View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9687_high_1 (Length: 530)

Name: NF9687_high_1
Description: NF9687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9687_high_1
NF9687_high_1
[»] chr3 (23 HSPs)
chr3 (21-519)||(4170915-4171411)
chr3 (241-469)||(50518721-50518947)
chr3 (238-488)||(25647888-25648135)
chr3 (242-519)||(37123551-37123818)
chr3 (241-360)||(14893260-14893379)
chr3 (280-471)||(14194152-14194340)
chr3 (241-470)||(33143584-33143813)
chr3 (241-356)||(32010121-32010236)
chr3 (242-384)||(48892986-48893128)
chr3 (248-384)||(14280188-14280323)
chr3 (238-385)||(41039462-41039609)
chr3 (241-356)||(46358014-46358129)
chr3 (238-359)||(28937357-28937472)
chr3 (243-357)||(25594142-25594256)
chr3 (239-357)||(823027-823144)
chr3 (241-356)||(37998841-37998956)
chr3 (272-351)||(1652539-1652617)
chr3 (262-351)||(7105183-7105275)
chr3 (272-342)||(47946049-47946118)
chr3 (272-336)||(14754946-14755010)
chr3 (370-422)||(46358167-46358219)
chr3 (272-350)||(30935040-30935117)
chr3 (399-469)||(28937502-28937574)
[»] chr2 (28 HSPs)
chr2 (238-519)||(7696133-7696413)
chr2 (272-501)||(13337449-13337668)
chr2 (266-445)||(4974990-4975169)
chr2 (266-445)||(4992898-4993077)
chr2 (238-346)||(33788255-33788362)
chr2 (248-448)||(34230445-34230642)
chr2 (253-356)||(10173223-10173326)
chr2 (241-359)||(41086436-41086554)
chr2 (238-518)||(12342992-12343257)
chr2 (272-422)||(37770316-37770461)
chr2 (236-347)||(22884741-22884852)
chr2 (241-346)||(42802427-42802535)
chr2 (241-359)||(33533376-33533500)
chr2 (272-357)||(41113403-41113488)
chr2 (241-370)||(29997265-29997394)
chr2 (238-350)||(25504518-25504629)
chr2 (248-359)||(29139591-29139700)
chr2 (238-357)||(4472276-4472395)
chr2 (248-326)||(10772889-10772967)
chr2 (241-336)||(15361078-15361172)
chr2 (241-344)||(29487447-29487548)
chr2 (241-351)||(1269791-1269900)
chr2 (266-347)||(27740331-27740412)
chr2 (257-318)||(31115185-31115246)
chr2 (262-314)||(37559832-37559884)
chr2 (241-356)||(20572407-20572521)
chr2 (302-337)||(40360652-40360687)
chr2 (297-350)||(44594018-44594071)
[»] chr5 (26 HSPs)
chr5 (238-468)||(8297694-8297922)
chr5 (241-469)||(26405180-26405406)
chr5 (238-359)||(25992332-25992453)
chr5 (242-519)||(26045596-26045874)
chr5 (238-422)||(7194930-7195113)
chr5 (265-472)||(7682770-7682978)
chr5 (266-357)||(13953903-13953996)
chr5 (237-422)||(30097601-30097786)
chr5 (241-450)||(10174921-10175128)
chr5 (238-447)||(33109831-33110035)
chr5 (241-519)||(14302076-14302355)
chr5 (248-356)||(5187276-5187384)
chr5 (238-350)||(8731278-8731389)
chr5 (238-361)||(33258518-33258641)
chr5 (256-342)||(27713421-27713507)
chr5 (262-350)||(31742504-31742592)
chr5 (272-376)||(7391660-7391766)
chr5 (263-314)||(21391932-21391983)
chr5 (266-344)||(23426646-23426724)
chr5 (272-357)||(4941305-4941390)
chr5 (266-348)||(24071918-24072000)
chr5 (319-384)||(37108105-37108170)
chr5 (275-311)||(24401099-24401135)
chr5 (262-357)||(25657773-25657867)
chr5 (287-357)||(4914177-4914247)
chr5 (308-337)||(34345831-34345860)
[»] chr4 (26 HSPs)
chr4 (238-519)||(38636863-38637143)
chr4 (241-520)||(41117600-41117878)
chr4 (235-352)||(42719494-42719611)
chr4 (252-519)||(16832663-16832931)
chr4 (238-326)||(9262807-9262895)
chr4 (371-519)||(49528243-49528390)
chr4 (266-357)||(28967208-28967299)
chr4 (239-519)||(19814847-19815130)
chr4 (262-472)||(22810826-22811023)
chr4 (265-351)||(48098645-48098731)
chr4 (238-336)||(52009179-52009277)
chr4 (241-357)||(2061464-2061580)
chr4 (240-359)||(25754206-25754325)
chr4 (241-433)||(49747785-49747977)
chr4 (364-519)||(25753343-25753499)
chr4 (248-346)||(35947946-35948044)
chr4 (240-344)||(20632128-20632233)
chr4 (276-349)||(46487621-46487694)
chr4 (412-519)||(19673271-19673377)
chr4 (302-350)||(43077307-43077355)
chr4 (238-336)||(21983504-21983601)
chr4 (299-357)||(39420726-39420784)
chr4 (263-340)||(16502053-16502123)
chr4 (278-358)||(38930120-38930200)
chr4 (238-346)||(12296518-12296625)
chr4 (302-346)||(35336914-35336958)
[»] chr7 (22 HSPs)
chr7 (242-385)||(42532892-42533035)
chr7 (267-519)||(24324456-24324707)
chr7 (242-471)||(33719183-33719413)
chr7 (241-336)||(6726051-6726146)
chr7 (272-404)||(16828763-16828894)
chr7 (241-472)||(1321011-1321241)
chr7 (238-345)||(28534134-28534240)
chr7 (241-352)||(44755906-44756016)
chr7 (238-356)||(3478683-3478800)
chr7 (241-357)||(6716368-6716484)
chr7 (248-351)||(8745469-8745571)
chr7 (242-336)||(48058306-48058399)
chr7 (272-384)||(16954795-16954906)
chr7 (239-351)||(36674809-36674921)
chr7 (241-336)||(47456706-47456800)
chr7 (289-374)||(39013558-39013643)
chr7 (298-335)||(22567781-22567818)
chr7 (455-519)||(8745324-8745388)
chr7 (300-347)||(13312180-13312227)
chr7 (241-357)||(25438690-25438807)
chr7 (256-332)||(9427725-9427801)
chr7 (266-350)||(38485906-38485989)
[»] scaffold0050 (1 HSPs)
scaffold0050 (248-472)||(36926-37149)
[»] chr1 (30 HSPs)
chr1 (238-384)||(27102489-27102634)
chr1 (241-359)||(9312972-9313090)
chr1 (265-433)||(34775129-34775297)
chr1 (240-429)||(46768437-46768627)
chr1 (241-507)||(11439652-11439919)
chr1 (241-470)||(31290653-31290880)
chr1 (238-359)||(4431006-4431127)
chr1 (238-472)||(32882583-32882815)
chr1 (253-509)||(10785105-10785359)
chr1 (238-352)||(376436-376549)
chr1 (253-384)||(52278589-52278717)
chr1 (238-315)||(7451890-7451967)
chr1 (241-356)||(9557241-9557357)
chr1 (248-356)||(27905766-27905873)
chr1 (267-347)||(37200485-37200565)
chr1 (288-350)||(32863225-32863287)
chr1 (256-345)||(17033939-17034028)
chr1 (265-348)||(41126107-41126190)
chr1 (272-356)||(38544379-38544463)
chr1 (262-346)||(46603705-46603789)
