View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9686_low_25 (Length: 247)

Name: NF9686_low_25
Description: NF9686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9686_low_25
NF9686_low_25
[»] chr6 (33 HSPs)
chr6 (3-223)||(23882063-23882283)
chr6 (3-223)||(15930213-15930433)
chr6 (3-223)||(29253046-29253267)
chr6 (3-213)||(17863849-17864059)
chr6 (3-180)||(20465302-20465479)
chr6 (3-223)||(20653643-20653863)
chr6 (3-211)||(12039087-12039293)
chr6 (3-223)||(25805982-25806202)
chr6 (77-223)||(33666439-33666585)
chr6 (3-223)||(13869767-13869987)
chr6 (50-210)||(20989168-20989328)
chr6 (77-223)||(9281075-9281221)
chr6 (84-217)||(17855850-17855983)
chr6 (3-223)||(23879459-23879679)
chr6 (51-223)||(17235216-17235388)
chr6 (51-223)||(21705895-21706067)
chr6 (108-223)||(8465032-8465147)
chr6 (51-200)||(19100519-19100668)
chr6 (51-223)||(13195946-13196118)
chr6 (51-211)||(19077765-19077925)
chr6 (167-223)||(19598419-19598475)
chr6 (170-220)||(24564455-24564505)
chr6 (77-158)||(12028573-12028654)
chr6 (108-160)||(24542333-24542385)
chr6 (77-158)||(25970325-25970406)
chr6 (77-158)||(25974765-25974846)
chr6 (3-222)||(17527250-17527469)
chr6 (107-223)||(19172093-19172208)
chr6 (51-223)||(21722773-21722944)
chr6 (167-210)||(17868303-17868346)
chr6 (167-210)||(17878086-17878129)
chr6 (107-157)||(19894099-19894149)
chr6 (3-103)||(17876239-17876339)
[»] chr3 (18 HSPs)
chr3 (3-223)||(21253362-21253582)
chr3 (3-223)||(296015-296235)
chr3 (3-157)||(28051712-28051870)
chr3 (3-223)||(18063572-18063792)
chr3 (1-210)||(18482751-18482960)
chr3 (50-223)||(13514983-13515157)
chr3 (51-185)||(13791299-13791433)
chr3 (1-217)||(24196097-24196313)
chr3 (10-223)||(17135510-17135723)
chr3 (170-223)||(286265-286318)
chr3 (3-211)||(7028448-7028656)
chr3 (109-217)||(1918615-1918723)
chr3 (3-160)||(17042182-17042339)
chr3 (3-223)||(23953923-23954143)
chr3 (51-158)||(18548270-18548377)
chr3 (1-180)||(15572411-15572590)
chr3 (170-211)||(979758-979799)
chr3 (170-211)||(3551856-3551897)
[»] chr4 (8 HSPs)
chr4 (3-217)||(19183053-19183269)
chr4 (3-223)||(15699701-15699921)
chr4 (50-206)||(15161866-15162022)
chr4 (4-223)||(16384465-16384684)
chr4 (3-223)||(33898374-33898594)
chr4 (77-223)||(18601025-18601171)
chr4 (110-217)||(23399567-23399674)
chr4 (108-160)||(33746597-33746650)
[»] chr7 (22 HSPs)
chr7 (3-223)||(14927222-14927439)
chr7 (3-223)||(15350688-15350905)
chr7 (3-160)||(16437349-16437506)
chr7 (3-223)||(29545506-29545726)
chr7 (3-154)||(10280428-10280579)
chr7 (3-223)||(20992117-20992337)
chr7 (3-223)||(12326385-12326606)
chr7 (77-223)||(16207246-16207392)
chr7 (77-223)||(4459387-4459533)
chr7 (77-178)||(15506878-15506979)
chr7 (50-158)||(16222003-16222111)
chr7 (97-210)||(15438744-15438857)
chr7 (3-129)||(6045894-6046020)
chr7 (92-223)||(10661526-10661656)
chr7 (108-223)||(20924472-20924587)
chr7 (3-223)||(21261005-21261224)
chr7 (3-216)||(42636781-42636993)
chr7 (78-180)||(11520820-11520922)
chr7 (109-217)||(645813-645920)
chr7 (17-129)||(10038188-10038300)
chr7 (170-223)||(23082141-23082194)
chr7 (170-223)||(23960766-23960819)
[»] chr2 (7 HSPs)
chr2 (3-207)||(21530952-21531156)
chr2 (10-223)||(15328906-15329114)
chr2 (3-210)||(22611465-22611672)
chr2 (3-183)||(23759198-23759378)
chr2 (3-223)||(24789524-24789744)
chr2 (174-223)||(21249563-21249612)
chr2 (3-182)||(12911066-12911245)
[»] chr5 (15 HSPs)
chr5 (3-160)||(18221683-18221840)
chr5 (3-223)||(30605056-30605277)
chr5 (3-143)||(26328660-26328800)
chr5 (3-217)||(38405935-38406149)
chr5 (3-223)||(26037352-26037571)
chr5 (3-223)||(22082056-22082276)
chr5 (78-223)||(9421881-9422026)
chr5 (96-223)||(20714108-20714234)
chr5 (51-157)||(23419988-23420094)
chr5 (1-82)||(23624447-23624524)
chr5 (50-223)||(23757622-23757795)
chr5 (50-223)||(23823078-23823251)
chr5 (3-223)||(22251406-22251626)
chr5 (77-158)||(22404191-22404272)
chr5 (3-211)||(24190437-24190645)
[»] scaffold0003 (1 HSPs)
scaffold0003 (3-160)||(26979-27136)
[»] chr1 (14 HSPs)
chr1 (3-160)||(23477363-23477520)
chr1 (1-160)||(15803565-15803724)
chr1 (60-223)||(17850792-17850955)
chr1 (10-211)||(11667280-11667481)
chr1 (3-211)||(24986557-24986765)
chr1 (108-223)||(12753739-12753854)
chr1 (10-223)||(26971763-26971974)
chr1 (3-223)||(20840629-20840849)
chr1 (77-179)||(20200498-20200599)
chr1 (95-223)||(22891166-22891294)
chr1 (170-223)||(41330747-41330800)
chr1 (77-209)||(13166042-13166174)
chr1 (51-158)||(4246658-4246767)
chr1 (94-210)||(10339537-10339652)
[»] chr8 (9 HSPs)
chr8 (3-211)||(18622248-18622443)
chr8 (3-223)||(33977633-33977853)
chr8 (4-211)||(26536861-26537069)
chr8 (3-223)||(27924818-27925038)
chr8 (77-223)||(33962381-33962527)
chr8 (50-223)||(23540772-23540945)
chr8 (3-223)||(22485707-22485927)
chr8 (3-211)||(9997072-9997279)
chr8 (3-158)||(45136685-45136840)
[»] scaffold0213 (1 HSPs)
scaffold0213 (3-211)||(7956-8165)
[»] scaffold0190 (1 HSPs)
scaffold0190 (13-223)||(15986-16196)
[»] scaffold0226 (3 HSPs)
scaffold0226 (3-211)||(6917-7123)
scaffold0226 (1-223)||(17490-17712)
scaffold0226 (1-223)||(26884-27106)
[»] scaffold0453 (1 HSPs)
scaffold0453 (109-223)||(1366-1480)
[»] scaffold0259 (1 HSPs)
scaffold0259 (1-207)||(16707-16913)
[»] scaffold0359 (1 HSPs)
scaffold0359 (3-211)||(2464-2672)
[»] scaffold0129 (1 HSPs)
scaffold0129 (77-223)||(16153-16299)
[»] scaffold1001 (1 HSPs)
scaffold1001 (92-160)||(626-694)
[»] scaffold0088 (1 HSPs)
scaffold0088 (5-223)||(37166-37384)
[»] scaffold0037 (1 HSPs)
scaffold0037 (3-185)||(109662-109844)
[»] scaffold0103 (1 HSPs)
scaffold0103 (3-223)||(25043-25263)
[»] scaffold0069 (1 HSPs)
scaffold0069 (50-211)||(9295-9456)
[»] scaffold0024 (1 HSPs)
scaffold0024 (109-185)||(159751-159827)
[»] scaffold0006 (1 HSPs)
scaffold0006 (103-207)||(88420-88524)
[»] scaffold0185 (1 HSPs)
scaffold0185 (84-211)||(1745-1872)


Alignment Details
Target: chr6 (Bit Score: 153; Significance: 3e-81; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 23882283 - 23882063
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattc 102  Q
    |||||| |||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  23882283 aaagtcctaaaatgtaggaacatctttaggaacgtccaaaacagcttcaaatatttcctaaaatataatcacatctttaggaatattccacaactgattc 23882184  T
Q  103 tataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacact 202  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |  | ||  || |||||||||||||||||||||||||||||    
T  23882183 tataaagatatgcgcgttgcttggtcaataagataaggaaatatggtttccttaaataatataaagcacgtgtacaaacaggcatgaaacaaggcacact 23882084  T
Q  203 gaaccgtgctaggatattgga 223  Q
    ||||||||  ||||| |||||    
T  23882083 gaaccgtgtcaggatgttgga 23882063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 15930433 - 15930213
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattc 102  Q
    |||||| |||||||||||||||||||||||||||| ||||| | ||||||||||||  |||||||||||||||||||||||||| ||| | ||||||||     
T  15930433 aaagtcctaaaatgtaggaacatctttaggaacgtccaaaatagcttcaaatatttcgtaaaatataatcacatctttaggaatgttatataactgatta 15930334  T
Q  103 tataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacact 202  Q
    | |||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||| |  |  | ||| ||||||||| |||||||||||||||||||    
T  15930333 tgtaaagatatgtgcgttgcttggtcaataagataaggaaatatggtttccttaaatagtataaggcgcgtgtacaaacatgcatgaaacaaggcacact 15930234  T
Q  203 gaaccgtgctaggatattgga 223  Q
    ||||||||| ||||| |||||    
T  15930233 gaaccgtgccaggatgttgga 15930213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 29253267 - 29253046
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattc 102  Q
    |||||| ||||||||||||||||| ||||||||||  |||||| |||||||||||| |||||||||||||||  ||||||||||||| ||||||||||      
T  29253267 aaagtcctaaaatgtaggaacatcgttaggaacgtctaaaacagcttcaaatatttcctaaaatataatcactactttaggaatattccacaactgatca 29253168  T
Q  103 tataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtaca-aacaggcatgaaacaaggcacac 201  Q
    | |||||||||||||||||||||||||| ||||| || ||||| |||||||||||||| |     | ||||||||| |||| ||| || ||| |||||||    
T  29253167 tgtaaagatatgcgcgttgcttggtcaataagataagaaaatacggtttccttaaataatattaggcgcgcgtacataacaagcaagatacatggcacac 29253068  T
Q  202 tgaaccgtgctaggatattgga 223  Q
    |||||||||| ||||| |||||    
T  29253067 tgaaccgtgccaggatgttgga 29253046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 213
Target Start/End: Complemental strand, 17864059 - 17863849
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattc 102  Q
    |||||| |||||||| |||||||| |||||| ||| ||||||||   |||||||||||||||||||||  |   |||||| |||||| ||||||||| |     
T  17864059 aaagtcctaaaatgtcggaacatcattaggatcgtccaaaacaataacaaatattttctaaaatataaatattactttagaaatattccacaactgagta 17863960  T
Q  103 tataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacact 202  Q
    | |||||||||| |||||| |||||||| ||||| ||||||||| ||||||||||| | | ||| | || |||||||| ||||||||| | |||||  ||    
T  17863959 tgtaaagatatgtgcgttgtttggtcaataagataaggaaatattgtttccttaaacaataaagggcgcacgtacaaataggcatgaacccaggcagtct 17863860  T
Q  203 gaaccgtgcta 213  Q
    |||||||||||    
T  17863859 gaaccgtgcta 17863849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 3 - 180
Target Start/End: Complemental strand, 20465479 - 20465302
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattc 102  Q
    |||||| |||||||| ||||||||||||||| ||| | || |||   ||||||||| |||||||||||  ||  |||||| |||||| |||| |||||||    
T  20465479 aaagtcctaaaatgtcggaacatctttaggatcgttccaaccaataacaaatatttcctaaaatataaatactactttagaaatattccacagctgattc 20465380  T
Q  103 tataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaa 180  Q
    | |||||||||| ||||||||||||||| ||||| ||||||||| ||||||||||| | | ||||| |||||||||||    
T  20465379 tgtaaagatatgtgcgttgcttggtcaataagataaggaaatattgtttccttaaacaataaagagcgcgcgtacaaa 20465302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 20653643 - 20653863
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattc 102  Q
    |||||| |||||||| ||||||||||||||| ||| ||||||||   |||||||||  ||||||||||  |   |||||| |||||| |||| |||||||    
T  20653643 aaagtcctaaaatgttggaacatctttaggatcgtccaaaacaataacaaatatttcttaaaatataaatattactttagaaatattccacagctgattc 20653742  T
Q  103 tataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacact 202  Q
    | |||||||||| |||||||||| |||| ||||| ||||||||| ||||||||||| | | ||| | ||||||| ||  ||||||||| | || ||||||    
T  20653743 tgtaaagatatgtgcgttgcttgatcaataagataaggaaatattgtttccttaaacaataaagggcgcgcgtaaaagtaggcatgaacccagacacact 20653842  T
Q  203 gaaccgtgctaggatattgga 223  Q
    ||||||| | ||||| |||||    
T  20653843 gaaccgttccaggatcttgga 20653863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 211
Target Start/End: Complemental strand, 12039293 - 12039087
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattc 102  Q
    |||||| |||||||| ||||||||||||||| ||| ||||||||   ||||||||| |||||||||||  ||  |||||| |||||| |||| |||||||    
T  12039293 aaagtcctaaaatgtcggaacatctttaggatcgtccaaaacaataacaaatatttcctaaaatataaatactactttagaaatattccacagctgattc 12039194  T
Q  103 tataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacact 202  Q
    | |||||||||| | ||||||||||||| ||||| ||||||||| ||||||  ||| | | ||| | ||||||| ||  ||||||||| | || ||||||    
T  12039193 tgtaaagatatgtgtgttgcttggtcaataagataaggaaatattgtttcc--aaacaataaagggcgcgcgtaaaagtaggcatgaacccagacacact 12039096  T
Q  203 gaaccgtgc 211  Q
    |||||||||    
T  12039095 gaaccgtgc 12039087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 25805982 - 25806202
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattc 102  Q
    |||||| |||| ||| ||||||||||||||| |||  |||||||  | |||||| | |||||||||||   |  |||||  |||||| | ||| ||||||    
T  25805982 aaagtcctaaagtgtcggaacatctttaggatcgtctaaaacaatattaaatatctcctaaaatataaatgctactttaaaaatattcctcaattgattc 25806081  T
Q  103 tataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacact 202  Q
    | || ||||||||||||||||||||||| ||||| ||||||||| |||||||| || | ||||  |  | |||||| ||||||||||| | || ||||||    
T  25806082 tgtagagatatgcgcgttgcttggtcaataagataaggaaatattgtttccttcaacaatgaatggcacccgtacatacaggcatgaacccagacacact 25806181  T
Q  203 gaaccgtgctaggatattgga 223  Q
    ||||||||| ||||| |||||    
T  25806182 gaaccgtgccaggatgttgga 25806202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 77 - 223
Target Start/End: Original strand, 33666439 - 33666585
Alignment:
Q  77 ctttaggaatattacacaactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgta 176  Q
    |||||| |||||| |||||||||||||   ||| |||||||||| |||| |||| ||||| ||||||||| ||||||||||| | | ||| |||||||||    
T  33666439 ctttagaaatattccacaactgattcttagaagttatgcgcgttacttgatcaataagataaggaaatattgtttccttaaacaataaagggtgcgcgta 33666538  T
Q  177 caaacaggcatgaaacaaggcacactgaaccgtgctaggatattgga 223  Q
