View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9686_low_27 (Length: 242)
Name: NF9686_low_27
Description: NF9686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9686_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 5 - 211
Target Start/End: Complemental strand, 42229659 - 42229453
Alignment:
| Q |
5 |
ttaggtaaaaagtacacacaatcaaattagtcacttattttagaatggatagagtattatatatcaaacgagcaacataccgtgtttgaaattggattgg |
104 |
Q |
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| T |
42229659 |
ttaggtaaaaagtacacacaatcaaattagtcacttattttagaatggatagagtattatatatcaaacgagcaacataccgtgtttgaaattggattgg |
42229560 |
T |
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| Q |
105 |
gcagaactaacaatcatagaggacatgataagtaataaaagtaatgctaaatgattaacaaatgacttcaatttggaggcattgaagataggcgccattt |
204 |
Q |
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| T |
42229559 |
gcagaactaacaatcatagaggacatgataagtaataaaagtaatgctaaatgattaacaaatgacttcaatttggaggcattgaagataggcgccattt |
42229460 |
T |
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| Q |
205 |
ctagcaa |
211 |
Q |
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||||||| |
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| T |
42229459 |
ctagcaa |
42229453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 215
Target Start/End: Complemental strand, 42215369 - 42215230
Alignment:
| Q |
76 |
gcaacataccgtgtttgaaattggattgggcagaactaac---aatcatagaggacatgataagtaataaaagtaatgctaaatgattaacaaatgactt |
172 |
Q |
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| T |
42215369 |
gcaacataccgtgtttgaaattggattgagcagcactaaccatcatcatagatgacatg---agtagtaaaagtattcctaaaagagcaaaaaacgactt |
42215273 |
T |
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| Q |
173 |
caatttggaggcattgaagataggcgccatttctagcaatatg |
215 |
Q |
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| T |
42215272 |
caatttagaggcattgaagagagtcgtcatttttaacaatatg |
42215230 |
T |
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