chr1 (238-357)||(49820488-49820608)
chr1 (238-350)||(50588906-50589014)
chr1 (311-372)||(16149093-16149155)
chr1 (238-350)||(19598990-19599101)
chr1 (265-336)||(26602479-26602550)
chr1 (301-348)||(42374526-42374573)
chr1 (267-357)||(38546841-38546931)
chr1 (390-468)||(16577480-16577560)
chr1 (318-350)||(4652128-4652160)
chr1 (300-348)||(18844971-18845019)
[»] chr8 (10 HSPs)
chr8 (238-448)||(17656365-17656575)
chr8 (290-519)||(10248246-10248477)
chr8 (242-356)||(12197708-12197822)
chr8 (242-356)||(12442136-12442250)
chr8 (238-330)||(8843743-8843833)
chr8 (241-357)||(8862256-8862370)
chr8 (241-336)||(25184754-25184848)
chr8 (318-357)||(2273760-2273799)
chr8 (297-347)||(9831691-9831741)
chr8 (266-334)||(43312312-43312378)
[»] chr6 (9 HSPs)
chr6 (241-356)||(20701430-20701544)
chr6 (241-359)||(3880244-3880362)
chr6 (242-422)||(15120235-15120415)
chr6 (239-384)||(6860338-6860484)
chr6 (240-348)||(17278093-17278201)
chr6 (263-334)||(13423718-13423789)
chr6 (302-342)||(26534424-26534464)
chr6 (419-519)||(3880405-3880508)
chr6 (242-350)||(9224273-9224380)
[»] scaffold0063 (1 HSPs)
scaffold0063 (262-519)||(58298-58556)
[»] scaffold0119 (1 HSPs)
scaffold0119 (241-351)||(41802-41911)
[»] scaffold1613 (1 HSPs)
scaffold1613 (272-356)||(658-742)
[»] scaffold1384 (1 HSPs)
scaffold1384 (305-448)||(1347-1494)
[»] scaffold1252 (1 HSPs)
scaffold1252 (277-335)||(816-874)
[»] scaffold0499 (1 HSPs)
scaffold0499 (272-336)||(6906-6970)


Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 21 - 519
Target Start/End: Complemental strand, 4171411 - 4170915
Alignment:
Q  21 agctagtattacatgtaaacaaattagaggcacgagacaaaggtcttggtggcctgccccttctacggagattagattgaattggtcactcagatctata 120  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4171411 agctagtattacatgtaaacaaattagaggcactagacaaaggtcttggtggcctaccccttctacggagattagattgaattggtcactcagatctata 4171312  T
Q  121 cggctaaattaaggatttgattccttaacttacttttgctttttaatctggtccataattaattgtttatgtttaagtcctttaatgtcttttttattag 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4171311 cggctaaattaaggatttgattccttaacttacttttgctttttaatctggtccataattaattgtttatgtttaagtcctttaatgtcttttttattag 4171212  T
Q  221 nnnnnnnnnnnnnnaagcagcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgt 320  Q
                  ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4171211 tttttttttttt--aagcaacaaattctattaaacaactaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgt 4171114  T
Q  321 atataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaa 420  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||| ||||||||||||||||||||||    
T  4171113 atataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaaatatacgtcatcacctaaaatagactccttcacgaa 4171014  T
Q  421 aatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaa 519  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4171013 aatgaccattgtataaatgatatccaaccatccatcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcagtccttaacaccaaa 4170915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 241 - 469
Target Start/End: Original strand, 50518721 - 50518947
Alignment:
Q  241 caaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaa 340  Q
    |||||| ||||||||||    ||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  50518721 caaattttattaaacaatttgatccctgctcaagacgaacagagactggtgaaactgagaatacaaacaaaaggtgtcgtatataggcggaacacccgaa 50518820  T
Q  341 aataaacaccctaaaaacatcattgaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatga 440  Q
    ||||||||||||||||||| |  ||||||| ||||||| | ||||||| | ||| ||||||||| ||||||||||||| | |  ||||||||| ||| ||    
T  50518821 aataaacaccctaaaaacacccatgaggaccacaccca-acaaaatacacctcaccatctaaaacagactccttcacg-ataccaccactgtaaaaacga 50518918  T
Q  441 tatccaaccatctatcgtcactactcacc 469  Q
    |||| ||| ||| ||||||||||||||||    
T  50518919 tatctaacgatccatcgtcactactcacc 50518947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 238 - 488
Target Start/End: Complemental strand, 25648135 - 25647888
Alignment:
Q  238 cagcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacct 337  Q
    |||||||||  ||||||||||| |||||||| | |||||||||||||| |||||||||| |||||||||||||||||||  |||||||| |||||||||     
T  25648135 cagcaaatttaattaaacaacctaatccctgttcaagacgaacagagatcggtgaaactaagaatacaaacaaaaggcgcagtatatagacggaacaccc 25648036  T
Q  338 gaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaa 437  Q
    ||||||||||||||||||||||    ||||||| |||||||| ||| | ||   ||| ||  ||||| | ||||| ||||| |||  ||||||| | |||    
T  25648035 gaaaataaacaccctaaaaacacacatgaggaccacacccaccaaata-acatgtcaccacataaaacatactccatcacg-aaaccaccactg-aaaaa 25647939  T
Q  438 tgatatccaaccatctatcgtcactactcacccccttctaaaaacacccct 488  Q
     |||||||||||||| ||| |||||||||||||||   |||||||||||||    
T  25647938 cgatatccaaccatccatcatcactactcacccccaaataaaaacacccct 25647888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 242 - 519
Target Start/End: Complemental strand, 37123818 - 37123551
Alignment:
Q  242 aaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaa 341  Q
    ||||| ||||||||||  ||||| ||||| ||||||||| ||||||| ||||||||||||||||||||||||||||| || |||| ||||||||| ||||    
T  37123818 aaattttattaaacaattaaatctctgctcaagacgaactgagaccgatgaaactgagaatacaaacaaaaggcgtcctacatagtcggaacacccgaaa 37123719  T
Q  342 ataaacaccctaaaaacatcattgaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgat 441  Q
    ||||||||||           |||| ||||||||||||  ||||||| ||||| ||| ||||||||||| ||||||||||| |||||||||| ||| |||    
T  37123718 ataaacaccc-----------ttgaagacaacacccac-caaaatacacatcaccatataaaatagacttcttcacgaaaacgaccactgtaaaaacgat 37123631  T