     ||||||||  |||   |||||||||||||||||| ||||| |||||    
T  33666539 aaaacaggcgagaactcaggcacactgaaccgtgccaggatgttgga 33666585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 13869987 - 13869767
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattc 102  Q
    |||||| |||||||| ||||||| | ||||| ||| | ||||||    |||||||| ||||||||||||  |  |||||| |||||| ||||||| ||||    
T  13869987 aaagtcctaaaatgtcggaacatttataggatcgttctaaacaataataaatatttcctaaaatataatatctactttagaaatattccacaactaattc 13869888  T
Q  103 tataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacact 202  Q
    |   |||||||||| |||||||| |||| ||||| ||||||||| || |||||||| | | ||| |||| |||||| | ||||  |||   | |||||||    
T  13869887 ttagaagatatgcgtgttgcttgatcaataagataaggaaatattgtgtccttaaacaataaagggtgcacgtacatataggcgagaactcaagcacact 13869788  T
Q  203 gaaccgtgctaggatattgga 223  Q
    ||||||||| ||||| |||||    
T  13869787 gaaccgtgccaggatgttgga 13869767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 50 - 210
Target Start/End: Complemental strand, 20989328 - 20989168
Alignment:
Q  50 caaatattttctaaaatataatcacatctttaggaatattacacaactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggt 149  Q
    ||||||||| |||||||||||   |  |||||| |||||| |||||||||||||   ||||||||||||||||| | |||| ||||  ||||||||| ||    
T  20989328 caaatatttcctaaaatataaaatctactttagaaatattccacaactgattcttagaagatatgcgcgttgctagatcaataagaaaaggaaatattgt 20989229  T
Q  150 ttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacactgaaccgtg 210  Q
    ||||||| | | | ||| | || |||||||  ||||||||| |||| ||||||||||||||    
T  20989228 ttccttatacaataaagcgcgctcgtacaagtaggcatgaaccaagacacactgaaccgtg 20989168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 223
Target Start/End: Complemental strand, 9281221 - 9281075
Alignment:
Q  77 ctttaggaatattacacaactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgta 176  Q
    |||||| |||||| |||| |||||||| | | ||||||||||||||||| |||| ||| | ||||||||| |||| |||||| | ||||| | ||| |||    
T  9281221 ctttagaaatatttcacagctgattctttgatgatatgcgcgttgcttgatcaataagttaaggaaatattgttttcttaaacaatgaagggcgcgtgta 9281122  T
Q  177 caaacaggcatgaaacaaggcacactgaaccgtgctaggatattgga 223  Q
    |||||||||  |||   |||||||||||| ||||| ||||| |||||    
T  9281121 caaacaggcgagaactcaggcacactgaatcgtgccaggatgttgga 9281075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 84 - 217
Target Start/End: Original strand, 17855850 - 17855983
Alignment:
Q  84 aatattacacaactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacag 183  Q
    |||||| |||| ||||||||   ||||||||||| ||||||| |||| ||| | || |||||| ||||||||||| | | ||| |||| ||||||||||     
T  17855850 aatattccacagctgattcttagaagatatgcgcattgcttgatcaataagttaagaaaatattgtttccttaaacaataaagggtgcacgtacaaacaa 17855949  T
Q  184 gcatgaaacaaggcacactgaaccgtgctaggat 217  Q
    ||| |||   ||||||||||||||||||||||||    
T  17855950 gcaagaactcaggcacactgaaccgtgctaggat 17855983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 23879459 - 23879679
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatc-acatctttaggaatattacacaactgatt 101  Q
    |||||| |||||||| ||||||| | ||||| ||| | ||||||  | |||||||| | |||||||||   ||| |||||| |||||| |||||||||||    
T  23879459 aaagtcctaaaatgtcggaacatttataggatcgttccaaacaatattaaatatttcccaaaatataaaataca-ctttagaaatattccacaactgatt 23879557  T
Q  102 ctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacac 201  Q
    ||   | |||||||| |||||||| |||| ||| | ||||||||| ||||||||||| | | ||| ||||| |||||||||||    ||   ||||||||    
T  23879558 cttagatgatatgcgtgttgcttgatcaataagttaaggaaatattgtttccttaaacaataaagggtgcgtgtacaaacaggtgaaaactcaggcacac 23879657  T
Q  202 tgaaccgtgctaggatattgga 223  Q
    |||||||||| ||||| |||||    
T  23879658 tgaaccgtgccaggatgttgga 23879679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 51 - 223
Target Start/End: Original strand, 17235216 - 17235388
Alignment:
Q  51 aaatattttctaaaatataatcacatctttaggaatattacacaactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtt 150  Q
    |||||||| ||||||||||||  |   ||||| |||||| |||| ||||||||   |||||||||| |||||||| |||| ||| | ||||||||| |||    
T  17235216 aaatatttcctaaaatataatatctaatttagaaatattccacatctgattcttagaagatatgcgtgttgcttgatcaataagttaaggaaatattgtt 17235315  T
Q  151 tccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacactgaaccgtgctaggatattgga 223  Q
    |||||||| | | | | | ||||||||||||| ||  |||   |||||||||||||||||| ||||| |||||    
T  17235316 tccttaaacaataacgggcgcgcgtacaaacatgcgagaactcaggcacactgaaccgtgccaggatgttgga 17235388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 51 - 223
Target Start/End: Complemental strand, 21706067 - 21705895
Alignment:
Q  51 aaatattttctaaaatataatcacatctttaggaatattacacaactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtt 150  Q
    |||||||| ||||||||||||  |  |||||| |||||| |||||||||||||   | ||||| |||||||||||||||| ||||| ||||||||| |||    
T  21706067 aaatatttcctaaaatataatatctactttagaaatattccacaactgattcttagatgatatacgcgttgcttggtcaataagataaggaaatattgtt 21705968  T
Q  151 tccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacactgaaccgtgctaggatattgga 223  Q
    | |||||| | | ||| | |||| || | | ||||| ||| | |||||||||||| | ||| | |||||||||    
T  21705967 tacttaaacaataaagggcgcgcataaatataggcaagaacccaggcacactgaagcatgccaagatattgga 21705895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 108 - 223
Target Start/End: Complemental strand, 8465147 - 8465032
Alignment:
Q  108 agatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacactgaacc 207  Q
    ||||||||||||||||||||||| ||||| ||||| ||| |||| |||||| | | ||| | ||||||||||  ||| ||||| | ||||||||| ||||    
T  8465147 agatatgcgcgttgcttggtcaataagataaggaactattgttttcttaaacaataaagggcgcgcgtacaagtaggaatgaacccaggcacactaaacc 8465048  T
Q  208 gtgctaggatattgga 223  Q
    |||| ||||| |||||    
T  8465047 gtgccaggatgttgga 8465032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 200
Target Start/End: Original strand, 19100519 - 19100668
Alignment:
Q  51 aaatattttctaaaatataatcacatctttaggaatattacacaactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtt 150  Q
    |||||||| |||||||||||   |  |||| | |||||| |||| ||||||||   |||||||| | |||||||| |||| ||||| ||||||||| |||    
T  19100519 aaatatttcctaaaatataaaatctactttggaaatattccacagctgattcttagaagatatgtgtgttgcttgatcaataagataaggaaatattgtt 19100618  T
Q  151 tccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcaca 200  Q
    |||||||| | | ||| ||||||||||||  ||||||||| | |||||||    
T  19100619 tccttaaacaataaagggtgcgcgtacaagtaggcatgaacctaggcaca 19100668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 223
Target Start/End: Original strand, 13195946 - 13196118
Alignment:
Q  51 aaatattttctaaaatataatcacatctttaggaatattacacaactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtt 150  Q
    |||||||| ||||||||||||  |  |||||| |||||| |||| ||||||||   ||||||||||||||||||| || |  |||| |  |||||| |||    
T  13195946 aaatatttcctaaaatataatatctactttagaaatattccacagctgattcttagaagatatgcgcgttgcttgatccattagataaacaaatattgtt 13196045  T
Q  151 tccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacactgaaccgtgctaggatattgga 223  Q
    |||||||| | | ||| | ||   |||||  ||||||||| | |||||||||||||||||| ||||| |||||    
T  13196046 tccttaaacaataaagggcgcatatacaagtaggcatgaacccaggcacactgaaccgtgccaggatgttgga 13196118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 211
Target Start/End: Original strand, 19077765 - 19077925
Alignment:
Q  51 aaatattttctaaaatataatcacatctttaggaatattacacaactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtt 150  Q
    |||||||| |||||||||||   |  |||||| |||||| |||| ||||||||   |||||||||| |||||||| |||| || || ||||||||| |||    
T  19077765 aaatatttcctaaaatataaaatctactttagaaatattccacagctgattcttagaagatatgcgtgttgcttgatcaataatataaggaaatattgtt 19077864  T
Q  151 tccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacactgaaccgtgc 211  Q
    |||||||| | ||||| | || ||||||   ||||||||    ||||||||||||||||||    
T  19077865 tccttaaacaatgaagggcgcacgtacatgtaggcatgagctcaggcacactgaaccgtgc 19077925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 19598419 - 19598475
Alignment:
Q  167 agtgcgcgtacaaacaggcatgaaacaaggcacactgaaccgtgctaggatattgga 223  Q
    |||||| |||||||||||||||||||||||||||||||||||||  ||||| |||||    
T  19598419 agtgcgtgtacaaacaggcatgaaacaaggcacactgaaccgtgtcaggatgttgga 19598475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 220
Target Start/End: Original strand, 24564455 - 24564505
Alignment:
Q  170 gcgcgtacaaacaggcatgaaacaaggcacactgaaccgtgctaggatatt 220  Q
    |||||||||| ||||||| ||||||||||||||||| ||||||||||||||    
T  24564455 gcgcgtacaatcaggcataaaacaaggcacactgaatcgtgctaggatatt 24564505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 158
Target Start/End: Complemental strand, 12028654 - 12028573
Alignment:
Q  77 ctttaggaatattacacaactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaa 158  Q
    |||||| |||||| |||| |||||||| || ||||||||| ||||||||| ||| | ||| ||||||||| |||||||||||    
T  12028654 ctttagaaatattccacagctgattctgtatagatatgcgtgttgcttggacaataggataaggaaatattgtttccttaaa 12028573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 24542333 - 24542385
Alignment:
Q  108 agatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaata 160  Q
    ||||||||| |||| |||||||| ||||| |||||||||||||||||||||||    
T  24542333 agatatgcgtgttggttggtcaataagataaggaaatatggtttccttaaata 24542385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 25970325 - 25970406
Alignment:
Q  77 ctttaggaatattacacaactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaa 158  Q
    |||||| |||||| |||| ||||||||   || ||||||||||||||| ||||| ||| | ||||||||| |||||||||||    
T  25970325 ctttagaaatattccacagctgattcttagaaaatatgcgcgttgcttagtcaataagttaaggaaatattgtttccttaaa 25970406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 25974765 - 25974846
Alignment:
Q  77 ctttaggaatattacacaactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaa 158  Q
    |||||| |||||| |||| ||||||||   || ||||||||||||||| ||||| ||| | ||||||||| |||||||||||    
T  25974765 ctttagaaatattccacagctgattcttagaaaatatgcgcgttgcttagtcaataagttaaggaaatattgtttccttaaa 25974846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 17527469 - 17527250
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatc-acatctttaggaatattacacaactgatt 101  Q
    |||||| |||||||| ||||||| | ||||| ||| | ||||||  | ||||||||  ||||||||||   ||| |||||| |||||| ||||  |||||    
T  17527469 aaagtcctaaaatgtcggaacatttataggatcgttccaaacaatattaaatatttcttaaaatataaaataca-ctttagaaatatttcacagttgatt 17527371  T
Q  102 ctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacac 201  Q
    ||   | ||||||||||||||||| |||| ||| | ||||||||| |||| |||||| | | ||| | ||| ||  ||||||||  |||   | ||||||    
T  17527370 cttagatgatatgcgcgttgcttgatcaataagttaaggaaatattgtttacttaaacaataaagggcgcgtgtggaaacaggcgagaactcaagcacac 17527271  T
Q  202 tgaaccgtgctaggatattgg 222  Q
    |||||||||| ||||||||||    
T  17527270 tgaaccgtgccaggatattgg 17527250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 223
Target Start/End: Original strand, 19172093 - 19172208
Alignment:
Q  107 aagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacactgaac 206  Q
    |||||||||||||| |||| |||| ||||| ||||||||  ||||||||||| | | ||| | ||||||||||  | ||||||| | |||| || |||||    
T  19172093 aagatatgcgcgttacttgatcaataagataaggaaataatgtttccttaaacaataaagggcgcgcgtacaagta-gcatgaacctaggctcattgaac 19172191  T
Q  207 cgtgctaggatattgga 223  Q
    ||||| ||||| |||||    
T  19172192 cgtgccaggatgttgga 19172208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 223
Target Start/End: Complemental strand, 21722944 - 21722773
Alignment:
Q  51 aaatattttctaaaatataatcacatctttaggaatattacacaactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtt 150  Q
    |||||||| ||||||||||||  |  |||||| ||||||  ||| ||||||||   | |||||  ||||||| ||||||| ||||| |||||| || |||    
T  21722944 aaatatttcctaaaatataatatctactttagaaatattctacagctgattcttagatgatatatgcgttgcctggtcaataagataaggaaagattgtt 21722845  T
Q  151 tccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacactgaaccgtgctaggatattgga 223  Q
    |||||||| | | ||| | ||||| ||| | ||||| ||| | |||||||||||||| ||| ||||| |||||    
T  21722844 tccttaaacaataaagggcgcgcg-acatataggcaagaacccaggcacactgaaccatgccaggatgttgga 21722773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 210
Target Start/End: Complemental strand, 17868346 - 17868303
Alignment:
Q  167 agtgcgcgtacaaacaggcatgaaacaaggcacactgaaccgtg 210  Q
    |||||||||||||  ||||||||||| |||||||||||||||||    
T  17868346 agtgcgcgtacaagtaggcatgaaaccaggcacactgaaccgtg 17868303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 210
Target Start/End: Complemental strand, 17878129 - 17878086
Alignment:
Q  167 agtgcgcgtacaaacaggcatgaaacaaggcacactgaaccgtg 210  Q
    |||||||||||||  ||||||||||| |||||||||||||||||    
T  17878129 agtgcgcgtacaagtaggcatgaaaccaggcacactgaaccgtg 17878086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 157
Target Start/End: Complemental strand, 19894149 - 19894099
Alignment:
Q  107 aagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaa 157  Q
    ||||||||||||||||||| |||| ||| | ||||||||| ||||||||||    
T  19894149 aagatatgcgcgttgcttgatcaataagttaaggaaatattgtttccttaa 19894099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 103
Target Start/End: Complemental strand, 17876339 - 17876239
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattc 102  Q
    |||||| |||||||| ||||||||||||||| || |||||| ||   |||| |||| |||||||||||  |   |||||| |||||| ||||||| ||||    
T  17876339 aaagtcctaaaatgtcggaacatctttaggatcgaacaaaaaaataacaaacatttcctaaaatataaatattactttagaaatattccacaactaattc 17876240  T
Q  103 t 103  Q
    |    
T  17876239 t 17876239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 141; Significance: 5e-74; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 21253582 - 21253362
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattc 102  Q
    ||||||||||||| || |||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  21253582 aaagtcataaaatataagaacatctttaggaacgtccaaaacagcttcaaatatttcctaaaatataatcacatctttaggaatattacacaactgattc 21253483  T
Q  103 tataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacact 202  Q
    | |||||||||||| ||||||||||||| ||||| ||||||||||| || |||||||| |  | ||  ||||||||||||||||||||||||||||||||    
T  21253482 tgtaaagatatgcgtgttgcttggtcaataagataaggaaatatgggtttcttaaataatataaagcacgcgtacaaacaggcatgaaacaaggcacact 21253383  T
Q  203 gaaccgtgctaggatattgga 223  Q
    ||||||||  ||||| |||||    
T  21253382 gaaccgtgtcaggatgttgga 21253362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 296015 - 296235
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattc 102  Q
    |||||| |||||||| ||||||||||||||| ||| ||||||||   ||||||||| |||||||||||   || ||||||||||||| |||  |||||||    
T  296015 aaagtcctaaaatgtcggaacatctttaggatcgtccaaaacaataacaaatatttcctaaaatataaatgcaactttaggaatattccacctctgattc 296114  T
Q  103 tataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacact 202  Q
    | |||||||| ||| ||||||||||||| ||||| ||||||||| ||||||||||| | | ||| | || |||||||| | ||||||| | |||||||||    
T  296115 tgtaaagatacgcgtgttgcttggtcaataagataaggaaatattgtttccttaaacaataaagggcgcacgtacaaatatgcatgaacccaggcacact 296214  T
Q  203 gaaccgtgctaggatattgga 223  Q
    ||||||||| ||||| |||||    
T  296215 gaaccgtgccaggattttgga 296235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 3 - 157
Target Start/End: Original strand, 28051712 - 28051870
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatat----aatcacatctttaggaatattacacaactg 98  Q
    |||||| |||||||| ||||||||||||||| ||| |||||||||||||||||||| |||||||||    ||||||| ||||||||||||| ||||||||    
T  28051712 aaagtcctaaaatgtcggaacatctttaggagcgtccaaaacaacttcaaatatttcctaaaatatatataatcacaactttaggaatattccacaactg 28051811  T
Q  99 attctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaa 157  Q
    ||||| |||||||| |||||||| |||||||| | ||| ||||||||| ||||||||||    
T  28051812 attctgtaaagatacgcgcgttgtttggtcaataggataaggaaatattgtttccttaa 28051870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 18063792 - 18063572
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattc 102  Q
    |||||| |||||||| | ||||||||||| ||||| ||||||||  | |||||||| |||||||||||  ||  |||||| |||||| | || |||||||    
T  18063792 aaagtcctaaaatgtcgaaacatctttagaaacgtccaaaacaatattaaatatttcctaaaatataaatactactttagaaatattcctcagctgattc 18063693  T
Q  103 tataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacact 202  Q
    | || | ||||||| ||||||||||||| ||||| ||||||||| ||||||||||| | ||||  | || |||||| | ||||| ||| |||||||||||    
T  18063692 tgtagaaatatgcgtgttgcttggtcaataagataaggaaatattgtttccttaaacaatgaaaggcgcacgtacatataggcaagaaccaaggcacact 18063593  T
Q  203 gaaccgtgctaggatattgga 223  Q
    ||||||||| ||||| |||||    
T  18063592 gaaccgtgccaggatgttgga 18063572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 18482960 - 18482751
Alignment:
Q  1 gaaaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatc-acatctttaggaatattacacaactga 99  Q
    |||||||| ||||||||  |||||| | ||||| ||| | ||||||    |||||||| |||||||||||   ||| |||||| |||||| ||||| |||    
T  18482960 gaaaagtcctaaaatgtcagaacatttataggatcgttccaaacaagaataaatatttcctaaaatataaaataca-ctttagaaatattccacaattga 18482862  T
Q  100 ttctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcac 199  Q
    ||||   ||||||||||||||||||| |||| ||||| ||||||||| ||||||||||| | | ||| ||||||||||||||||||  |||   || |||    
T  18482861 ttcttagaagatatgcgcgttgcttgatcaataagataaggaaatattgtttccttaaacaataaagggtgcgcgtacaaacaggcgagaactcagacac 18482762  T
Q  200 actgaaccgtg 210  Q
    |||||||||||    
T  18482761 actgaaccgtg 18482751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 223
Target Start/End: Complemental strand, 13515157 - 13514983
Alignment:
Q  50 caaatattttctaaaatataatcacatctttaggaatattacacaactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggt 149  Q
    ||||||||| |||||||||||   |  |||| | |||||| ||||||||||||| || |||||||||||||||||| |||| ||||| ||||||||| ||    
T  13515157 caaatatttcctaaaatataaaatctacttttgaaatattccacaactgattctgtatagatatgcgcgttgcttgatcaataagataaggaaatattgt 13515058  T
Q  150 ttccttaaatattgaagagtgcgcgtacaaacaggcatgaaac-aaggcacactgaaccgtgctaggatattgga 223  Q
    ||||||||| | | ||| | || || ||||  ||||| | |||  | |||||||||||||||||||||| |||||    
T  13515057 ttccttaaacaataaagggcgcacgcacaagtaggcaagtaactcaagcacactgaaccgtgctaggatgttgga 13514983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 185
Target Start/End: Original strand, 13791299 - 13791433
Alignment:
Q  51 aaatattttctaaaatataatcacatctttaggaatattacacaactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtt 150  Q
    |||||||| ||||||||||||     |||||| |||||| |||||||||||||   |||||||| |||||| ||| |||| ||||| ||||||||| |||    
T  13791299 aaatatttcctaaaatataatatttactttagaaatattccacaactgattcttagaagatatgtgcgttgtttgatcaataagataaggaaatattgtt 13791398  T
Q  151 tccttaaatattgaagagtgcgcgtacaaacaggc 185  Q
    |||||||| | | ||| | ||||||||||||||||    
T  13791399 tccttaaacaataaagggcgcgcgtacaaacaggc 13791433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 24196097 - 24196313
Alignment:
Q  1 gaaaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatc-acatctttaggaatattacacaactga 99  Q
    |||||||| |||||||| |||| || | ||||| ||| | ||||||  | |||||||| |||||||||||   ||| |||||| |||||| |||| ||||    
T  24196097 gaaaagtcctaaaatgtcggaatatttataggatcgttccaaacaatattaaatatttcctaaaatataaaataca-ctttagaaatattccacagctga 24196195  T
Q  100 ttctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcac 199  Q
    ||||   | ||||||||||||||||| |||| ||  | ||||||||| ||||||||||| | | |||  ||||| |||||||||||  |||   ||||||    
T  24196196 ttcttagatgatatgcgcgttgcttgatcaataaattaaggaaatattgtttccttaaacaataaaggatgcgcatacaaacaggcgagaactcaggcac 24196295  T
Q  200 actgaaccgtgctaggat 217  Q
    |||||||||||| |||||    
T  24196296 actgaaccgtgccaggat 24196313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 17135723 - 17135510
Alignment:
Q  10 taaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatc-acatctttaggaatattacacaactgattctataaa 108  Q
    |||||||| ||||||| | ||||| ||| | ||||||  | |||||||| |||||||||||   ||| |||||| |||||| |||| ||||||||   ||    
T  17135723 taaaatgtcggaacatttataggatcgttccaaacaatattaaatatttcctaaaatataaaataca-ctttagaaatattccacagctgattcttagaa 17135625  T
Q  109 gatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacactgaaccg 208  Q
    ||||||||||||||||| |||| ||| | ||||||||| ||||||||||| | | ||  | ||||||||| | ||||  |||   |||||||| ||||||    
T  17135624 gatatgcgcgttgcttgatcaataagttaaggaaatattgtttccttaaacaataaaaggcgcgcgtacatagaggcgagaactcaggcacaccgaaccg 17135525  T
Q  209 tgctaggatattgga 223  Q
    ||| ||||| |||||    
T  17135524 tgccaggatgttgga 17135510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 286318 - 286265
Alignment:
Q  170 gcgcgtacaaacaggcatgaaacaaggcacactgaaccgtgctaggatattgga 223  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||| |||||    
T  286318 gcgcgtacaaacatgcatgaaacaagacacactgaaccgtgctaggatgttgga 286265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 211
Target Start/End: Complemental strand, 7028656 - 7028448
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatc-acatctttaggaatattacacaactgatt 101  Q
    |||||| |||||||| ||||||| | ||||| ||| | ||||||  | |||||||| |||||||||||   ||| |||||| ||||||  ||  ||||||    
T  7028656 aaagtcctaaaatgtcggaacatttataggatcgttccaaacaatataaaatatttcctaaaatataaaataca-ctttagaaatattctacggctgatt 7028558  T
Q  102 ctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacac 201  Q
    ||   | ||||||||||||||||| |||| ||||| ||||||||| ||||||||||||| | ||| | || |||||||| ||||  |||   || |||||    
T  7028557 ctcagatgatatgcgcgttgcttgatcaataagataaggaaatattgtttccttaaataataaagggcgcacgtacaaataggcgagaactcagtcacac 7028458  T
Q  202 tgaaccgtgc 211  Q
    ||||||||||    
T  7028457 tgaaccgtgc 7028448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 109 - 217
Target Start/End: Complemental strand, 1918723 - 1918615
Alignment:
Q  109 gatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacactgaaccg 208  Q
    ||||||||||||||||| |||| ||| | ||||||||| ||||||||||| | | ||| | || |||||||||| ||  |||   |||||||||||||||    
T  1918723 gatatgcgcgttgcttgatcaataagttaaggaaatattgtttccttaaacaataaagggcgcacgtacaaacatgcgagaactcaggcacactgaaccg 1918624  T
Q  209 tgctaggat 217  Q
    |||||||||    
T  1918623 tgctaggat 1918615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 160
Target Start/End: Complemental strand, 17042339 - 17042182
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatcttt-aggaatattacacaact-gat 100  Q
    |||||| ||||| |||||||||||||||||||| | |||| ||| | |||||  || ||||||||| | || |||||| ||||||| || |  ||| |||    
T  17042339 aaagtcctaaaaagtaggaacatctttaggaacttccaaa-caaatccaaatgattcctaaaatattacca-atcttttaggaataataaaacacttgat 17042242  T
Q  101 tctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaata 160  Q
    | | || |||||||| | |||||||||||| ||||| |||||||||||||||||||||||    
T  17042241 tatgtacagatatgcacattgcttggtcaataagataaggaaatatggtttccttaaata 17042182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 23954143 - 23953923
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatc-acatctttaggaatattacacaactgatt 101  Q
    |||||| |||||||| ||||||| | ||| | ||| | ||||||  | |||||||| |||||||||||   ||| |||||| |||||| |||| ||||||    
T  23954143 aaagtcctaaaatgtcggaacatttatagtatcgttccaaacaatattaaatatttcctaaaatataaaataca-ctttagaaatattccacagctgatt 23954045  T
Q  102 ctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacac 201  Q
    ||   | || |||||||||| ||| |||| ||| | ||||||||| ||||||||||| | | ||| | || |||| ||||| ||  |||   ||||||||    
T  23954044 cttagatgacatgcgcgttgtttgatcaataagttaaggaaatattgtttccttaaacaataaagggcgcacgtataaacaagcgagaactcaggcacac 23953945  T
Q  202 tgaaccgtgctaggatattgga 223  Q
    |||||||||||||||| |||||    
T  23953944 tgaaccgtgctaggatgttgga 23953923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 158
Target Start/End: Original strand, 18548270 - 18548377
Alignment:
Q  51 aaatattttctaaaatataatcacatctttaggaatattacacaactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtt 150  Q
    |||||||| ||||||||||||  |  |||||| |||||| ||||  |||||||  |||||||||  ||||||||| |||| ||||| ||||||||| ||     
T  18548270 aaatatttcctaaaatataatatctactttagaaatattccacagttgattcttaaaagatatgtccgttgcttgatcaataagataaggaaatattgtg 18548369  T
Q  151 tccttaaa 158  Q
    ||||||||    
T  18548370 tccttaaa 18548377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 15572590 - 15572411
Alignment:
Q  1 gaaaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatc-acatctttaggaatattacacaactga 99  Q
    |||||||| |||||||| ||||||| | ||||| ||| | ||||||    |||||||| |||||||||||   ||| |||| | |||||| ||||  |||    
T  15572590 gaaaagtcttaaaatgtcggaacatttataggatcgttccaaacaataataaatatttcctaaaatataaaataca-cttttgaaatattccacagatga 15572492  T
Q  100 ttctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaa 180  Q
    ||||   ||||||| ||||||| ||| |||| ||||| ||||||||| ||||||||||| | | ||| ||| |||||||||    
T  15572491 ttcttagaagatatacgcgttggttgatcaataagataaggaaatattgtttccttaaacaataaagggtgtgcgtacaaa 15572411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 979799 - 979758
Alignment:
Q  170 gcgcgtacaaacaggcatgaaacaaggcacactgaaccgtgc 211  Q
    |||| ||||| ||||||| |||||||||||||||||||||||    
T  979799 gcgcatacaatcaggcataaaacaaggcacactgaaccgtgc 979758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 3551897 - 3551856
