View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9686_low_22 (Length: 249)
Name: NF9686_low_22
Description: NF9686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9686_low_22 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 697802 - 698030
Alignment:
| Q |
1 |
aaaatttaatttaatcttcagtttcttcatcttggagtaaagtgaatctgaagcattgctttgatccaatggctgcagtcaaaataataacacagtcaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
697802 |
aaaatttaatttaatcttcagtttcttcatcttggagtaaagtgaatctgaagcattgctttgatccaatggctgcagtcaaaataataacacagtcaca |
697901 |
T |
|
| Q |
101 |
aaaaccagtaagtaaatataagtaatttgactgtttaattccttgcaccccacgttccttggtcagcacggttccttgttattacaataatatataaact |
200 |
Q |
| |
|
| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
697902 |
acacc-----agtaaatataagtaatttgactgtttaattccttgcaccccacgttccttggtcagcacggttccttgttattacaataatatataaact |
697996 |
T |
|
| Q |
201 |
tcttctcacttctacttagaatcctagtcccccc |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
697997 |
tcttctcacttctacttagaatcctagtcccccc |
698030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 79
Target Start/End: Complemental strand, 9358548 - 9358508
Alignment:
| Q |
39 |
aaagtgaatctgaagcattgctttgatccaatggctgcagt |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9358548 |
aaagtgaatctgaagcattgctttgatccaatggctgcagt |
9358508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University