Q  442 atcca--accatctatcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaa 519  Q
    |||||  |||| || | ||||||||||||| ||    |  |||||||||| || | ||||||||||||| ||||| ||||    
T  37123630 atccaacaccacctgttgtcactactcaccgccaaagatgaacacccctccaaattaaactctcagtccagaacatcaaa 37123551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 241 - 360
Target Start/End: Complemental strand, 14893379 - 14893260
Alignment:
Q  241 caaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaa 340  Q
    |||||| ||||||||||||| ||  ||||| |||| |||||||||| |||||||| |||| |||||||||||| || |||||||||||||||||||||||    
T  14893379 caaattttattaaacaaccagataactgctcaagatgaacagagactggtgaaaccgagagtacaaacaaaagacgccgtatataggcggaacacctgaa 14893280  T
Q  341 aataaacaccctaaaaacat 360  Q
    ||||||||||||||||||||    
T  14893279 aataaacaccctaaaaacat 14893260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 280 - 471
Target Start/End: Complemental strand, 14194340 - 14194152
Alignment:
Q  280 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaaca-tcattgaggacaacaccca 378  Q
    |||||||| ||||||||||||| |||||||||||| | | ||||||||||||||| | ||||||||||| |||||||||| ||| ||||||| |||||||    
T  14194340 cagagaccagtgaaactgagaacacaaacaaaaggtgccttatataggcggaacatccgaaaataaacatcctaaaaacactca-tgaggaccacaccca 14194242  T
Q  379 caaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccc 471  Q
    |  ||||||| | ||| || |||||| ||||||| ||||| ||||  |||||| || || |||||||||||||| ||||||||||||||||||    
T  14194241 c-caaaatacacgtcaccacctaaaacagactccatcacg-aaatcgccactgaat-aacgatatccaaccatccatcgtcactactcacccc 14194152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 241 - 470
Target Start/End: Original strand, 33143584 - 33143813
Alignment:
Q  241 caaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaa 340  Q
    |||||| ||||||||||||| ||| ||||| ||| |||||| | | |||||||||||||||||||| ||||||||||| ||||||||||||||||| |||    
T  33143584 caaattttattaaacaaccagatctctgctcaaggcgaacataaatcggtgaaactgagaatacaaccaaaaggcgtcatatataggcggaacacccgaa 33143683  T
Q  341 aataaacaccctaaaaacatcattgaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatga 440  Q
    || |||||||| ||||||  |   ||||| |||| |||| | ||| || | ||| || |||||| | |||||||||||||||  ||||||| | ||| ||    
T  33143684 aa-aaacacccaaaaaactcccaagaggataacatccaccataaa-acacgtcaccacctaaaacaaactccttcacgaaaaccaccactgaacaaacga 33143781  T
Q  441 tatccaa--ccatctatcgtcactactcaccc 470  Q
    |||||||  |||||  ||||||||||||||||    
T  33143782 tatccaaccccatccgtcgtcactactcaccc 33143813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 241 - 356
Target Start/End: Complemental strand, 32010236 - 32010121
Alignment:
Q  241 caaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaa 340  Q
    |||||| |||| |||||||| |||||| || |||||||||||||| ||||||  | |||||||||| | ||| ||||||||||||||||||| |||||||    
T  32010236 caaattttatttaacaaccagatccctactcaagacgaacagagatcggtgattcagagaatacaacctaaaagcgtcgtatataggcggaatacctgaa 32010137  T
Q  341 aataaacaccctaaaa 356  Q
    |||||||||| |||||    
T  32010136 aataaacaccttaaaa 32010121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 242 - 384
Target Start/End: Original strand, 48892986 - 48893128
Alignment:
Q  242 aaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaa 341  Q
    ||||| ||||||||||| | ||||||||| |||||||||| |||| | |||||||||||||||||||||| |  | |||||||| | |||||| | ||||    
T  48892986 aaattttattaaacaactagatccctgctcaagacgaacaaagacagatgaaactgagaatacaaacaaacgatgccgtatataagaggaacatccgaaa 48893085  T
Q  342 ataaacaccctaaaaacatcattgaggacaacacccacaaaaa 384  Q
    ||||||||  |||||||| |  ||| |||||||||||| ||||    
T  48893086 ataaacactttaaaaacacccctgaagacaacacccaccaaaa 48893128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 248 - 384
Target Start/End: Original strand, 14280188 - 14280323
Alignment:
Q  248 tattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaac 347  Q
    |||||||||| || |||  |||| |||||||||| ||| || ||||||||| ||||||||  ||||||| ||||||||||||||||||| |||| |||||    
T  14280188 tattaaacaatcagatctttgctcaagacgaacaaagatcgatgaaactgataatacaaattaaaggcgccgtatataggcggaacacccgaaagtaaac 14280287  T
Q  348 accctaaaaacatcattgaggacaacacccacaaaaa 384  Q
    || || |||| |||  |||||||||||||||| ||||    
T  14280288 actctgaaaatatc-ctgaggacaacacccactaaaa 14280323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 238 - 385
Target Start/End: Complemental strand, 41039609 - 41039462
Alignment:
Q  238 cagcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacct 337  Q
    ||||||||| ||| ||||||  | |||||| || || ||||| ||||| | |||||||  || ||||||| |||| || || |||||||||||||||||     
T  41039609 cagcaaattttatgaaacaaatagatccctacttaaaacgaatagagatcagtgaaaccaagcatacaaagaaaatgcatcatatataggcggaacacca 41039510  T
Q  338 gaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaaa 385  Q
    |||||||||||||||||||||| |  ||| |||||||||||| |||||    
T  41039509 gaaaataaacaccctaaaaacacccgtgaagacaacacccaccaaaaa 41039462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 241 - 356
Target Start/End: Original strand, 46358014 - 46358129
Alignment:
Q  241 caaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaa 340  Q
    |||||| |||| |||||||| ||||||||| |||||||||||||||| | ||  | || ||||||||| |||| ||  ||||||||||| ||||||||||    
T  46358014 caaattttatttaacaaccagatccctgctcaagacgaacagagaccagagattcagaaaatacaaactaaagacgctgtatataggcgaaacacctgaa 46358113  T
Q  341 aataaacaccctaaaa 356  Q
    |||||||||| |||||    
T  46358114 aataaacaccttaaaa 46358129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 238 - 359
Target Start/End: Original strand, 28937357 - 28937472
Alignment:
Q  238 cagcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacct 337  Q
    ||||||||  ||||||| ||||| ||| ||| | |||||||| |||||||||||||| ||||||||||||      ||| |||||||| ||||||||||     
T  28937357 cagcaaatattattaaataaccagatctctgttcaagacgaagagagaccggtgaaattgagaatacaaa------gcgccgtatataagcggaacaccc 28937450  T
Q  338 gaaaataaacaccctaaaaaca 359  Q
    ||||||||||||||||||||||    
T  28937451 gaaaataaacaccctaaaaaca 28937472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 243 - 357
Target Start/End: Original strand, 25594142 - 25594256
Alignment:
Q  243 aattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaa 342  Q
    |||| |||| || ||||| ||| ||||| ||||| |||||||| ||||||  | ||||||| ||| |||| ||||||||||||||||||||||| ||||     
T  25594142 aattttatttaaaaaccagatcactgctcaagacaaacagagatcggtgattcagagaataaaaataaaatgcgtcgtatataggcggaacacccgaaag 25594241  T
Q  343 taaacaccctaaaaa 357  Q
    |||||||| ||||||    
T  25594242 taaacaccataaaaa 25594256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 239 - 357
Target Start/End: Original strand, 823027 - 823144
Alignment:
Q  239 agcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctg 338  Q
    |||||||| ||||||| ||||| ||| ||||| |||||||||||||||||||||  | |||| |||||   |||||||||||||||| | ||||||||      
T  823027 agcaaattttattaaaaaaccagatcgctgctcaagacgaacagagaccggtgattcagagactacaagttaaaggcgtcgtatataaggggaacacc-c 823125  T
Q  339 aaaataaacaccctaaaaa 357  Q
    ||| |||||||| ||||||    
T  823126 aaattaaacaccataaaaa 823144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 356
Target Start/End: Original strand, 37998841 - 37998956
Alignment:
Q  241 caaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaa 340  Q
    |||||| ||||||||||| |||||  || | |||||||| | ||| | | |||||||||||||||||||||| | | |||||||||||||||   | |||    
T  37998841 caaattttattaaacaactaaatcattgttcaagacgaataaagatcagcgaaactgagaatacaaacaaaatgtgccgtatataggcggaatgtccgaa 37998940  T
Q  341 aataaacaccctaaaa 356  Q
    |||||||||| |||||    
T  37998941 aataaacaccttaaaa 37998956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 272 - 351
Target Start/End: Original strand, 1652539 - 1652617
Alignment:
Q  272 aagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccc 351  Q
    ||||| ||||||||||| ||  || || | ||||||| ||||||||||||||||||||||||||| | ||||||||||||    
T  1652539 aagacaaacagagaccgatgtcacagaaagtacaaactaaaggcgtcgtatataggcggaacacccg-aaataaacaccc 1652617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 351
Target Start/End: Complemental strand, 7105275 - 7105183
Alignment:
Q  262 atccctgctaaagacgaacagagaccg---gtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccc 351  Q
    ||||||||| |||||||||||||||||   ||||||| |||| ||||||| |||| |  | |||| ||||||||||||  |||||||||||||    
T  7105275 atccctgctcaagacgaacagagaccgccggtgaaacagagattacaaactaaagacaccttataaaggcggaacacccaaaaataaacaccc 7105183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 342
Target Start/End: Complemental strand, 47946118 - 47946049
Alignment:
Q  272 aagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaa 342  Q
    |||||||| |||||  ||| ||||  ||||||||||| || ||||||||||||||||||||||||||||||    
T  47946118 aagacgaatagagattggtaaaacatagaatacaaacgaa-ggcgtcgtatataggcggaacacctgaaaa 47946049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 272 - 336
Target Start/End: Original strand, 14754946 - 14755010
Alignment:
Q  272 aagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacc 336  Q
    |||||||||| | | | |||||| ||||||||||||| ||||||| |||| ||||||||||||||    
T  14754946 aagacgaacaaatatcagtgaaattgagaatacaaactaaaggcgccgtacataggcggaacacc 14755010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 422
Target Start/End: Original strand, 46358167 - 46358219
Alignment:
Q  370 caacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaa 422  Q
    ||||||||||||| ||||  |||||||| |||||| |||||||||||||||||    
T  46358167 caacacccacaaagaataaacatcatcacctaaaacagactccttcacgaaaa 46358219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 350
Target Start/End: Original strand, 30935040 - 30935117
Alignment:
Q  272 aagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacacc 350  Q
    |||||||||||||||||||   ||||| |||||||||  |||| |||||||||| ||| |||||| ||||| |||||||    
T  30935040 aagacgaacagagaccggtcttactgaaaatacaaac-taaggtgtcgtatataagcgaaacacccgaaaacaaacacc 30935117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 469
Target Start/End: Original strand, 28937502 - 28937574
Alignment:
Q  399 ctaaaatagactccttcacgaaaatgaccactgtataaatgatatcca--accatctatcgtcactactcacc 469  Q
    |||||| |||| ||||||||||| ||||||||||| ||| ||||||||  |||| | |||| |||||||||||    
T  28937502 ctaaaacagaccccttcacgaaagtgaccactgtaaaaacgatatccaataccacccatcgccactactcacc 28937574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 4e-67; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 238 - 519
Target Start/End: Complemental strand, 7696413 - 7696133
Alignment:
Q  238 cagcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacct 337  Q
    ||||||||| |||| |||||||||||||||||| |||| |||||||||||| ||||| |||||||||||||||||||   |||||||||||||||||||     
T  7696413 cagcaaattttattgaacaaccaaatccctgctcaagatgaacagagaccgatgaaattgagaatacaaacaaaaggaaccgtatataggcggaacaccc 7696314  T
Q  338 gaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaa 437  Q
     |||||||||||| |||||||| |   |||||||||||||||  ||||||| ||||| || |||||||| ||||||||||||||| ||||| |||| |||    
T  7696313 aaaaataaacaccttaaaaacacccccgaggacaacacccac-caaaatacacatcaccacctaaaataaactccttcacgaaaacgaccaatgtaaaaa 7696215  T