Alignment:
Q  170 gcgcgtacaaacaggcatgaaacaaggcacactgaaccgtgc 211  Q
    ||||| |||| ||||||| |||||||||||||||||||||||    
T  3551897 gcgcgaacaatcaggcataaaacaaggcacactgaaccgtgc 3551856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 3 - 217
Target Start/End: Complemental strand, 19183269 - 19183053
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattc 102  Q
    |||||| ||||||||||||  |||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19183269 aaagtcctaaaatgtaggaggatctttaggaacatccaaaacaacttcaaatattttctaaaatatgatcacatctttaggaatattacacaactgattc 19183170  T
Q  103 tataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaa-acaag-gcaca 200  Q
    |  ||||||||| |||||| |||||||||||||| ||||||||||||||||||||||| | ||||| ||| ||||||| |||||||||  || | |||||    
T  19183169 tgaaaagatatgtgcgttgtttggtcaagaagataaggaaatatggtttccttaaataataaagagcgcgtgtacaaataggcatgaactcatgcgcaca 19183070  T
Q  201 ctgaaccgtgctaggat 217  Q
    ||||||||||| |||||    
T  19183069 ctgaaccgtgccaggat 19183053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 15699921 - 15699701
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattc 102  Q
    |||||| |||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||| | |||| ||||||||||||| || | |||||||    
T  15699921 aaagtcctaaaatgtaggaacatctttaggagcgtccaaaacaacttcaaatatttcctaaaatatgaacacaactttaggaatattccaaagctgattc 15699822  T
Q  103 tataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacact 202  Q
      |||||||||||| ||| ||||||||| ||||| || | |||||||||||||| ||| |  |  | ||| |||| |||| ||| || ||| ||||||||    
T  15699821 attaaagatatgcgtgtttcttggtcaataagataagaatatatggtttccttatataatatatggcgcgtgtactaacatgcaagatacatggcacact 15699722  T
Q  203 gaaccgtgctaggatattgga 223  Q
    |||| |||| ||||| |||||    
T  15699721 gaactgtgccaggatgttgga 15699701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 50 - 206
Target Start/End: Complemental strand, 15162022 - 15161866
Alignment:
Q  50 caaatattttctaaaatataatcacatctttaggaatattacacaactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggt 149  Q
    ||||||||| |||||||||||  ||  |||||| |||||| |||| |||||||| |||||||||| ||||||||||||||| ||||| ||||||||| ||    
T  15162022 caaatatttcctaaaatataaatactactttagaaatattccacagctgattctgtaaagatatgtgcgttgcttggtcaataagataaggaaatattgt 15161923  T
Q  150 ttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacactgaac 206  Q
    ||||||||| | | ||| | ||| ||||||| |||| |||| | |||||||||||||    
T  15161922 ttccttaaacaataaagggcgcgtgtacaaataggcttgaacccaggcacactgaac 15161866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 16384465 - 16384684
Alignment:
Q  4 aagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatc-acatctttaggaatattacacaactgattc 102  Q
    ||||| |||||||| ||||||| | ||||| ||| | ||||||    |||||||| |||||||||||   ||| |||||| |||||| ||||||||||||    
T  16384465 aagtcctaaaatgttggaacatttataggatcgttccaaacaataataaatatttcctaaaatataaaataca-ctttagaaatattccacaactgattc 16384563  T
Q  103 tataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacact 202  Q
    |   |||||||||| |||| ||| |||| ||| | ||||||||| ||||||||||| | | ||| | ||||||||||||||||  ||| | |||||||||    
T  16384564 ttagaagatatgcgtgttgtttgatcaataagttaaggaaatattgtttccttaaacaataaagggcgcgcgtacaaacaggcgagaacccaggcacact 16384663  T
Q  203 gaaccgtgctaggatattgga 223  Q
    |||| |||  ||||| |||||    
T  16384664 gaactgtgtcaggatgttgga 16384684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 33898594 - 33898374
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatc-acatctttaggaatattacacaactgatt 101  Q
    |||||| |||||||| ||||||| | ||||| ||| | ||||||    |||||||| |||||||||||   ||| |||||| |||||| |||| ||||||    
T  33898594 aaagtcctaaaatgtcggaacatttataggatcgttccaaacaataataaatatttcctaaaatataaaataca-ctttagaaatattccacagctgatt 33898496  T
Q  102 ctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacac 201  Q
    ||   ||||||||||||||||||| |||| ||| | ||||||||| ||||||||||| | | ||| | ||||||||| ||||||  |||   ||||| ||    
T  33898495 cttagaagatatgcgcgttgcttgatcaataagttaaggaaatattgtttccttaaacaataaagggcgcgcgtacatacaggcgagaacgcaggcatac 33898396  T
Q  202 tgaaccgtgctaggatattgga 223  Q
    |||||||| | ||||| |||||    
T  33898395 tgaaccgtacgaggatgttgga 33898374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 223
Target Start/End: Complemental strand, 18601171 - 18601025
Alignment:
Q  77 ctttaggaatattacacaactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgta 176  Q
    |||||| |||||| |||| ||||||||   ||||||||||||||||||| |||| ||| | || |||||| ||||||||||| | | ||| | || | ||    
T  18601171 ctttagaaatatttcacagctgattcttagaagatatgcgcgttgcttgatcaataagttaagtaaatattgtttccttaaacaataaagggcgcacata 18601072  T
Q  177 caaacaggcatgaaacaaggcacactgaaccgtgctaggatattgga 223  Q
    ||| |||||  |||   |||||||||||||||||| ||||| |||||    
T  18601071 caaccaggcgagaactcaggcacactgaaccgtgccaggatgttgga 18601025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 110 - 217
Target Start/End: Complemental strand, 23399674 - 23399567
Alignment:
Q  110 atatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacactgaaccgt 209  Q
    ||||| |||||||||| |||| ||| | ||||||||| ||||||||||||| | ||| | ||||||||||||| ||  |||   ||||||||| ||||||    
T  23399674 atatgtgcgttgcttgatcaataagttaaggaaatattgtttccttaaataataaagggcgcgcgtacaaacaagcgagaactcaggcacactaaaccgt 23399575  T
Q  210 gctaggat 217  Q
    || |||||    
T  23399574 gccaggat 23399567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 33746597 - 33746650
Alignment:
Q  108 agatatgcgcgtt-gcttggtcaagaagattaggaaatatggtttccttaaata 160  Q
    ||||||||||||| |||||||||  ||||| |||||||||||||||||||||||    
T  33746597 agatatgcgcgtttgcttggtcagtaagataaggaaatatggtttccttaaata 33746650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 6e-58; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 14927222 - 14927439
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattc 102  Q
    |||||| |||||||||||||||||||||||| ||| ||| ||| |||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||    
T  14927222 aaagtcctaaaatgtaggaacatctttaggagcgtccaatacagcttcaaatatttcctaaa-tataatcacatctttaggaatattccacaactgattc 14927320  T
Q  103 tataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacact 202  Q
    | |||||||||||| ||||||||||||  ||||| || |||||||||||||||||||| | ||  | |||||||||||| | ||||| ||||||||||||    
T  14927321 tgtaaagatatgcgtgttgcttggtca--aagataagaaaatatggtttccttaaataataaaaggcgcgcgtacaaaccgacatgatacaaggcacact 14927418  T
Q  203 gaaccgtgctaggatattgga 223  Q
     |||||||| ||||| |||||    
T  14927419 aaaccgtgccaggatgttgga 14927439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 15350688 - 15350905
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattc 102  Q
    |||||| |||||||||||||||||||||||| ||| ||| ||| |||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||    
T  15350688 aaagtcctaaaatgtaggaacatctttaggagcgtccaatacagcttcaaatatttcctaaa-tataatcacatctttaggaatattccacaactgattc 15350786  T
Q  103 tataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacact 202  Q
    | |||||||||||| ||||||||||||  ||||| || |||||||||||||||||||| | ||  | |||||||||||| | ||||| ||||||||||||    
T  15350787 tgtaaagatatgcgtgttgcttggtca--aagataagaaaatatggtttccttaaataataaaaggcgcgcgtacaaaccgacatgatacaaggcacact 15350884  T
Q  203 gaaccgtgctaggatattgga 223  Q
     |||||||| ||||| |||||    
T  15350885 aaaccgtgccaggatgttgga 15350905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 3 - 160
Target Start/End: Original strand, 16437349 - 16437506
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattc 102  Q
    |||||| |||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||| |    
T  16437349 aaagtcctaaaatataggaacatctttaggaacgtccaaaacaacttcaaatatttcctaaaatataatcacaactttaggaatattccacaactgatcc 16437448  T
Q  103 tataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaata 160  Q
    |  ||||||||| |||||||||| |||| ||||| |||| ||||||||||||||||||    
T  16437449 tgcaaagatatgtgcgttgcttgatcaataagataaggacatatggtttccttaaata 16437506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 29545726 - 29545506
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattc 102  Q
    |||||| |||||||| ||||||||||||||| ||| ||||||||   ||||||||| |||||||||||  ||  ||||||||||||| ||||||||||||    
T  29545726 aaagtcctaaaatgtcggaacatctttaggatcgtccaaaacaataacaaatatttcctaaaatataaatactactttaggaatattccacaactgattc 29545627  T
Q  103 tataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacact 202  Q
    | ||||||||||| ||||||||| |||| |||||  |||||||| ||||||||||| | | ||| | ||||||||||| ||||||||| | || ||||||    
T  29545626 tgtaaagatatgcacgttgcttgatcaataagatacggaaatattgtttccttaaacaataaagggcgcgcgtacaaataggcatgaacccagacacact 29545527  T
Q  203 gaaccgtgctaggatattgga 223  Q
    ||||| ||||||||| |||||    
T  29545526 gaaccatgctaggatgttgga 29545506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 3 - 154
Target Start/End: Original strand, 10280428 - 10280579
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattc 102  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||  ||||||||||      
T  10280428 aaagtcctaaaatgtaggaacatctttaggaacgtccaaaacaacttcaaatatttcctaaaatataatcacaactttaggaatatgccacaactgatca 10280527  T
Q  103 tataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttcct 154  Q
    |||||||||||||| ||||||| ||||| ||||| ||||||||  |||||||    
T  10280528 tataaagatatgcgtgttgctttgtcaataagataaggaaatactgtttcct 10280579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 20992117 - 20992337
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattc 102  Q
    |||||| |||||||| ||||||||||||||| ||| | |  |||   ||||||||| |||||||||||  ||  |||||| ||||||  |||  |||||     
T  20992117 aaagtcctaaaatgtcggaacatctttaggatcgttccacccaataacaaatatttcctaaaatataaatactactttagaaatattcaacagttgattt 20992216  T
Q  103 tataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacact 202  Q
    | || ||||||||||||||||||||||| ||||| ||||||||| ||||||||||| | | ||||||||||||||||| ||||||||| | |||||||||    
T  20992217 tgtatagatatgcgcgttgcttggtcaataagataaggaaatattgtttccttaaacaataaagagtgcgcgtacaaataggcatgaacctaggcacact 20992316  T
Q  203 gaaccgtgctaggatattgga 223  Q
    ||||||||| ||||| |||||    
T  20992317 gaaccgtgccaggatgttgga 20992337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 12326385 - 12326606
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaactt-caaatattttctaaaatataatcacatctttaggaatattacacaactgatt 101  Q
    |||||| |||||||| ||||||||||||||| |||    ||||| |  |||||||||||||||||||||  ||  |||||| |||||| |||| || |||    
T  12326385 aaagtcctaaaatgtcggaacatctttaggatcgtttccaacaaataacaaatattttctaaaatataaatactactttagaaatattccacagctaatt 12326484  T
Q  102 ctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacac 201  Q
    |  || ||||||||||||| ||||||||| ||||| ||||||||| ||||||||||| | | ||||||||||||||||  ||||||||| | | ||||||    
T  12326485 cggtatagatatgcgcgtttcttggtcaataagataaggaaatattgtttccttaaacaataaagagtgcgcgtacaagtaggcatgaacccatgcacac 12326584  T
Q  202 tgaaccgtgctaggatattgga 223  Q
    |||||||||| ||||| |||||    
T  12326585 tgaaccgtgccaggatgttgga 12326606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 77 - 223
Target Start/End: Complemental strand, 16207392 - 16207246
Alignment:
Q  77 ctttaggaatattacacaactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgta 176  Q
    |||||| ||||||  ||||||||||||  ||||||||| | |||||||| |||| ||||| ||||||||| ||||||||||| | | ||| |||||||||    
T  16207392 ctttagaaatattcgacaactgattcttcaaagatatgtgtgttgcttgatcaacaagataaggaaatattgtttccttaaacaataaagggtgcgcgta 16207293  T
Q  177 caaacaggcatgaaacaaggcacactgaaccgtgctaggatattgga 223  Q
    |||  ||||||||| | |||||||||||||| ||| ||||| |||||    
T  16207292 caagtaggcatgaacccaggcacactgaaccatgccaggatgttgga 16207246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 77 - 223
Target Start/End: Original strand, 4459387 - 4459533
Alignment:
Q  77 ctttaggaatattacacaactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgta 176  Q
    |||||| |||||| |||| ||||||||  | |||||| |||||||||||| ||| ||| | ||||||||| |||||| |||| | | ||| | |||||||    
T  4459387 ctttagaaatattccacagctgattctggatagatattcgcgttgcttggacaataagttaaggaaatattgtttccataaacaataaagggcgcgcgta 4459486  T
Q  177 caaacaggcatgaaacaaggcacactgaaccgtgctaggatattgga 223  Q
    |||| ||||||||| | |||||||||||| ||||||||||| |||||    
T  4459487 caaataggcatgaacctaggcacactgaatcgtgctaggatgttgga 4459533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 178
Target Start/End: Original strand, 15506878 - 15506979
Alignment:
Q  77 ctttaggaatattacacaactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgta 176  Q
    |||||| |||||| |||||||||||||  |||||||||||| || ||||||||| ||||| || |||||| ||||||||||| | | ||||| |||||||    
