View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9686_low_9 (Length: 344)
Name: NF9686_low_9
Description: NF9686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9686_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 6 - 321
Target Start/End: Original strand, 10310801 - 10311116
Alignment:
| Q |
6 |
atggacatcctgcgatcaaaggagagtgtgaaaattaaactgaacgaaacttttaacaaaagagtaccgtggtagacattggccttataggctacttcac |
105 |
Q |
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| T |
10310801 |
atggacatcctgcgatcaaaggagaatgtgaaaattaaactgaacgaaacttttaacaaaagagtaccgtggtagacattggccttataggctacttcac |
10310900 |
T |
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| Q |
106 |
cacgttcataagatgtcttgaaaaatatgaatgccgttgaatctgcttccttaccatcaccattgtgtacaaacatgtaagcgatgatagagtgcgaata |
205 |
Q |
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| T |
10310901 |
cacattcataagatgtcttgaaaaatatgaatgcccttgaatctgcttccttaccatcaccattgtgtacaaacatgtaagagatgatagagtacgaata |
10311000 |
T |
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| Q |
206 |
agcaaaacaacgagacctcctccctcaaccgtctctattgtccgtgcttggagattaggcgttaacgcctcgaaatccttaaagaaaaaaacagttacaa |
305 |
Q |
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| T |
10311001 |
agcaaaacaacgagacctcctccctcaaccgtctctattgttcgtgctaggagattaggcgttaacgcctcgaaatccttaaagaaaaaaacagttacaa |
10311100 |
T |
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| Q |
306 |
aatcggttcatcttgg |
321 |
Q |
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| T |
10311101 |
aattggttcatcttgg |
10311116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 143 - 284
Target Start/End: Original strand, 38435341 - 38435482
Alignment:
| Q |
143 |
tgaatctgcttccttaccatcaccattgtgtacaaacatgtaagcgatgatagagtgcgaataagcaaaacaacgagacctcctccctcaaccgtctcta |
242 |
Q |
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| T |
38435341 |
tgaatcttcttacgtaccatcaccatcgtgtacaaactggttagcgaagatagagagcgcaaaagcaaaacaatcaaccctcctccttccactgtctcta |
38435440 |
T |
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| Q |
243 |
ttgtccgtgcttggagattaggcgttaacgcctcgaaatcct |
284 |
Q |
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| T |
38435441 |
tagttcttgctagtagattaggtgttaacgcctcaaaatcct |
38435482 |
T |
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