Q  438 tgatatccaaccatctatcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaa 519  Q
    |||||| ||||||   ||||||||||||||| |||||  |||||||||||| ||| ||||||||   |||||||||||||||    
T  7696214 tgatattcaaccactcatcgtcactactcactcccttagaaaaacacccctaaaaataaaactcctggtcctgaacaccaaa 7696133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 272 - 501
Target Start/End: Complemental strand, 13337668 - 13337449
Alignment:
Q  272 aagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggaca 371  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |  ||||||||    
T  13337668 aagacgaacagagaccggtgaaacagagaatacaaacaaaaggcgtcgtatataggtggaacacctgaaaataaacaccctaaaaacacccctgaggaca 13337569  T
Q  372 acacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccc 471  Q
    ||||||||   || ||| ||||  || |      ||||||| ||||||||| |||||| ||| ||| ||||||| | || | ||||||||||||||||||    
T  13337568 acacccac-ttaattacacatcgccacc------agactccctcacgaaaa-gaccacggta-aaacgatatcc-atcacccatcgtcactactcacccc 13337479  T
Q  472 cttctaaaaacacccctcaaagtaaaactc 501  Q
    |||  |||||||||||||||| ||||||||    
T  13337478 cttagaaaaacacccctcaaaataaaactc 13337449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 266 - 445
Target Start/End: Complemental strand, 4975169 - 4974990
Alignment:
Q  266 ctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccct-aaaaacatcatt 364  Q
    ||||| |||||||||||||||  |||||||| ||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||| ||||||||| ||    
T  4975169 ctgctcaagacgaacagagactagtgaaactaagaatacaaactaaaggcgtcgtatataggctgaacacccgaaaataaacaccctgaaaaacatcctt 4975070  T
Q  365 gaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatcc 445  Q
    ||||| |||||||||  ||| ||| || || || |||||| ||||| ||||||||||| |||||||||| ||| |||||||    
T  4975069 gaggataacacccac-caaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcc 4974990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 266 - 445
Target Start/End: Complemental strand, 4993077 - 4992898
Alignment:
Q  266 ctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccct-aaaaacatcatt 364  Q
    ||||| |||||||||||||||  |||||||| ||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||| ||||||||| ||    
T  4993077 ctgctcaagacgaacagagactagtgaaactaagaatacaaactaaaggcgtcgtatataggctgaacacccgaaaataaacaccctgaaaaacatcctt 4992978  T
Q  365 gaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatcc 445  Q
    ||||| |||||||||  ||| ||| || || || |||||| ||||| ||||||||||| |||||||||| ||| |||||||    
T  4992977 gaggataacacccac-caaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcc 4992898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 238 - 346
Target Start/End: Original strand, 33788255 - 33788362
Alignment:
Q  238 cagcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacct 337  Q
    ||||||||| |||| || ||||||||| ||||||||||||||||||||||||||| || |||||||||||| ||||||| |||||||| ||||||||||     
T  33788255 cagcaaattttatttaa-aaccaaatctctgctaaagacgaacagagaccggtgataccgagaatacaaactaaaggcgccgtatatatgcggaacaccc 33788353  T
Q  338 gaaaataaa 346  Q
    |||||||||    
T  33788354 gaaaataaa 33788362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 248 - 448
Target Start/End: Complemental strand, 34230642 - 34230445
Alignment:
Q  248 tattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaac 347  Q
    ||||||||||||| ||| ||||| |||||||||||||| ||||||| ||| ||||||||||||||| || |||||||||||||||||||  |||||||||    
T  34230642 tattaaacaaccatatctctgctcaagacgaacagagatcggtgaa-ctgcgaatacaaacaaaagacgccgtatataggcggaacaccaaaaaataaac 34230544  T
Q  348 accctaaaaacatcattgaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaa 447  Q
    | | |||||||| |  | || |||||| ||||  ||||||| | ||| ||||| ||| |||||| | |||||||| ||||||| || ||| |||||||||    
T  34230543 atcgtaaaaacaccccttagaacaacatccac-caaaatacacgtcaccatct-aaacagactcttccacgaaaacgaccactataaaaacgatatccaa 34230446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 253 - 356
Target Start/End: Original strand, 10173223 - 10173326
Alignment:
Q  253 aacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccct 352  Q
    |||||||| || |||||| |||||||||||||| |||||||||  | ||||||||| ||| |||| ||||||||||||||||||||||||||||||||||    
T  10173223 aacaaccagattcctgctcaagacgaacagagatcggtgaaacatataatacaaactaaaagcgttgtatataggcggaacacctgaaaataaacaccct 10173322  T
Q  353 aaaa 356  Q
    ||||    
T  10173323 aaaa 10173326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 241 - 359
Target Start/End: Original strand, 41086436 - 41086554
Alignment:
Q  241 caaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaa 340  Q
    |||||| | ||||||||| | ||| ||||| |||||||||||||||| ||||||||||| ||||||| |||| || ||||||||||||| |||||| |||    
T  41086436 caaattttgttaaacaactagatctctgctcaagacgaacagagaccagtgaaactgagcatacaaagaaaaagcatcgtatataggcgaaacacccgaa 41086535  T
Q  341 aataaacaccctaaaaaca 359  Q
    |||||| ||||||||||||    
T  41086536 aataaataccctaaaaaca 41086554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 238 - 518
Target Start/End: Complemental strand, 12343257 - 12342992
Alignment:
Q  238 cagcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacct 337  Q
    ||||||||| |||| ||||||||   ||| | | ||||| |||||||||||  |||| ||||||||||||| |||| |||| || | ||||||||||||     
T  12343257 cagcaaattttatttaacaaccatggccccgttcaagacaaacagagaccgacgaaattgagaatacaaactaaagacgtcttacaaaggcggaacaccc 12343158  T
Q  338 gaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaa 437  Q
    |||||||||||||||            |||||||||| |||  |||| ||| | ||| || |||||| ||||||||||||||||| |||| ||||| |||    
T  12343157 gaaaataaacaccct------------gaggacaacatccatcaaaa-tacacgtcaccacctaaaacagactccttcacgaaaacgacctctgtaaaaa 12343071  T