T  15506878 ctttagaaatattccacaactgattcttcaaagatatgcgcatttcttggtcaataagataagaaaatattgtttccttaaacaataaagagcgcgcgta 15506977  T
Q  177 ca 178  Q
    ||    
T  15506978 ca 15506979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 50 - 158
Target Start/End: Complemental strand, 16222111 - 16222003
Alignment:
Q  50 caaatattttctaaaatataatcacatctttaggaatattacacaactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggt 149  Q
    ||||||||| |||||||||||   |  |||||| ||| || |||||||||||||  ||||||||| |||||||| |||||| ||||| ||||||||| ||    
T  16222111 caaatatttcctaaaatataaaacctactttagaaatttttcacaactgattcttcaaagatatgtgcgttgctaggtcaacaagataaggaaatattgt 16222012  T
Q  150 ttccttaaa 158  Q
    |||||||||    
T  16222011 ttccttaaa 16222003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 210
Target Start/End: Original strand, 15438744 - 15438857
Alignment:
Q  97 tgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaagg 196  Q
    |||||||  |||||||||||| |||||||||||| ||||| || |||||| ||||||||||| | | ||||||| |||||||   ||||| ||| | |||    
T  15438744 tgattcttcaaagatatgcgcattgcttggtcaataagataagaaaatattgtttccttaaacaataaagagtgtgcgtacaggtaggcaagaacccagg 15438843  T
Q  197 cacactgaaccgtg 210  Q
    |||||| |||||||    
T  15438844 cacacttaaccgtg 15438857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 129
Target Start/End: Original strand, 6045894 - 6046020
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatatta-cacaactgatt 101  Q
    |||||| ||| |||||||||||||||||||||| | | |||||  | |||||||| |||||||||| |||||   ||||||||||  | |||||||||||    
T  6045894 aaagtcctaatatgtaggaacatctttaggaac-ttccaaacatatccaaatattctctaaaatattatcactcttttaggaataacaccacaactgatt 6045992  T
Q  102 ctataaagatatgcgcgttgcttggtca 129  Q
    ||  | ||||||||||||||||| ||||    
T  6045993 ctgaatagatatgcgcgttgcttagtca 6046020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 92 - 223
Target Start/End: Original strand, 10661526 - 10661656
Alignment:
Q  92 acaactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaa 191  Q
    |||||||||||| || ||||||||||||||||||| ||  |||||  | |||   |||||||||||  |   ||||  ||||||||||| ||||||||||    
T  10661526 acaactgattctgtatagatatgcgcgttgcttggccaccaagatatgaaaacgaggtttccttaataagaaaagac-gcgcgtacaaataggcatgaaa 10661624  T
Q  192 caaggcacactgaaccgtgctaggatattgga 223  Q
      |||||||||||||||||||||||| |||||    
T  10661625 tcaggcacactgaaccgtgctaggatgttgga 10661656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 108 - 223
Target Start/End: Complemental strand, 20924587 - 20924472
Alignment:
Q  108 agatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacactgaacc 207  Q
    |||||||||||| |||||||||  ||||| ||||||||||||||||||||||| |  |  |   ||| | |||||| ||||||||||||||||||||| |    
T  20924587 agatatgcgcgtagcttggtcagcaagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatc 20924488  T
Q  208 gtgctaggatattgga 223  Q
     ||| ||||| |||||    
T  20924487 ttgccaggatgttgga 20924472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 21261005 - 21261224
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattac-acaactgatt 101  Q
    |||||||||| |||||||||||||||||||||| | |||| ||  | ||||||||  |||||||||  | ||  |||||| ||||  || ||||||||||    
T  21261005 aaagtcataatatgtaggaacatctttaggaacttccaaa-catatccaaatattccctaaaatattgttactcctttagaaataaaaccacaactgatt 21261103  T
Q  102 ctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacac 201  Q
    ||  | ||||||||||||||||||||||  |||||  |   |  ||| ||||||||  |   || || |||||||||| || |||| |||||||||||||    
T  21261104 ctgaacagatatgcgcgttgcttggtcagcaagatatgaggacgtggattccttaataagataa-agcgcgcgtacaatcaagcataaaacaaggcacac 21261202  T
Q  202 tgaaccgtgctaggatattgga 223  Q
    |||||||||| ||||| |||||    
T  21261203 tgaaccgtgccaggatgttgga 21261224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 216
Target Start/End: Original strand, 42636781 - 42636993
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatcttt-aggaatattaca-caactgat 100  Q
    |||||| ||||| |||||||||||||||||||  | |||| ||  | |||||| || ||||||||| | || |||||| ||||||| || | ||||||||    
T  42636781 aaagtcctaaaaagtaggaacatctttaggaatttccaaa-catatccaaataattcctaaaatattacca-atcttttaggaataataaaacaactgat 42636878  T
Q  101 tctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcaca 200  Q
    |||||| ||||||||||||||||||| ||  |||||  | |||   |||||||||||  |   ||||  ||||||||||| ||||||||||  || ||||    
T  42636879 tctatatagatatgcgcgttgcttggccaccaagatatgaaaacgaggtttccttaataagaaaaga-cgcgcgtacaaataggcatgaaagcagacaca 42636977  T
Q  201 ctgaaccgtgctagga 216  Q
    ||||||||||| ||||    
T  42636978 ctgaaccgtgccagga 42636993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 180
Target Start/End: Complemental strand, 11520922 - 11520820
Alignment:
Q  78 tttaggaatattacacaactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtac 177  Q
    ||||| |||||| |||||| ||||||   |||||||| |||||||||| |||| ||| | ||||||||| ||||||||||| | | ||| | ||||||||    
T  11520922 tttagaaatattccacaaccgattcttagaagatatgggcgttgcttgatcaataagttaaggaaatattgtttccttaaacaataaagggcgcgcgtac 11520823  T
Q  178 aaa 180  Q
    |||    
T  11520822 aaa 11520820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 217
Target Start/End: Original strand, 645813 - 645920
Alignment:
Q  109 gatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacactgaaccg 208  Q
    ||||||||||| ||||| |||| ||| | || |||||| ||||||||||| | | ||||  ||||||||||||||||  |||   |||||||||||||||    
T  645813 gatatgcgcgtagcttgatcaataagttaagaaaatattgtttccttaaacaataaaga-cgcgcgtacaaacaggcgagaactcaggcacactgaaccg 645911  T
Q  209 tgctaggat 217  Q
    ||| |||||    
T  645912 tgccaggat 645920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 10038300 - 10038188
Alignment:
Q  17 taggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatatta-cacaactgattctataaagatatgc 115  Q
    ||||||||||||||||||| | |||| ||  | ||||||||  ||||||||| |||||   ||||||||||  | |||||||||||||  | ||||||||    
T  10038300 taggaacatctttaggaacttccaaa-catatccaaatattccctaaaatattatcactcatttaggaataaaaacacaactgattctgaacagatatgc 10038202  T
Q  116 gcgttgcttggtca 129  Q
    ||| ||||||||||    
T  10038201 gcggtgcttggtca 10038188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 23082194 - 23082141
Alignment:
Q  170 gcgcgtacaaacaggcatgaaacaaggcacactgaaccgtgctaggatattgga 223  Q
    ||||||| || ||||||| ||| ||||||||||||||||||| ||||| |||||    
T  23082194 gcgcgtataatcaggcataaaataaggcacactgaaccgtgccaggatgttgga 23082141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 23960766 - 23960819
Alignment:
Q  170 gcgcgtacaaacaggcatgaaacaaggcacactgaaccgtgctaggatattgga 223  Q
    |||||||||| ||||||| ||| ||||||||||||| ||||| ||||| |||||    
T  23960766 gcgcgtacaatcaggcataaaataaggcacactgaatcgtgccaggatgttgga 23960819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 3 - 207
Target Start/End: Original strand, 21530952 - 21531156
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattc 102  Q
    |||||||||||||||||||||||||| ||||||||  | ||||  ||||||||||||||||||||||| |||||||||||||||||| |||||||||||     
T  21530952 aaagtcataaaatgtaggaacatcttcaggaacgtctataacagattcaaatattttctaaaatataaacacatctttaggaatattgcacaactgattt 21531051  T
Q  103 tataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacact 202  Q
    | || | ||||||  ||| ||||||||| ||||| ||||||||||||||||||||||| | ||  | ||||||||||||||||||||||||||||||||     
T  21531052 tgtatatatatgcatgttacttggtcaataagataaggaaatatggtttccttaaataataaaaggcgcgcgtacaaacaggcatgaaacaaggcacacc 21531151  T
Q  203 gaacc 207  Q
    |||||    
T  21531152 gaacc 21531156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 10 - 223
Target Start/End: Original strand, 15328906 - 15329114
Alignment:
Q  10 taaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattctataaag 109  Q
    ||||||||||||| |||||||||  ||| ||||||||||||||||||||||||||||| || |||| ||||||||||||||    ||||||  | ||  |    
T  15328906 taaaatgtaggaatatctttaggggcgtccaaaacaacttcaaatattttctaaaatacaaacacaactttaggaatatta----actgatcttgtagtg 15329001  T
Q  110 atatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacactgaaccgt 209  Q
    ||||||||||||||| ||||| ||||| ||||||||| ||||||||||||| |  || ||||||||||||||||||| || ||| ||||||| |||||||    
T  15329002 atatgcgcgttgcttagtcaataagataaggaaatattgtttccttaaatagtttag-gtgcgcgtacaaacaggcaagatacatggcacacagaaccgt 15329100  T
Q  210 gctaggatattgga 223  Q
    || ||||| |||||    
T  15329101 gccaggatgttgga 15329114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 210
Target Start/End: Original strand, 22611465 - 22611672
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatc-acatctttaggaatattacacaactgatt 101  Q
    |||||| |||||||| ||||||| | || || ||| | ||||||  | |||||||| |||||||||||   ||| |||||| |||||| || | ||||||    
T  22611465 aaagtcctaaaatgtcggaacatttataagatcgttccaaacaatattaaatatttcctaaaatataaaataca-ctttagaaatattccatagctgatt 22611563  T
Q  102 ctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacac 201  Q
    ||   ||||||||||||||||||| |||| ||| | ||||||||| ||||||||||| | | ||| | ||||||||||||||||  |||   || |||||    
T  22611564 cttagaagatatgcgcgttgcttgatcaataagttaaggaaatattgtttccttaaacaataaagggcgcgcgtacaaacaggcgagaactcagtcacac 22611663  T
Q  202 tgaaccgtg 210  Q
    |||||||||    
T  22611664 tgaaccgtg 22611672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 183
Target Start/End: Original strand, 23759198 - 23759378
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatc-acatctttaggaatattacacaactgatt 101  Q
    |||||| |||||||| ||||||| | ||||| ||| | ||||||  | |||||||| |||||||||||   ||| |||||| ||||||  ||||||||||    
T  23759198 aaagtcctaaaatgttggaacatttataggatcgttccaaacaatattaaatatttcctaaaatataaaataca-ctttagaaatattctacaactgatt 23759296  T
Q  102 ctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacag 183  Q
    ||   | ||||||| ||||||||| |||| ||| | ||||||||| ||||||||||| | | ||| | ||||||||||||||    
T  23759297 cttatatgatatgcacgttgcttgatcaataagttaaggaaatattgtttccttaaacaataaagggcgcgcgtacaaacag 23759378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 24789744 - 24789524
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatc-acatctttaggaatattacacaactgatt 101  Q
    |||||| |||||||| ||||||| | ||||| ||| | ||||||  | |||| ||| |||||||||||   ||| |||||| |||||| |||| ||||||    
T  24789744 aaagtcctaaaatgtcggaacatttataggatcgttccaaacaatattaaatttttcctaaaatataaaataca-ctttagtaatattccacagctgatt 24789646  T
Q  102 ctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacac 201  Q
    ||   | |||| || |||||||||||||| ||  | |||||||||  |||||||||| | | ||| | ||||||||||||||||  |||   ||||||||    
T  24789645 cttagatgataagcacgttgcttggtcaataaattaaggaaatatattttccttaaacaataaagggcgcgcgtacaaacaggcgagaactcaggcacac 24789546  T
Q  202 tgaaccgtgctaggatattgga 223  Q
    |||||||||| ||||| |||||    
T  24789545 tgaaccgtgccaggatgttgga 24789524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 21249612 - 21249563
Alignment:
Q  174 gtacaaacaggcatgaaacaaggcacactgaaccgtgctaggatattgga 223  Q
    |||||| |||||||||||||||||||||| |||||||| ||||| |||||    
T  21249612 gtacaatcaggcatgaaacaaggcacactaaaccgtgccaggatgttgga 21249563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 182
Target Start/End: Original strand, 12911066 - 12911245
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatc-acatctttaggaatattacacaactgatt 101  Q
    |||||| |||||||| ||||||| | ||||| ||| | ||||||    |||||||| |||||||||||   ||| |||||| |||||| |||| ||||||    
T  12911066 aaagtcctaaaatgtcggaacatttataggatcgttccaaacaataataaatatttcctaaaatataagataca-ctttagaaatatttcacagctgatt 12911164  T
Q  102 ctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaaca 182  Q
    ||   | |||| |||||||||||| |||| ||| | |||||||||  |||||||||| | | ||| | |||||||||||||    
T  12911165 cttagatgatacgcgcgttgcttgatcaataagttaaggaaatattatttccttaaacaataaagggcgcgcgtacaaaca 12911245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 3 - 160
Target Start/End: Original strand, 18221683 - 18221840
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattc 102  Q
    |||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |    
T  18221683 aaagtcctaaaatgtaggaacatctttaggaatgtccaaaacaacttcaaatattttctaaaatataatcacaactttaggaatattacacaactgatcc 18221782  T
Q  103 tataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaata 160  Q
    | |||||||||| | |||||||| |||| ||||| |||||||| ||||||||||||||    
T  18221783 tgtaaagatatgtgtgttgcttgatcaataagataaggaaatacggtttccttaaata 18221840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 30605277 - 30605056
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgt-acaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgatt 101  Q
    |||||| || ||||| ||||||||||||||| ||| ||||||||||||||||||||| ||||||||||| |||| ||||||||||||| |||||||||||    
