| | | ||||||||||| ||||| | |||||||| ||| ||||||||||||||| |
|
|
| T |
34126244 |
tttaaaattaatgtcaacatgagcaggaatataattgaagagtatattaaggagatggaaaatttggcctctaagttgctggagttaatagctttgagct |
34126145 |
T |
|
| Q |
581 |
taggagttgaagcaaagaggtttgaaga |
608 |
Q |
| |
|
|||| ||||||||| |||||||||||| |
|
|
| T |
34126144 |
tagggcttgaagcaatgaggtttgaaga |
34126117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 479 - 608
Target Start/End: Complemental strand, 34140237 - 34140108
Alignment:
| Q |
479 |
tttttaaaatttatgtgaacataagcagggctatagttgaagagtataatgaagagatggaaaagttggcttacaagttgcttgagctaatagctttgag |
578 |
Q |
| |
|
||||||||||| |||| ||||| || || | |||| |||||||||||| ||||||||||||||| |||| ||||| | ||||| |||||||| || |
|
|
| T |
34140237 |
tttttaaaattgatgtcaacatgagtagagttataattgaagagtatatcgaagagatggaaaagctggcccgtaagttattggagcttatagctttaag |
34140138 |
T |
|
| Q |
579 |
cttaggagttgaagcaaagaggtttgaaga |
608 |
Q |
| |
|
||||||| |||||||||||||||||||||| |
|
|
| T |
34140137 |
cttaggacttgaagcaaagaggtttgaaga |
34140108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 518 - 608
Target Start/End: Complemental strand, 34142847 - 34142757
Alignment:
| Q |
518 |
aagagtataatgaagagatggaaaagttggcttacaagttgcttgagctaatagctttgagcttaggagttgaagcaaagaggtttgaaga |
608 |
Q |
| |
|
||||||||| | |||||||||||||| | || | | |||||| ||||| |||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
34142847 |
aagagtatattaaagagatggaaaagctagcctttacgttgctagagctcatagctcttagcttaggagttgaagcaaagaggtttgaaga |
34142757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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