Q  438 tgatatccaaccatctatcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaa 518  Q
     ||||||||||||   |||||||||||||||||||  | | ||||||||||||||   |||||| ||||||| ||||||||    
T  12343070 cgatatccaaccactcatcgtcactactcaccccc--caagaaacacccctcaaaaataaactcccagtcctcaacaccaa 12342992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 272 - 422
Target Start/End: Original strand, 37770316 - 37770461
Alignment:
Q  272 aagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggaca 371  Q
    ||||| |||||||| |||||||  |||||||||||||||   ||||||||||||||||||||||| |||||||||||||||||||||| || |||||| |    
T  37770316 aagacaaacagagatcggtgaatatgagaatacaaacaa---gcgtcgtatataggcggaacacccgaaaataaacaccctaaaaacacca-tgaggata 37770411  T
Q  372 acacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaa 422  Q
     |||||||  ||||| | | ||| || |||||| |||||||||||||||||    
T  37770412 ccacccac-caaaatccacgtcaccacctaaaacagactccttcacgaaaa 37770461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 236 - 347
Target Start/End: Original strand, 22884741 - 22884852
Alignment:
Q  236 agcagcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacac 335  Q
    |||| |||||| |||| || ||||||||| ||||| |||||||||| ||||||  || |  |||||||||||| ||||||||||||||||||||||||||    
T  22884741 agcatcaaattttatttaaaaaccaaatctctgctcaagacgaacaaagaccgacgatatagagaatacaaactaaaggcgtcgtatataggcggaacac 22884840  T
Q  336 ctgaaaataaac 347  Q
    | ||||||||||    
T  22884841 ccgaaaataaac 22884852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 241 - 346
Target Start/End: Complemental strand, 42802535 - 42802427
Alignment:
Q  241 caaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatata---ggcggaacacct 337  Q
    |||||| |||||||||||| |||||||  | |||||||||||||| | |||||||||||||||||||||||||| ||||||||||   |||||||||||     
T  42802535 caaattttattaaacaacctaatccctattcaagacgaacagagatcagtgaaactgagaatacaaacaaaaggtgtcgtatatatacggcggaacaccc 42802436  T
Q  338 gaaaataaa 346  Q
     ||||||||    
T  42802435 aaaaataaa 42802427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 241 - 359
Target Start/End: Original strand, 33533376 - 33533500
Alignment:
Q  241 caaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatatag------gcggaaca 334  Q
    |||||| |||| |||| ||| ||| ||||| ||||||||||||||| ||||||||| || |||||||||||||||| | |||||||      ||||||||    
T  33533376 caaattttatttaacagccagatctctgctcaagacgaacagagactggtgaaactaaggatacaaacaaaaggcgccatatataggcggaagcggaaca 33533475  T
Q  335 cctgaaaataaacaccctaaaaaca 359  Q
    | |||||||||||||||||||||||    
T  33533476 cttgaaaataaacaccctaaaaaca 33533500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 272 - 357
Target Start/End: Original strand, 41113403 - 41113488
Alignment:
Q  272 aagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa 357  Q
    |||||||| |||||||||||||||||||||||||||| |||| | | |||||||||||||||| | ||||||||| ||||||||||    
T  41113403 aagacgaaaagagaccggtgaaactgagaatacaaactaaagacattgtatataggcggaacatccgaaaataaataccctaaaaa 41113488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 241 - 370
Target Start/End: Complemental strand, 29997394 - 29997265
Alignment:
Q  241 caaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaa 340  Q
    |||||| |||||||||| |   || ||| ||||||||||||||||||| ||||| ||| |||| |||||||||||  |||||||| |||||||| | |||    
T  29997394 caaattttattaaacaatctggtctctggtaaagacgaacagagaccgatgaaattgaaaataaaaacaaaaggcaccgtatataagcggaacatccgaa 29997295  T
Q  341 aataaacaccctaaaaacatcattgaggac 370  Q
    |||||||| ||||||| ||||  |||||||    
T  29997294 aataaacatcctaaaatcatccctgaggac 29997265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 238 - 350
Target Start/End: Original strand, 25504518 - 25504629
Alignment:
Q  238 cagcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacct 337  Q
    ||||||||| ||||||| || || ||||||||| ||||| |||||| ||||||||  | |||||||||||||||||||| ||||||||| || ||||||     
T  25504518 cagcaaattttattaaa-aatcagatccctgctcaagacaaacagaaaccggtgattcagagaatacaaacaaaaggcgccgtatatagacgaaacaccc 25504616  T
Q  338 gaaaataaacacc 350  Q
     ||||||||||||    
T  25504617 aaaaataaacacc 25504629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 248 - 359
Target Start/End: Original strand, 29139591 - 29139700
Alignment:
Q  248 tattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaac 347  Q
    ||||||||||||| ||| ||||||  ||| |||| ||||||||||||||||| ||||||| ||||||||||||||||  | |||||||  |||||||||     
T  29139591 tattaaacaaccagatctctgcta--gacaaacaaagaccggtgaaactgaggatacaaataaaaggcgtcgtatattagtggaacactcgaaaataaat 29139688  T
Q  348 accctaaaaaca 359  Q
    ||| ||||||||    
T  29139689 accttaaaaaca 29139700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 238 - 357
Target Start/End: Complemental strand, 4472395 - 4472276
Alignment:
Q  238 cagcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacct 337  Q
    ||||||||| |||| ||||| |  ||||| | | |||| ||||||||  ||||||| | |||||||||||| ||||||||||||||||| ||||||| |     
T  4472395 cagcaaattttattcaacaatctgatccccgttcaagatgaacagagttcggtgaatcagagaatacaaactaaaggcgtcgtatatagacggaacatcc 4472296  T
Q  338 gaaaataaacaccctaaaaa 357  Q
    ||||||||||||| ||||||    
T  4472295 gaaaataaacaccataaaaa 4472276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 248 - 326
Target Start/End: Complemental strand, 10772967 - 10772889
Alignment:
Q  248 tattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatatag 326  Q
    |||||||||||| |||||||| | ||||||||||||||||| ||||||| ||||||||||||||| | | |||||||||    