T  30605277 aaagtcctataatgtcggaacatctttaggatcgtcacaaaacaacttcaaatatttcctaaaatataaacacaactttaggaatattccacaactgatt 30605178  T
Q  102 ctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacac 201  Q
    || ||||||||||||||||||||| |||| ||||| ||||||||| ||||||||||| | | ||| | || |||||||| | |||||||   ||||||||    
T  30605177 ctgtaaagatatgcgcgttgcttgatcaataagataaggaaatattgtttccttaaacaataaagggcgcccgtacaaataagcatgaactcaggcacac 30605078  T
Q  202 tgaaccgtgctaggatattgga 223  Q
    |||||||||| ||||| |||||    
T  30605077 tgaaccgtgccaggatgttgga 30605056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 3 - 143
Target Start/End: Complemental strand, 26328800 - 26328660
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattc 102  Q
    |||||| ||||||||  |||||||||||||| ||| ||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26328800 aaagtcctaaaatgtcagaacatctttaggagcgtccaaaacaacattaaatattttctaaaatataatcacaactttaggaatattacacaactgattc 26328701  T
Q  103 tataaagatatgcgcgttgcttggtcaagaagattaggaaa 143  Q
    |||||||||||| ||||| ||||||||| ||||| ||||||    
T  26328700 tataaagatatgtgcgttacttggtcaacaagataaggaaa 26328660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 3 - 217
Target Start/End: Original strand, 38405935 - 38406149
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattc 102  Q
    |||||| |||||||| ||| ||| ||||||| ||| ||||||||    |||||||| ||||||||||| ||   ||||||||||||| ||||||||||||    
T  38405935 aaagtcctaaaatgtcggatcatttttaggatcgtccaaaacaataaaaaatatttcctaaaatataaacattactttaggaatattccacaactgattc 38406034  T
Q  103 tataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacact 202  Q
    | ||||||||| |||||||||||||||| ||||| ||||||||| ||||||||||| | | ||| |  |||||||||||| ||| || ||| ||||||||    
T  38406035 tgtaaagatatacgcgttgcttggtcaataagataaggaaatattgtttccttaaacaataaagggcacgcgtacaaacaagcaagatacagggcacact 38406134  T
Q  203 gaaccgtgctaggat 217  Q
    |||||||||||||||    
T  38406135 gaaccgtgctaggat 38406149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 26037352 - 26037571
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattc 102  Q
    |||||| |||||||| ||||||||||||||| ||| ||||||||   ||||||||| |||||||||||  ||  ||||||||||||| |||||||||||     
T  26037352 aaagtcctaaaatgtcggaacatctttaggatcgtccaaaacaataacaaatatttcctaaaatataaatactactttaggaatattccacaactgattt 26037451  T
Q  103 tataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacact 202  Q
    | |||||||||||||||||||||||||| | ||| ||||||||| ||||||||||| | | ||| |||||||  |||| | ||||||| | |||||||||    
T  26037452 tgtaaagatatgcgcgttgcttggtcaataggataaggaaatattgtttccttaaacaataaagggtgcgcg-ccaaatatgcatgaaccgaggcacact 26037550  T
Q  203 gaaccgtgctaggatattgga 223  Q
    ||||| ||| ||||| |||||    
T  26037551 gaaccatgccaggatgttgga 26037571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 22082276 - 22082056
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattc 102  Q
    |||||| ||||||||  |||||||||||||| ||| ||||||||   ||||||||| ||||||||||| |||  ||||||||||||| |||||||||||     
T  22082276 aaagtcttaaaatgtcagaacatctttaggatcgtccaaaacaataacaaatatttcctaaaatataaacactactttaggaatattccacaactgatta 22082177  T
Q  103 tataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacact 202  Q
    | |||| ||||| ||||| ||||||||| |||||  |||||||| ||||||||||| | | ||| | || |||||||||| |||||||   | |||||||    
T  22082176 tgtaaatatatgtgcgttccttggtcaataagatagggaaatattgtttccttaaacaataaagggcgcacgtacaaacatgcatgaactcaagcacact 22082077  T
Q  203 gaaccgtgctaggatattgga 223  Q
    ||||||||| ||||| |||||    
T  22082076 gaaccgtgccaggatgttgga 22082056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 9422026 - 9421881
Alignment:
Q  78 tttaggaatattacacaactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtac 177  Q
    ||||| |||||| |||| ||||||||   ||||||||||  ||||||| |||| ||||| ||||||||| ||||||||||| | | | | | ||||||||    
T  9422026 tttagaaatatttcacagctgattcttagaagatatgcgtattgcttgatcaataagataaggaaatattgtttccttaaacaataaggggcgcgcgtac 9421927  T
Q  178 aaacaggcatgaaacaaggcacactgaaccgtgctaggatattgga 223  Q
    ||  ||||||||| | |||| ||||||||||||||||||| |||||    
T  9421926 aagtaggcatgaacccaggctcactgaaccgtgctaggatgttgga 9421881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 223
Target Start/End: Complemental strand, 20714234 - 20714108
Alignment:
Q  96 ctgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaag 195  Q
    |||||||| || ||||||||||||||||||||||  |||||  || || |||||||||||||| |   || || |||||||||||||||||||||| |||    
T  20714234 ctgattctgtacagatatgcgcgttgcttggtcagtaagatacgggaaaatggtttccttaaaaagataa-agcgcgcgtacaaacaggcatgaaagaag 20714136  T
Q  196 gcacactgaaccgtgctaggatattgga 223  Q
    ||||||| |||||| | ||||| |||||    
T  20714135 gcacactaaaccgttccaggatgttgga 20714108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 51 - 157
Target Start/End: Complemental strand, 23420094 - 23419988
Alignment:
Q  51 aaatattttctaaaatataatcacatctttaggaatattacacaactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtt 150  Q
    |||||||| |||||||||||  ||  |||||| |||||| |||||||||||||   ||||||||||| ||||||| |||| ||||| ||||||||| |||    
T  23420094 aaatatttcctaaaatataaaaactactttagaaatattccacaactgattcttagaagatatgcgcattgcttgatcaataagataaggaaatattgtt 23419995  T
Q  151 tccttaa 157  Q
    |||||||    
T  23419994 tccttaa 23419988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 23624447 - 23624524
Alignment:
Q  1 gaaaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttag 82  Q
    |||||||| |||||||||||||||||||||||||| | |||||||||    ||||||| |||||||||||||||| ||||||    
T  23624447 gaaaagtcctaaaatgtaggaacatctttaggaacttccaaaacaac----aatatttcctaaaatataatcacaactttag 23624524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 223
Target Start/End: Complemental strand, 23757795 - 23757622
Alignment:
Q  50 caaatattttctaaaatataatcacatctttaggaatattacacaactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggt 149  Q
    ||||||||| |||||||||||   |  |||||| |||||| |||| || |||||  ||||||||| | ||||||||||||| |  || ||||||||| ||    
T  23757795 caaatatttcctaaaatataaaatctactttagaaatattccacagctaattctccaaagatatgtgtgttgcttggtcaatacaataaggaaatattgt 23757696  T
Q  150 ttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacactgaaccgtgctaggatattgga 223  Q
    ||||||||| | | ||| |||||||||||   | ||||||| | || ||||||||| ||||| ||||| |||||    
T  23757695 ttccttaaacaataaagggtgcgcgtacatgtatgcatgaacctagacacactgaatcgtgccaggatgttgga 23757622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 223
Target Start/End: Complemental strand, 23823251 - 23823078
Alignment:
Q  50 caaatattttctaaaatataatcacatctttaggaatattacacaactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggt 149  Q
    ||||||||| |||||||||||   |  |||||| |||||| |||| || |||||  ||||||||| | ||||||||||||| |  || ||||||||| ||    
T  23823251 caaatatttcctaaaatataaaatctactttagaaatattccacagctaattctccaaagatatgtgtgttgcttggtcaatacaataaggaaatattgt 23823152  T
Q  150 ttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacactgaaccgtgctaggatattgga 223  Q
    ||||||||| | | ||| |||||||||||   | ||||||| | || ||||||||| ||||| ||||| |||||    
T  23823151 ttccttaaacaataaagggtgcgcgtacatgtatgcatgaacctagacacactgaatcgtgccaggatgttgga 23823078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 22251626 - 22251406
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatc-acatctttaggaatattacacaactgatt 101  Q
    |||||| |||||||| | ||||| | || || ||| ||||||||  | |||||||| |||||||||||   ||| |||||| |||||| |||| || |||    
T  22251626 aaagtcctaaaatgtcgcaacatttatacgatcgttcaaaacaatattaaatatttcctaaaatataaaataca-ctttagaaatattccacagctaatt 22251528  T
Q  102 ctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacac 201  Q
    ||   | ||||||||||||||||| | || ||| | ||||||||  |||||||||||   | ||| | ||||||||||||||||  |||   ||||||||    
T  22251527 cttggatgatatgcgcgttgcttgattaataagttaaggaaatactgtttccttaaacgataaagggcgcgcgtacaaacaggcgagaactcaggcacac 22251428  T
Q  202 tgaaccgtgctaggatattgga 223  Q
    |||||||||| ||||| |||||    
T  22251427 tgaaccgtgccaggatgttgga 22251406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 158
Target Start/End: Complemental strand, 22404272 - 22404191
Alignment:
Q  77 ctttaggaatattacacaactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaa 158  Q
    |||||| |||||| ||||  |||||||   ||||||||||| ||||||| |||| ||| | ||||||||| |||||||||||    
T  22404272 ctttagaaatatttcacagttgattcttagaagatatgcgctttgcttgatcaataagctaaggaaatattgtttccttaaa 22404191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 211
Target Start/End: Original strand, 24190437 - 24190645
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatc-acatctttaggaatattacacaactgatt 101  Q
    |||||| |||||||| ||||||| | ||||| ||| | ||| ||  | |||||||| |||||||||||   ||| |||||| ||||||  ||| ||||||    
T  24190437 aaagtcctaaaatgtcggaacatttataggatcgttccaaaaaatattaaatatttcctaaaatataaaataca-ctttagaaatattctacagctgatt 24190535  T
Q  102 ctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacac 201  Q
    ||   | |||||||||||| |||| |||| | ||| ||||||||| ||||||||||| | | | | | ||||||||||| ||||  |||   | ||||||    
T  24190536 cttagatgatatgcgcgttacttgatcaatatgataaggaaatattgtttccttaaacaataaggggcgcgcgtacaaataggcgagaactcaagcacac 24190635  T
Q  202 tgaaccgtgc 211  Q
    ||||||||||    
T  24190636 tgaaccgtgc 24190645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 3 - 160
Target Start/End: Original strand, 26979 - 27136
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattc 102  Q
    |||||| |||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||| |    
T  26979 aaagtcctaaaatataggaacatctttaggaacgtccaaaacaacttcaaatatttcctaaaatataatcacaactttaggaatattccacaactgatcc 27078  T
Q  103 tataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaata 160  Q
    |  ||||||||| |||||||||| |||| ||||| |||| ||||||||||||||||||    
T  27079 tgcaaagatatgtgcgttgcttgatcaataagataaggacatatggtttccttaaata 27136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 3 - 160
Target Start/End: Complemental strand, 23477520 - 23477363
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattc 102  Q
    |||||| || ||||||| ||||||||||||||||| |||| ||||||||||||||| |||||||||||||||| ||||||||||||| ||||| |||| |    
T  23477520 aaagtcctacaatgtagaaacatctttaggaacgtccaaatcaacttcaaatatttcctaaaatataatcacaactttaggaatattccacaattgatcc 23477421  T
Q  103 tataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaata 160  Q
    | ||||||||||| |||||||||||||| ||||| ||||||| |||||||||||||||    
T  23477420 tgtaaagatatgcacgttgcttggtcaataagataaggaaatgtggtttccttaaata 23477363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 15803724 - 15803565
Alignment:
Q  1 gaaaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgat 100  Q
    ||||| || |||||||||||| |||||||| ||| || ||| ||| |||||||||||| |||||||||||||||||||||||||||||| || |||||||    
T  15803724 gaaaaatcctaaaatgtaggatcatctttatgaatgtccaatacagcttcaaatatttcctaaaatataatcacatctttaggaatattccataactgat 15803625  T
Q  101 tctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaata 160  Q
    ||| ||||||||||||| ||| |||||||| ||||| |||||||||||||||||||||||    
T  15803624 tctgtaaagatatgcgcattgtttggtcaataagataaggaaatatggtttccttaaata 15803565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 60 - 223
Target Start/End: Complemental strand, 17850955 - 17850792
Alignment:
Q  60 ctaaaatataatcacatctttaggaatattacacaactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaat 159  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||    
T  17850955 ctaaaatataatcacatctttaggagtattacacaactgattctgtaaagatatgggcgttgcttggtcaataagataaggaaatatggtttccttaaat 17850856  T
Q  160 attgaagagtgcgcgtacaaacaggcatgaaacaaggcacactgaaccgtgctaggatattgga 223  Q
    | |  | || || || ||||||   ||||||  |||||||||||||||||| |||||| |||||    
T  17850855 aatataaagcgcacgcacaaactaacatgaactaaggcacactgaaccgtgttaggatgttgga 17850792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 11667481 - 11667280
Alignment:
Q  10 taaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattctataaag 109  Q
    |||||||| | ||||||||||||| ||| ||||||||   ||||||||| |||||||||||  ||  |||||| |||||| ||||||| ||||| |||||    
T  11667481 taaaatgttgtaacatctttaggatcgtccaaaacaataacaaatatttcctaaaatataaatactactttagaaatattccacaacttattctgtaaag 11667382  T
Q  110 atatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacactgaaccgt 209  Q
    ||||||||||||||||||||| ||||| ||||||||   |||||||||| | | ||| || |||||||||| ||||||||| | || |||||| ||| ||    
T  11667381 atatgcgcgttgcttggtcaataagataaggaaatagtttttccttaaacaataaagggtccgcgtacaaataggcatgaacccagacacacttaactgt 11667282  T
Q  210 gc 211  Q
    ||    
T  11667281 gc 11667280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 3 - 211
Target Start/End: Original strand, 24986557 - 24986765
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattc 102  Q
