View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9686_low_20 (Length: 253)
Name: NF9686_low_20
Description: NF9686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9686_low_20 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 24193162 - 24192923
Alignment:
| Q |
14 |
caaaggagaagttcaatacaatggttgtagagttacaagaatatgaagcttggagttctaatggtgaaggttgtgatgaggagtaaagttcataattatg |
113 |
Q |
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| T |
24193162 |
caaaggagaagttcaatacaatggttgtagagttacaagaatatgaagcttggagttctaatggtgaaggttgtgatgaggagtaaagttcatagttatg |
24193063 |
T |
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| Q |
114 |
aaagctgtttggtttcatgtcttgtgagaataaacatgagtttatggtgtacccttaaagaagatccaatttcaagaaaagaaatttgaaggggatagtt |
213 |
Q |
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| T |
24193062 |
aaagctggttggtttcatgtcttgtgagaataaacatgagtttatggtgtacccttaaagaagatccaatttcaagaaaagaaatttgaaggggatagtt |
24192963 |
T |
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| Q |
214 |
tgatgcatccaatcacaaaggaatcaataaagaaagataa |
253 |
Q |
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| T |
24192962 |
tgatgcatccaatcacaaaggaatcaataaagaaagataa |
24192923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 101 - 253
Target Start/End: Complemental strand, 24191978 - 24191826
Alignment:
| Q |
101 |
gttcataattatgaaagctgtttggtttcatgtcttgtgagaataaacatgagtttatggtgtacccttaaagaagatccaatttcaagaaaagaaattt |
200 |
Q |
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||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24191978 |
gttcatagttatgaaagctggttggtttcatgtcttgtgagaataaacatgagtttatggtgtacccttaaagaagatccaatttcaagaaaagaaattt |
24191879 |
T |
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| Q |
201 |
gaaggggatagtttgatgcatccaatcacaaaggaatcaataaagaaagataa |
253 |
Q |
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| T |
24191878 |
gaaggggatagtttgatgcatccaatcacaaaggaatcaataaagaaagataa |
24191826 |
T |
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