T  10772967 tattaaacaacctaatccctgttcaagacgaacagagaccgatgaaactaagaatacaaacaaaaagtgacgtatatag 10772889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 241 - 336
Target Start/End: Complemental strand, 15361172 - 15361078
Alignment:
Q  241 caaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacc 336  Q
    |||||| ||||||| || |||||||||||| |||||||| |||||| |||||||| || ||||||||| ||||||| ||||||||| || ||||||    
T  15361172 caaattttattaaa-aatcaaatccctgctcaagacgaatagagactggtgaaacagataatacaaacgaaaggcgccgtatatagacgaaacacc 15361078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 241 - 344
Target Start/End: Complemental strand, 29487548 - 29487447
Alignment:
Q  241 caaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaa 340  Q
    |||||| ||||||| ||||| ||||||||| |||| ||||||||||||||||  |  ||||||||| | ||||| | |||||||||||||||||||||||    
T  29487548 caaattttattaaa-aaccagatccctgctcaagatgaacagagaccggtgattcatagaatacaa-ctaaaggagccgtatataggcggaacacctgaa 29487451  T
Q  341 aata 344  Q
    ||||    
T  29487450 aata 29487447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 241 - 351
Target Start/End: Complemental strand, 1269900 - 1269791
Alignment:
Q  241 caaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaa 340  Q
    |||||| |||| ||||| |||||| ||| | |||||||| |||| ||||||||| ||||||||||||  |||||||||||| | ||||| ||||||  |     
T  1269900 caaattttatttaacaatcaaatctctgttcaagacgaa-agaggccggtgaaattgagaatacaaattaaaggcgtcgtacaaaggcgaaacacccaag 1269802  T
Q  341 aataaacaccc 351  Q
    |||||||||||    
T  1269801 aataaacaccc 1269791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 266 - 347
Target Start/End: Complemental strand, 27740412 - 27740331
Alignment:
Q  266 ctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaac 347  Q
    ||||| |||||||||| ||| || |||  | || ||||||||| |||||||||||||||||| |||||||| ||||||||||    
T  27740412 ctgctcaagacgaacaaagatcgatgattcagataatacaaactaaaggcgtcgtatataggtggaacacccgaaaataaac 27740331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 257 - 318
Target Start/End: Original strand, 31115185 - 31115246
Alignment:
Q  257 accaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtc 318  Q
    |||| ||| ||||| |||||||| |||||| |||||||||||||||||| |||||| |||||    
T  31115185 accagatcactgctcaagacgaatagagacgggtgaaactgagaatacagacaaaaagcgtc 31115246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 37559884 - 37559832
Alignment:
Q  262 atccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaagg 314  Q
    ||||||| | |||||||||||||| |||||||| ||||||||||||| |||||    
T  37559884 atccctgtttaagacgaacagagatcggtgaaattgagaatacaaactaaagg 37559832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 356
Target Start/End: Complemental strand, 20572521 - 20572407
Alignment:
Q  241 caaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaa 340  Q
    |||||| |||| || ||||| ||| || || || |||||||||||||| |||  | ||||||| |||||||| | |||||||||||| | |||| || ||    
T  20572521 caaattttatttaaaaaccacatctctcctcaaaacgaacagagaccgatgattcagagaatagaaacaaaatgtgtcgtatataggtgaaaca-ctcaa 20572423  T
Q  341 aataaacaccctaaaa 356  Q
    |||||||||| |||||    
T  20572422 aataaacaccataaaa 20572407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 337
Target Start/End: Original strand, 40360652 - 40360687
Alignment:
Q  302 tacaaacaaaaggcgtcgtatataggcggaacacct 337  Q
    |||||||||||| |||||||||||||||||||||||    
T  40360652 tacaaacaaaagacgtcgtatataggcggaacacct 40360687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 350
Target Start/End: Complemental strand, 44594071 - 44594018
Alignment:
Q  297 gagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacacc 350  Q
    |||||||||||||||||||||||| |||||  |||| | | |||||||||||||    
T  44594071 gagaatacaaacaaaaggcgtcgtgtatagatggaatatccgaaaataaacacc 44594018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 5e-51; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 238 - 468
Target Start/End: Complemental strand, 8297922 - 8297694
Alignment:
Q  238 cagcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacct 337  Q
    ||||||||| |||| ||||| || ||| || || |||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||    
T  8297922 cagcaaattttattgaacaatcagatctctactcaagacgaacagagaccggtgaaactgagaatacaaa-aaaaggcgttgtacataggcggaacacct 8297824  T
Q  338 gaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaa 437  Q
    ||||||| |||||||||||||| |  |||||| |||| ||||  ||||||| ||||| || |||||| | ||||||||| ||||| ||||| |||| |||    
T  8297823 gaaaatacacaccctaaaaacacccctgaggataacatccac-caaaatacacatcaccacctaaaacacactccttcaagaaaaagaccaatgtaaaaa 8297725  T
Q  438 tgatatccaaccatctatcgtcactactcac 468  Q
     ||| |||||||| |||||||||||||||||    
T  8297724 cgatttccaaccacctatcgtcactactcac 8297694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 241 - 469
Target Start/End: Original strand, 26405180 - 26405406
Alignment:
Q  241 caaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaa 340  Q
    |||||| ||||||||||||| ||  ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||    
T  26405180 caaattttattaaacaaccagatttctgctcaagacgaacaaagaccggtgaaactgagaatacaaacaaaaggcgtcgtatatagtcggaacacccgaa 26405279  T
Q  341 aataaacaccctaaaaacatcattgaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatga 440  Q
    |||||||||| |||||||| |  ||||||||||| ||||  ||||||| | ||| || |||||| ||||| ||||| | |||||| ||||||  |||  |    
T  26405280 aataaacaccttaaaaacacccctgaggacaacaaccac-caaaatacacgtcaccacctaaaacagacttcttcatggaaatga-cactgttaaaacca 26405377  T
Q  441 tatccaaccatctatcgtcactactcacc 469  Q
    ||||||| || | ||||||||||||||||    
T  26405378 tatccaatcacccatcgtcactactcacc 26405406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 238 - 359
