View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9686_low_40 (Length: 216)
Name: NF9686_low_40
Description: NF9686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9686_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 9 - 201
Target Start/End: Complemental strand, 32566549 - 32566356
Alignment:
| Q |
9 |
ggtagata-attctggtaaatttaaggagcttttgggcaaacatgagggtactatatacagcgactttcttattgcaacacaattatttgcaactcttaa |
107 |
Q |
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| T |
32566549 |
ggtagatacattctgatacatttaaggagcttttgagcaaacatgaggggactatatacagcgactttcttattgcaacacaattatttgcaactcttaa |
32566450 |
T |
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| Q |
108 |
acaacataacatctttgcaactactaaaaagggagaaaatctaacaatgaagtggagaaaatatatataaataatcaatcattattgagatttt |
201 |
Q |
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| T |
32566449 |
acaacataacatctttgcaactactaaaaagggtgaaaatctaacaatgaagtggagaaaatctatataaataatcaatcattatcgagatttt |
32566356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 32648017 - 32648070
Alignment:
| Q |
148 |
ctaacaatgaagtggagaaaatatatataaataatcaatcattattgagatttt |
201 |
Q |
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| T |
32648017 |
ctaacaatgaagtggagaaaatctatataaacaatcaatcattattgagatttt |
32648070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 32647872 - 32647940
Alignment:
| Q |
24 |
taaatttaaggagcttttgggcaaacatgagggtactatatacagcgactttcttattgcaacacaatt |
92 |
Q |
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| T |
32647872 |
taaatttaagaagctttttagtaaacatgatggaactatatacagtgactttcttattgcaacacaatt |
32647940 |
T |
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