View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9686_low_4 (Length: 433)
Name: NF9686_low_4
Description: NF9686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9686_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 697774 - 697359
Alignment:
| Q |
1 |
tgtaaccagaaatacatagggtgtaattagaaaaattcgaaaatactctcaaataagaacgtcatttctatattttcagacataattttctctttcactt |
100 |
Q |
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| T |
697774 |
tgtaaccagaaatacatagggtgtaattagaaaaattcaaaaatactctcaaataagaacgtcatttctatattttcagacataattttctctttcactt |
697675 |
T |
|
| Q |
101 |
catcaatccaacaatacacatgtctcgaaatctcttcatttgatatataccaacactctctctcactaataagcctgccaatttgattttgcagcagcct |
200 |
Q |
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| T |
697674 |
catcaatccaacaatacacatgtctcgaaatctcttcatttgatatataccaacactctctctcactaataagcctgccaattcgattttgcggcagcct |
697575 |
T |
|
| Q |
201 |
tacactttttcccttcttatttattattaagcgaatggtttgcgttggaatcatcgtcgacagcaccctcagtgccaacaacattttcttcttgtgcgta |
300 |
Q |
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| T |
697574 |
tacactttttcccttcttatttattattaagctaatggtttgcgttggaatcatcgacgacagcaccctcagtgccaacaacattttcttcttgtgcgca |
697475 |
T |
|
| Q |
301 |
ggggaacacaagagggttgttgaactgttgaatttctctaacgagtttatcgacagaggctttgatagacatatcgtgtaaggaaaggcagacaatggaa |
400 |
Q |
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|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
697474 |
ggggaacacaggagggttgtcgaactgttgaatttctctaacgagtttatcgacagaggctttgatagacatatcgtgcaatgaaaggcagacaatggaa |
697375 |
T |
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| Q |
401 |
gcacattggcgcctct |
416 |
Q |
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| T |
697374 |
gcacattggcgcctct |
697359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 270
Target Start/End: Complemental strand, 699684 - 699597
Alignment:
| Q |
183 |
ttgattttgcagcagccttacactttttcccttcttatttattattaagcgaatggtttgcgttggaatcatcgtcgacagcaccctc |
270 |
Q |
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|||||||||||||||||||| |||| ||||||| || || ||||||| |||| | || || ||||||||||||||| ||||||||| |
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| T |
699684 |
ttgattttgcagcagccttagacttcttccctttgtacttgttattaaccgaaggtttggcattggaatcatcgtcggaagcaccctc |
699597 |
T |
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