View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9686_low_35 (Length: 238)
Name: NF9686_low_35
Description: NF9686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9686_low_35 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 18361697 - 18361475
Alignment:
| Q |
16 |
gaattacacaaatttattgttgtatattatacacgataacaaaatatttctagagcatagttcatgagtgtatgaagtaccatcaagcactggattcgga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18361697 |
gaattacacaaatttattgttgtatattatacacgataacaaaatatttctagagcatagttcatgagtgtatgaagtaccatcaagcactggattcgga |
18361598 |
T |
|
| Q |
116 |
caggatgcgttcctgcaagcatttgtcttccaaactccatgtcatcattccaagcccattctttttctgaaatgcataagacatctcagaaaatgtcata |
215 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18361597 |
caggatgcattcctgcaagcatttgtcttccaaactccatgtcatcattccaagcccattctttttctgaaatgcataagacatctcagaaaatgtcata |
18361498 |
T |
|
| Q |
216 |
aattattttgcattaattaatag |
238 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
18361497 |
aattattttgcattaattaatag |
18361475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 3017873 - 3017650
Alignment:
| Q |
16 |
gaattacacaaatttattgttgtatattatacacgataacaaaatatttctagagcatagttcatgagtgtatgaagtaccatcaagcactggattcgga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3017873 |
gaattacacaaatttattgttgtatattatacacgataacaaaatatttctagagcatagttcatgagtgtatgaagtaccatcaagcactggattcgga |
3017774 |
T |
|
| Q |
116 |
caggatgcgttcctgcaagcatttgtcttccaaactccatgtcatcattccaagcccattctttttctgaaatgcataagacatctcagaaaatgtcat- |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
3017773 |
caggatgcgttcctgcaagcatttgtcttccaaactccatgtcatcattccaagcccattctttttctgatttgcagaagacatctcagaaaatgtcata |
3017674 |
T |
|
| Q |
215 |
aaattattttgcattaattaatag |
238 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
3017673 |
aaattattttgcattaattaatag |
3017650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University