View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9686_low_7 (Length: 358)
Name: NF9686_low_7
Description: NF9686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9686_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 8378647 - 8378970
Alignment:
| Q |
18 |
atcaaatccatgatgtgcttcacacttgtcacaaaacgctgagtacaaatggtatgagcttagtggtacctgttggggcaagaaaacatggcacaatgga |
117 |
Q |
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| T |
8378647 |
atcaaatccatgatgtgcttcacacttgtcgccaaacgctg-----------tatgagcttagtggtacctgtaggtgcaagaaaacatgacacaattga |
8378735 |
T |
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| Q |
118 |
tatgagttttcagtgaaagaaaatattatagatgctaaaagtaacacactatgtaataaaattcattccttaaaatcttactgtgatgctgcttttatgc |
217 |
Q |
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| T |
8378736 |
tatgagttttcagtgaaagaaaatattatagatgctaaaagtgacacactatgtaataaaattcataccttaaaatcttactgtgatgctgcttttatgc |
8378835 |
T |
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| Q |
218 |
tttcactttgcgtacaataacatgagcacccttttctggctgaatagtcatcactaaatttggagtatgagcataggttggagaaagttcaaaatagaaa |
317 |
Q |
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| T |
8378836 |
tttcactttgcgtagaataacatgagcacccttttctggctgaatagtcatcactaaatttggagtatgagcataggttggagaaagttcaaaatagaaa |
8378935 |
T |
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| Q |
318 |
ttttgtaaaatcattgacactgccatctctgcttc |
352 |
Q |
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| T |
8378936 |
ttttgtaaaatcattgacactgccatctttgcttc |
8378970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 201 - 352
Target Start/End: Complemental strand, 23768907 - 23768756
Alignment:
| Q |
201 |
tgatgctgcttttatgctttcactttgcgtacaataacatgagcacccttttctggctgaatagtcatcactaaatttggagtatgagcataggttggag |
300 |
Q |
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| T |
23768907 |
tgatgttgtttttatgttttgattttgcgtagaataacatgagcaccatgttgtggctgaacagtaagcaccacagatggagcatgagcatatgtttgag |
23768808 |
T |
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| Q |
301 |
aaagttcaaaatagaaattttgtaaaatcattgacactgccatctctgcttc |
352 |
Q |
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| T |
23768807 |
aaagttcaaatgaaaaattctgtaaaatcaatgccattgccatctttgcttc |
23768756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 352
Target Start/End: Complemental strand, 30396030 - 30395888
Alignment:
| Q |
210 |
ttttatgctttcactttgcgtacaataacatgagcacccttttctggctgaatagtcatcactaaatttggagtatgagcataggttggagaaagttcaa |
309 |
Q |
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| T |
30396030 |
ttttatgtttccactttgcgtataataatatgagcaccatattgtggctgaagagtaatcacagttgatggagcatgagcataggttgaggaaagttcaa |
30395931 |
T |
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| Q |
310 |
aatagaaattttgtaaaatcattgacactgccatctctgcttc |
352 |
Q |
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| T |
30395930 |
atgaaaaatgttgcaaaatcattgacaatgccatctttgcttc |
30395888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 277 - 352
Target Start/End: Complemental strand, 30476736 - 30476661
Alignment:
| Q |
277 |
ttggagtatgagcataggttggagaaagttcaaaatagaaattttgtaaaatcattgacactgccatctctgcttc |
352 |
Q |
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| T |
30476736 |
ttggagcatgagcataagatggagaaagttcaaatgagaatttttttaaaatcattgccattgccatctttgcttc |
30476661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 352
Target Start/End: Complemental strand, 30484913 - 30484839
Alignment:
| Q |
278 |
tggagtatgagcataggttggagaaagttcaaaatagaaattttgtaaaatcattgacactgccatctctgcttc |
352 |
Q |
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| T |
30484913 |
tggagcatgagcataggttggagaaagttcaaatgagaaatgctgcaaaatcaatgttattgccatctttgcttc |
30484839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 352
Target Start/End: Complemental strand, 30431522 - 30431454
Alignment:
| Q |
284 |
atgagcataggttggagaaagttcaaaatagaaattttgtaaaatcattgacactgccatctctgcttc |
352 |
Q |
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| T |
30431522 |
atgagcataagatggagaaagttcaaatgagaaacgttgtaaaatcattgctattgccatctttgcttc |
30431454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 352
Target Start/End: Original strand, 41626745 - 41626819
Alignment:
| Q |
278 |
tggagtatgagcataggttggagaaagttcaaaatagaaattttgtaaaatcattgacactgccatctctgcttc |
352 |
Q |
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| T |
41626745 |
tggagcatgagcataggctggagaaagttgaaatgagaaatgctgtaaaatcaatgtcattgccatctttgcttc |
41626819 |
T |
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