    |||||| |||||||| |||||||||||| || ||| ||||||||   ||||||||| |||||||||||  |   |||||| |||||| |||||||||||     
T  24986557 aaagtcctaaaatgtcggaacatctttatgatcgttcaaaacaaaaacaaatatttcctaaaatataaatattactttagaaatattccacaactgattt 24986656  T
Q  103 tataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaagg-cacac 201  Q
    | ||  |||||||||||||||||||||| ||||| || |||||| ||||||||||| | | ||| |||| | |||||| ||| ||| |||| || |||||    
T  24986657 tgtatggatatgcgcgttgcttggtcaataagataagaaaatattgtttccttaaacaataaagggtgcacatacaaataggtatg-aacacggtcacac 24986755  T
Q  202 tgaaccgtgc 211  Q
    ||||||||||    
T  24986756 tgaaccgtgc 24986765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 108 - 223
Target Start/End: Original strand, 12753739 - 12753854
Alignment:
Q  108 agatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaat-attgaagagtgcgcgtacaaacaggcatgaaacaaggcacactgaac 206  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||| ||| ||||||||||||  ||||  ||| | |||||||||||||    
T  12753739 agatatgcgcgttgcttggtcaataagataaggaaatatggtttccttaaataattcaag-gtgcgcgtacaagtaggctcgaacccaggcacactgaac 12753837  T
Q  207 cgtgctaggatattgga 223  Q
    ||||| ||||| |||||    
T  12753838 cgtgccaggatgttgga 12753854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 26971974 - 26971763
Alignment:
Q  10 taaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatc-acatctttaggaatattacacaactgattctataaa 108  Q
    |||||||| ||||||| | |||||  || | ||||||  | ||||||||||||||||||||   ||| |||||| ||||||  ||| ||||||||   ||    
T  26971974 taaaatgtcggaacatttataggatggttccaaacaatattaaatattttctaaaatataaaataca-ctttagaaatattcaacagctgattcttagaa 26971876  T
Q  109 gatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacactgaaccg 208  Q
    ||||||||||||||||| |||| ||| | ||||||||| ||||||||||| | | ||||  ||||||||||| ||||  |||   |||||||||||||||    
T  26971875 gatatgcgcgttgcttgatcaataagttaaggaaatattgtttccttaaacaataaaga--gcgcgtacaaataggcgagaactcaggcacactgaaccg 26971778  T
Q  209 tgctaggatattgga 223  Q
    ||| ||||| |||||    
T  26971777 tgccaggatgttgga 26971763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 20840849 - 20840629
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattc 102  Q
    |||||| |||||||| ||||||| | ||||| ||| | || |||   ||||||||| |||||||||||   |  |||||| |||||| |||||||||||     
T  20840849 aaagtcctaaaatgtcggaacatttataggatcgttccaaccaataacaaatatttcctaaaatataaaatctactttagaaatattccacaactgattt 20840750  T
Q  103 tataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacact 202  Q
    | || |||||||||||||||||| |||| ||||| |||||||||  |||| ||||| | | ||| | ||| ||||||  ||||| |||   |||||||||    
T  20840749 tttatagatatgcgcgttgcttgatcaataagataaggaaatattatttcattaaacaataaagggcgcgtgtacaagtaggcaagaactcaggcacact 20840650  T
Q  203 gaaccgtgctaggatattgga 223  Q
    |||| |||  ||||| |||||    
T  20840649 gaactgtgtcaggatgttgga 20840629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 179
Target Start/End: Complemental strand, 20200599 - 20200498
Alignment:
Q  77 ctttaggaatattacacaactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgta 176  Q
    |||||| |||||| ||||||||||||  || |||||||||||||||||| |||| |||| |||||||||| ||||||||||| | | ||| | |||||||    
T  20200599 ctttagaaatattccacaactgattccttagagatatgcgcgttgcttgatcaataaga-taggaaatattgtttccttaaacaataaagggcgcgcgta 20200501  T
Q  177 caa 179  Q
    |||    
T  20200500 caa 20200498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 223
Target Start/End: Complemental strand, 22891294 - 22891166
Alignment:
Q  95 actgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaa 194  Q
    |||||||||  ||||||||| | ||||||||||||| ||| | ||||||||| ||||||||||| | | |||   ||||||||||  ||||| |||   |    
T  22891294 actgattcttcaaagatatgtgtgttgcttggtcaataagttaaggaaatattgtttccttaaacaataaaggacgcgcgtacaagtaggcaagaactca 22891195  T
Q  195 ggcacactgaaccgtgctaggatattgga 223  Q
    ||||||||||||||||| ||||| |||||    
T  22891194 ggcacactgaaccgtgccaggatgttgga 22891166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 41330800 - 41330747
Alignment:
Q  170 gcgcgtacaaacaggcatgaaacaaggcacactgaaccgtgctaggatattgga 223  Q
    |||||||||| ||||||| |||||||||||||||||||||| |||||| |||||    
T  41330800 gcgcgtacaatcaggcataaaacaaggcacactgaaccgtgataggatgttgga 41330747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 209
Target Start/End: Original strand, 13166042 - 13166174
Alignment:
Q  77 ctttaggaatattacacaactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgta 176  Q
    |||||| |||||| |||||||||||||   | |||||| |||||||||| |||| ||| | ||||||||| ||||||||||| | | ||| | |||| ||    
T  13166042 ctttagaaatattccacaactgattcttagatgatatgtgcgttgcttgatcaataagttaaggaaatattgtttccttaaacaataaagggcgcgctta 13166141  T
Q  177 caaacaggcatgaaacaaggcacactgaaccgt 209  Q
    || ||||||  |||   ||||||||||||||||    
T  13166142 catacaggcgagaactcaggcacactgaaccgt 13166174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 158
Target Start/End: Original strand, 4246658 - 4246767
Alignment:
Q  51 aaatattttctaaaatataatcacatctttaggaatattacacaac--tgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatgg 148  Q
    |||||||| |||||||||||   |  |||||| |||||| ||||||  |||||||   |||||||||| |||||||| |||| ||||| ||||||||| |    
T  4246658 aaatatttcctaaaatataaaatctactttagaaatattccacaacgctgattcttagaagatatgcgtgttgcttgatcaataagataaggaaatattg 4246757  T
Q  149 tttccttaaa 158  Q
    ||||||||||    
T  4246758 tttccttaaa 4246767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 210
Target Start/End: Complemental strand, 10339652 - 10339537
Alignment:
Q  94 aactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaaca 193  Q
    |||||| ||| ||||||||||| ||||| |||||||  |||||  |  || |||| ||||||||| |   || ||||||||||||| ||| ||| |||||    
T  10339652 aactgaatctgtaaagatatgcacgttgtttggtcagcaagatatgagaacatggattccttaaaaagataa-agtgcgcgtacaatcagacataaaaca 10339554  T
Q  194 aggcacactgaaccgtg 210  Q
    |||||||||||||||||    
T  10339553 aggcacactgaaccgtg 10339537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 3 - 211
Target Start/End: Original strand, 18622248 - 18622443
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattc 102  Q
    |||||| |||| |||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||| |||||| |||||||||              
T  18622248 aaagtcctaaagtgtaggaacatctttaggaatgtccaaaacaacttcaaatatttcctaaaatataatcacacctttagaaatattaca---------- 18622337  T
Q  103 tataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacact 202  Q
       ||||||||| |||||| |||||||| ||||| |||||||||| |||||||||||| |  | || ||||||||| || |||| |||||||||||||||    
T  18622338 ---aaagatatgtgcgttgtttggtcaataagataaggaaatatgatttccttaaataatataaagcgcgcgtacacaccggcaagaaacaaggcacact 18622434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 33977633 - 33977853
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattc 102  Q
    |||||| |||||||| ||||||||| ||||| ||| |||| |||   ||||| ||| |||||| ||||  ||  ||||||||||||| ||||||||||||    
T  33977633 aaagtcctaaaatgtcggaacatctctaggatcgtccaaatcaataacaaatttttcctaaaaaataaatactactttaggaatattccacaactgattc 33977732  T
Q  103 tataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacact 202  Q
    | ||||||||||||| ||||||| |||| ||||| ||||||||| ||||||||||| | | ||| | || |||||||| ||||||||| | || ||||||    
T  33977733 tgtaaagatatgcgcattgcttgatcaataagataaggaaatattgtttccttaaacaataaagggcgcacgtacaaataggcatgaacccagacacact 33977832  T
Q  203 gaaccgtgctaggatattgga 223  Q
    |||| |||  ||||| |||||    
T  33977833 gaactgtgtcaggatgttgga 33977853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 4 - 211
Target Start/End: Original strand, 26536861 - 26537069
Alignment:
Q  4 aagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattct 103  Q
    ||||| |||||||| ||||||||||||| | ||| ||||||||   |||||||||  ||||||||||  ||  ||||||||||||| ||||||||||| |    
T  26536861 aagtcctaaaatgtcggaacatctttagtatcgtccaaaacaataacaaatatttcataaaatataaatactactttaggaatatttcacaactgatttt 26536960  T
Q  104 a-taaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacact 202  Q
      |||||||||||||||||||||||||| ||||| ||||||||| |||||||||||   | |   | || |||||||| ||||||||| | || ||||||    
T  26536961 tgtaaagatatgcgcgttgcttggtcaataagataaggaaatattgtttccttaaaccataagtggcgcacgtacaaataggcatgaacctagacacact 26537060  T
Q  203 gaaccgtgc 211  Q
    |||||||||    
T  26537061 gaaccgtgc 26537069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 27925038 - 27924818
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattc 102  Q
    |||||| |||||||| ||||||||||||||| ||| | || |||   |||||||||  ||||||||||   |  |||||| |||||| ||||  ||||||    
T  27925038 aaagtcctaaaatgtcggaacatctttaggatcgttccaaccaataacaaatatttcataaaatataaaatctactttagaaatattccacagttgattc 27924939  T
Q  103 tataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacact 202  Q
    | || ||||||||||||||||| ||||| ||||| ||||||||| ||||||||||| | | ||||| | ||||||||  ||||||||| | |||||||||    
T  27924938 tgtatagatatgcgcgttgctttgtcaataagataaggaaatattgtttccttaaacaataaagagcgtgcgtacaagtaggcatgaacccaggcacact 27924839  T
Q  203 gaaccgtgctaggatattgga 223  Q
    ||| ||||  ||||| |||||    
T  27924838 gaatcgtgtcaggatgttgga 27924818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 77 - 223
Target Start/End: Original strand, 33962381 - 33962527
Alignment:
Q  77 ctttaggaatattacacaactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgta 176  Q
    ||||||||||||| ||| ||||||||| ||||||||||||||||||||| |||| ||||| ||||||||| ||||||||||| | | ||| | |||||||    
T  33962381 ctttaggaatattccacgactgattctgtaaagatatgcgcgttgcttgatcaataagataaggaaatattgtttccttaaacaataaagggcgcgcgta 33962480  T
Q  177 caaacaggcatgaaacaaggcacactgaaccgtgctaggatattgga 223  Q
    |||| || |||||    ||||||||||||| |||| ||||| |||||    
T  33962481 caaagagacatgacctcaggcacactgaactgtgccaggatgttgga 33962527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 223
Target Start/End: Complemental strand, 23540945 - 23540772
Alignment:
Q  50 caaatattttctaaaatataatcacatctttaggaatattacacaactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggt 149  Q
    ||||||||| |||||||||||   |  |||||| |||||| |||| ||||||||   ||||||||||||||||||  |||| ||||| ||||||||| ||    
T  23540945 caaatatttcctaaaatataaaatctactttagaaatattccacagctgattcttagaagatatgcgcgttgcttaatcaataagataaggaaatattgt 23540846  T
Q  150 ttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacactgaaccgtgctaggatattgga 223  Q
    ||||||||| | | ||| | ||||||||||  |||||| || | ||||||||| ||| |||| ||||| |||||    
T  23540845 ttccttaaacaataaagggcgcgcgtacaagtaggcataaacccaggcacactaaactgtgccaggatgttgga 23540772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 22485707 - 22485927
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatc-acatctttaggaatattacacaactgatt 101  Q
    |||||| |||||||| ||||||| | ||||| ||| | ||||||  | |||||||| |||||||||||   ||| |||||| |||||| |||| ||||||    
T  22485707 aaagtcctaaaatgtcggaacatttataggatcgttctaaacaatattaaatatttcctaaaatataaaataca-ctttagaaatattccacagctgatt 22485805  T
Q  102 ctataaagatatgcgcgttgcttggtcaagaagattaggaaa-tatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcaca 200  Q
    ||  || |||||||| |||||||| |||| ||| |||||||| ||| ||||||||||| | | ||| | |||||||||||||| |  |||   |||||||    
T  22485806 cttaaatgatatgcgtgttgcttgatcaataag-ttaggaaaatattgtttccttaaacaataaagggcgcgcgtacaaacagacgagaactcaggcaca 22485904  T
Q  201 ctgaaccgtgctaggatattgga 223  Q
    |||||| |||| ||||| |||||    
T  22485905 ctgaactgtgccaggatgttgga 22485927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 211
Target Start/End: Original strand, 9997072 - 9997279
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatcttt-aggaatattaca-caactgat 100  Q
    |||||| ||||| ||||||||||||||| |||| | |||| ||  | |||||| || ||||||||| |||| |||||| ||||||| || | ||||||||    
T  9997072 aaagtcctaaaaagtaggaacatctttatgaacttccaaa-catatccaaataattcctaaaatattatca-atcttttaggaataataaaacaactgat 9997169  T
Q  101 tctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcaca 200  Q
    | | || ||||||||||||||||||||||  |||||  | |||   |||||||||||  |   ||||  ||||||||||| ||||||||||  |||||||    
T  9997170 tatgtacagatatgcgcgttgcttggtcaccaagatatgaaaacgaggtttccttaataagaaaaga-cgcgcgtacaaataggcatgaaatcaggcaca 9997268  T
Q  201 ctgaaccgtgc 211  Q
    |||||||||||    
T  9997269 ctgaaccgtgc 9997279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 158
Target Start/End: Original strand, 45136685 - 45136840
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacat-ctttaggaatattacacaactgatt 101  Q
    |||||| |||||||| ||||||| | ||||| ||| | || |||   ||||||||| |||||||||||  | || |||||| |||||| |||| ||||||    
T  45136685 aaagtcctaaaatgtcggaacatttataggatcgttccaaccaataacaaatatttcctaaaatataaa-atatactttagaaatattccacagctgatt 45136783  T
Q  102 ctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaa 158  Q
    ||  |||||||| ||| |||||| ||||| ||||| | ||||||| |||||||||||    
T  45136784 cttcaaagatatacgcattgctttgtcaataagataatgaaatattgtttccttaaa 45136840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 3 - 211
Target Start/End: Complemental strand, 8165 - 7956
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaactt-caaatattttctaaaatataatcacatctttaggaatattacacaactgatt 101  Q
    |||||| |||||||| ||||||||||||||| ||| |  ||| | |  ||||||||| |||||||||||  ||  |||||| | |||| |||| ||||||    
T  8165 aaagtcctaaaatgtcggaacatctttaggatcgtccccaaccaataacaaatatttcctaaaatataaatactactttagaagtattccacagctgatt 8066  T
Q  102 ctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacac 201  Q
    ||||||||||||| ||||||||||||||| ||||| ||||||||| ||||||||||| | | ||||| | ||||||||| ||||||||| | ||||||||    
T  8065 ctataaagatatgtgcgttgcttggtcaataagataaggaaatattgtttccttaaacaataaagagcgggcgtacaaataggcatgaacccaggcacac 7966  T
Q  202 tgaaccgtgc 211  Q
    ||||| ||||    
T  7965 tgaacagtgc 7956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 223
Target Start/End: Complemental strand, 16196 - 15986
Alignment:
Q  13 aatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattctataaagata 112  Q
    ||||| ||||||||||||||| ||| | || |||   ||||||||||||||||||||||  |  |||||| ||||||  ||| |||||||| || |||||    
T  16196 aatgtcggaacatctttaggatcgttccaaccaataacaaatattttctaaaatataatatctactttagaaatattcaacatctgattctgtatagata 16097  T
Q  113 tgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacactgaaccgtgct 212  Q
    ||||| |||||||||||| ||||| | ||||||| ||||||||||| | | ||||| || |||||||  ||| ||||| | |||||||| |||||||||     
T  16096 tgcgcattgcttggtcaataagataatgaaatattgtttccttaaacaataaagagcgcacgtacaagtaggaatgaacccaggcacaccgaaccgtgcc 15997  T
Q  213 aggatattgga 223  Q
    ||||| |||||    
T  15996 aggatgttgga 15986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 3 - 211
Target Start/End: Complemental strand, 7123 - 6917
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattc 102  Q
    |||||| |||||||| ||||||||||||||| ||| | || |||   ||||||||| |||||||||||  ||  |||||| |||||| || ||||||||     
T  7123 aaagtcctaaaatgttggaacatctttaggatcgttccaaccaataacaaatatttcctaaaatataaatactactttagaaatattccagaactgattt 7024  T
Q  103 tataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacact 202  Q
    | ||||| ||||| |||||||||||||| ||||  |||||||||  |||||||||| | |  | || ||||||||||| ||||||||| | || ||||||    
T  7023 tgtaaagctatgcccgttgcttggtcaataagaaaaggaaatattatttccttaaacaat--aaagggcgcgtacaaataggcatgaacccagacacact 6926  T
Q  203 gaaccgtgc 211  Q
    |||||||||    
T  6925 gaaccgtgc 6917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 17712 - 17490
Alignment:
Q  1 gaaaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgat 100  Q
    |||||||| |||||||| ||||||||||||||| | | | || |||    |||||||| |||||||||||  ||  |||||| |||||| || | |||||    
T  17712 gaaaagtcctaaaatgttggaacatctttaggatcattccaaccaataaaaaatatttcctaaaatataaatactactttagaaatattccatagctgat 17613  T
Q  101 tctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcaca 200  Q
    ||| ||||||||||||||||  ||||| || ||||| ||||||||| ||||||||||| | | ||| | || | |||||| | |||||||   |||||||    
T  17612 tctgtaaagatatgcgcgttagttggttaataagataaggaaatattgtttccttaaacaataaagggcgcacatacaaatatgcatgaactcaggcaca 17513  T
Q  201 ctgaaccgtgctaggatattgga 223  Q
    |||||||||| |||||| |||||    
T  17512 ctgaaccgtggtaggatgttgga 17490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 27106 - 26884
Alignment:
Q  1 gaaaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgat 100  Q
    |||||||| |||||||| ||||||||||||||| | | | || |||    |||||||| |||||||||||  ||  |||||| |||||| || | |||||    
T  27106 gaaaagtcctaaaatgttggaacatctttaggatcattccaaccaataaaaaatatttcctaaaatataaatactactttagaaatattccatagctgat 27007  T
Q  101 tctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcaca 200  Q
    ||| ||||||||||||||||  ||||| || ||||| ||||||||| ||||||||||| | | ||| | || | |||||| | |||||||   |||||||    
T  27006 tctgtaaagatatgcgcgttagttggttaataagataaggaaatattgtttccttaaacaataaagggcgcacatacaaatatgcatgaactcaggcaca 26907  T
Q  201 ctgaaccgtgctaggatattgga 223  Q
    |||||||||| |||||| |||||    
T  26906 ctgaaccgtggtaggatgttgga 26884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0453 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 109 - 223
Target Start/End: Complemental strand, 1480 - 1366
Alignment:
Q  109 gatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacactgaaccg 208  Q
    ||||||||||||||||| |||| ||| | ||||||||| ||||||||||| | | ||| ||||||||||||||||||  |||   ||||||||||||||     
T  1480 gatatgcgcgttgcttgatcaataagttaaggaaatattgtttccttaaacaataaagggtgcgcgtacaaacaggcgagaactcaggcacactgaacca 1381  T
Q  209 tgctaggatattgga 223  Q
    ||||||||| |||||    
T  1380 tgctaggatgttgga 1366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 16913 - 16707
Alignment:
Q  1 gaaaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgat 100  Q
    |||||||| |||||||| ||||||||||||||| ||| | || |||   ||||||||| |||||||||||   |  |||||| |||||| |||  |||||    
T  16913 gaaaagtcctaaaatgtcggaacatctttaggatcgttccaaccaataacaaatatttcctaaaatataaaatctactttagaaatattccaccgctgat 16814  T
Q  101 tctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcaca 200  Q
    ||| || |||||||||||||| |||||||| ||| | ||||| ||| ||||||||||| | | ||| |  ||| |||||  | ||||||||  |||||||    
T  16813 tctgtatagatatgcgcgttgtttggtcaataagttaaggaattattgtttccttaaacaataaagggcacgcttacaagtatgcatgaaatcaggcaca 16714  T
Q  201 ctgaacc 207  Q
    |||||||    
T  16713 ctgaacc 16707  T

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Target: scaffold0359 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 211
Target Start/End: Original strand, 2464 - 2672
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatata-atcacatctttaggaatattacacaactgatt 101  Q
    |||||| |||||||| ||||||||| ||||| ||| | ||||||    |||||||| |||||||||| |  ||| |||||| |||||| |||| ||||||    
T  2464 aaagtcctaaaatgtcggaacatctataggatcgttccaaacaataataaatatttcctaaaatatataataca-ctttagaaatattccacagctgatt 2562  T
Q  102 ctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacac 201  Q
    ||   ||||||||||||||||||| |||| ||| | ||||||||| ||||||||||| | | ||| | | |||||||||||| |  |||   ||||||||    
T  2563 cttagaagatatgcgcgttgcttgatcaataagttaaggaaatattgtttccttaaacaataaagggcgtgcgtacaaacagtcgagaactcaggcacac 2662  T
Q  202 tgaaccgtgc 211  Q
    ||||||||||    
T  2663 tgaaccgtgc 2672  T

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Target: scaffold0129 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 223
Target Start/End: Original strand, 16153 - 16299
Alignment:
Q  77 ctttaggaatattacacaactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgta 176  Q
    |||||| |||||| || | ||||||||   ||||||||||||||||||| |||| ||| | ||||||||| ||||||||||| | | ||| |||||||||    
T  16153 ctttagaaatattccatagctgattcttagaagatatgcgcgttgcttgatcaataagttaaggaaatattgtttccttaaacaataaagggtgcgcgta 16252  T
Q  177 caaacaggcatgaaacaaggcacactgaaccgtgctaggatattgga 223  Q
    |||||||    |||   |||||||||||||||||| ||||| |||||    
T  16253 caaacagaagagaactcaggcacactgaaccgtgccaggatgttgga 16299  T

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Target: scaffold1001 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 92 - 160
Target Start/End: Original strand, 626 - 694
Alignment:
Q  92 acaactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaata 160  Q
    ||||||||||||||| ||||||||  ||| ||||||||| ||||| |||||||||||||||||||||||    
T  626 acaactgattctatacagatatgcatgttacttggtcaataagataaggaaatatggtttccttaaata 694  T

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Target: scaffold0088 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 37166 - 37384
Alignment:
Q  5 agtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatcacatctttaggaatattacacaactgattcta 104  Q
    |||| |||||||| ||||||| | ||||| ||| | ||||||    |||||||| ||||||  ||||  ||| ||||| |||||| |||| ||||||||     
T  37166 agtcctaaaatgtcggaacatttataggatcgttccaaacaataataaatatttcctaaaaactaatatcatttttagaaatattccacagctgattctt 37265  T
Q  105 taaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacactga 204  Q
      |||||||||| |||||||| |||| ||||| ||||||||| ||||||||||| | | |||   |||| |||||| ||||  |||   |||||||||||    
T  37266 agaagatatgcgtgttgcttgatcaataagataaggaaatattgtttccttaaacaataaaggacgcgcctacaaataggcgagaacttaggcacactga 37365  T
Q  205 accgtgctaggatattgga 223  Q
    ||||||  ||||| |||||    
T  37366 accgtgtcaggatgttgga 37384  T

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Target: scaffold0037 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 185
Target Start/End: Complemental strand, 109844 - 109662
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatc-acatctttaggaatattacacaactgatt 101  Q
    |||||| ||||||||  |||||| | ||||| ||| | ||||||  | |||||||| |||||||||||   ||| |||||| |||||| ||||| |||||    
T  109844 aaagtcctaaaatgttagaacatttataggatcgttccaaacaaaattaaatatttcctaaaatataaaataca-ctttagaaatattccacaattgatt 109746  T
Q  102 ctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggc 185  Q
    ||   | ||||||||||||||||| |||| ||| | ||||||| | ||||||||||| | | ||| | ||||||||||||||||    
T  109745 cttagatgatatgcgcgttgcttgatcaataagttaaggaaatcttgtttccttaaacaataaagggcgcgcgtacaaacaggc 109662  T

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Target: scaffold0103 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 25263 - 25043
Alignment:
Q  3 aaagtcataaaatgtaggaacatctttaggaacgtacaaaacaacttcaaatattttctaaaatataatc-acatctttaggaatattacacaactgatt 101  Q
    |||||| |||||||| ||||||| | ||||| ||| | ||||||  | |||||||| |||||||||||   ||| |||||| ||||||  ||| ||||||    
T  25263 aaagtcctaaaatgtcggaacatttataggatcgttccaaacaatattaaatatttcctaaaatataaaataca-ctttagaaatattcaacagctgatt 25165  T
Q  102 ctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacac 201  Q
    ||   | |||||| ||| |||||| |||| ||| | || |||||| ||||||||||||| | ||| | ||  ||||||||||||  |||   ||||||||    
T  25164 cttagatgatatgtgcgatgcttgatcaataagttaagcaaatattgtttccttaaataataaagggcgcatgtacaaacaggcgagaacttaggcacac 25065  T
Q  202 tgaaccgtgctaggatattgga 223  Q
    |||||||||| ||||| |||||    
T  25064 tgaaccgtgccaggatgttgga 25043  T

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Target: scaffold0069 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 211
Target Start/End: Original strand, 9295 - 9456
Alignment:
Q  50 caaatattttctaaaatataatcacatctttaggaatattacacaactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggt 149  Q
    ||||||||| |||||||||||   |  |||||| |||||| |||| |||||| | || ||||||||| ||||||||| ||| ||||| ||||||||| ||    
T  9295 caaatatttcctaaaatataaaatctactttagaaatattccacagctgattttgtatagatatgcgtgttgcttggacaataagataaggaaatattgt 9394  T
Q  150 ttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacactgaaccgtgc 211  Q
    | ||||||| | | ||||| |||   ||| | | |||||||   ||||||||||||||||||    
T  9395 tcccttaaacaataaagagcgcgtacacatatatgcatgaactcaggcacactgaaccgtgc 9456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 185
Target Start/End: Original strand, 159751 - 159827
Alignment:
Q  109 gatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggc 185  Q
    ||||||||||||||||| |||| ||| | ||||||||| ||||||||||| | | ||| ||||| ||||||||||||    
T  159751 gatatgcgcgttgcttgatcaataagttaaggaaatattgtttccttaaacaataaagggtgcgtgtacaaacaggc 159827  T

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Target: scaffold0006 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 207
Target Start/End: Original strand, 88420 - 88524
Alignment:
Q  103 tataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacaggcatgaaacaaggcacact 202  Q
    |||| ||||||||||||||||||| ||| ||||| ||||| ||| ||| ||||||| | | ||||| ||||||||| | | |||||||   |||||||||    
T  88420 tatacagatatgcgcgttgcttggacaataagataaggaactattgttcccttaaacaataaagagcgcgcgtacatatatgcatgaactcaggcacact 88519  T
Q  203 gaacc 207  Q
    |||||    
T  88520 gaacc 88524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 211
Target Start/End: Complemental strand, 1872 - 1745
Alignment:
Q  84 aatattacacaactgattctataaagatatgcgcgttgcttggtcaagaagattaggaaatatggtttccttaaatattgaagagtgcgcgtacaaacag 183  Q
    |||||| |||| ||||||||   ||||||||||||||| ||| |||| ||| | ||||||||| ||||||||||| | | ||| | |||| |||||| ||    
T  1872 aatattccacagctgattcttagaagatatgcgcgttggttgatcaataagttaaggaaatattgtttccttaaacaataaagggcgcgcatacaaatag 1773  T
Q  184 gcatgaaacaaggcacactgaaccgtgc 211  Q
    ||  |||   ||||||||||||||||||    
T  1772 gcgagaactcaggcacactgaaccgtgc 1745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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