Target Start/End: Complemental strand, 25992453 - 25992332
Alignment:
Q  238 cagcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacct 337  Q
    ||||||||  ||||||||||||| ||| ||||| ||||||||||||||||||||||| ||| ||||||||||||||||| |||||||| ||||||||||     
T  25992453 cagcaaatattattaaacaaccagatctctgctcaagacgaacagagaccggtgaaaatgataatacaaacaaaaggcgccgtatatatgcggaacaccc 25992354  T
Q  338 gaaaataaacaccctaaaaaca 359  Q
    || |||||||||||||||||||    
T  25992353 gacaataaacaccctaaaaaca 25992332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 242 - 519
Target Start/End: Original strand, 26045596 - 26045874
Alignment:
Q  242 aaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaa 341  Q
    ||||| ||||||||||| | |||  |||| || |||||||||||||||||||  |||| |||||||||||||||| ||||||||| ||||||| |  |||    
T  26045596 aaattttattaaacaactagatcaatgctcaaaacgaacagagaccggtgaagttgagcatacaaacaaaaggcgccgtatatagacggaacatccaaaa 26045695  T
Q  342 ataaacaccctaaaaa-catcattgaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatga 440  Q
    |||||||||||||||| |  |  |||||||||||||||| |||| | | | ||| || |||||| ||||| ||||| |||||||||||| ||| ||| ||    
T  26045696 ataaacaccctaaaaaacgcccctgaggacaacacccaccaaaatt-cacgtcaccacctaaaacagacttcttcatgaaaatgaccacggtaaaaacga 26045794  T
Q  441 tatccaac--catctatcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaa 519  Q
     |||||||  |  | ||||||||||||||||||     |||||||||||||||| | ||||||||| |||| |||||||||    
T  26045795 aatccaacacctcccatcgtcactactcaccccaaag-aaaaacacccctcaaaattaaactctcaatcctaaacaccaaa 26045874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 238 - 422
Target Start/End: Original strand, 7194930 - 7195113
Alignment:
Q  238 cagcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacct 337  Q
    ||||||||| ||||||||||||| |||||| || |||||||||| ||| || |||||||||||||| | |||||| | ||||| |||| |||||||| |     
T  7194930 cagcaaattttattaaacaaccagatccctactcaagacgaacaaagatcgatgaaactgagaatatagacaaaatgagtcgtttatatgcggaacatcc 7195029  T
Q  338 gaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaa 422  Q
     ||||||||||||||||||||| |  || |||||||||||||  ||||||| | ||| || |||||| |||||||||||| ||||    
T  7195030 aaaaataaacaccctaaaaacaccgctgcggacaacacccac-caaaatacacgtcaccacctaaaacagactccttcacaaaaa 7195113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 265 - 472
Target Start/End: Complemental strand, 7682978 - 7682770
Alignment:
Q  265 cctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcatt 364  Q
    |||||| ||||||||   |||| ||||||||||||||||||||  ||||||||||||||||||||||||| | |||||||| ||||| ||||| |    |    
T  7682978 cctgctcaagacgaatgtagacgggtgaaactgagaatacaaattaaaggcgtcgtatataggcggaacatccgaaaataagcacccaaaaaatacttat 7682879  T
Q  365 gaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaa--tgatatccaaccatctatcgtcact 462  Q
    ||| |||||||||||  ||||||| ||||| || ||||||||||||| ||||| |||| |||||| ||| |||  | || ||  |||||| |||||||||    
T  7682878 gagaacaacacccac-caaaatacacatcaccacctaaaatagactctttcacaaaaacgaccaccgtaaaaactttatctcgcaccatccatcgtcact 7682780  T
Q  463 actcaccccc 472  Q
    ||||| ||||    
T  7682779 actcaacccc 7682770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 266 - 357
Target Start/End: Original strand, 13953903 - 13953996
Alignment:
Q  266 ctgctaaagacgaacagagaccggtg--aaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa 357  Q
    ||||| ||||||||||||||||||||  ||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  13953903 ctgctcaagacgaacagagaccggtgtgaaactgagagtacaaactaaaggcgccgtatataggcggaacacctgaaaataaacaccttaaaaa 13953996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 237 - 422
Target Start/End: Complemental strand, 30097786 - 30097601
Alignment:
Q  237 gcagcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacc 336  Q
    ||||||| || | ||||||||| | ||  ||||| |||||||||| |||||||| ||    ||||||||||| |||| || |||||||||||||||||||    
T  30097786 gcagcaattttttttaaacaactagatttctgcttaagacgaacaaagaccggtaaattaaagaatacaaactaaagacgccgtatataggcggaacacc 30097687  T
Q  337 tgaaaataaacacccta-aaaacatcattgaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaa 422  Q
     |||||||||||||||| ||||||||  ||| ||||||||||||  ||||||| | ||| || |||||| |||||||||||||||||    
T  30097686 cgaaaataaacaccctaaaaaacatccatgatgacaacacccac-caaaatacacgtcaccacctaaaacagactccttcacgaaaa 30097601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 241 - 450
Target Start/End: Complemental strand, 10175128 - 10174921
Alignment:
Q  241 caaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaa 340  Q
    |||||| |||||| |||||| |||| | || || | |||||||||||||||||| | |||||||||||||||||| ||||||||||||  |||||||| |    
T  10175128 caaattttattaatcaaccagatccttactcaaaatgaacagagaccggtgaaattaagaatacaaacaaaaggcatcgtatataggcaaaacacctg-a 10175030  T
Q  341 aataaacaccctaaaaacatcattgaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatga 440  Q
    |||||||| |||||||||| |   |||||||||||||||  ||| ||| | | | || |||||| ||||||||||   |||| |||||| ||| ||| ||    
T  10175029 aataaacatcctaaaaacacctccgaggacaacacccac-caaagtacacgtaaccacctaaaacagactccttctaaaaaacgaccacggtaaaaacga 10174931  T
Q  441 tatccaacca 450  Q
    ||||||||||    
T  10174930 tatccaacca 10174921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 238 - 447
Target Start/End: Original strand, 33109831 - 33110035
Alignment:
Q  238 cagcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacct 337  Q
    ||||||||  |||||||||| |||||| ||||| |||||||||| | |  |||||||||||||||||||||||||| ||   | ||||| || ||||||     
T  33109831 cagcaaatattattaaacaatcaaatctctgcttaagacgaacataaattggtgaaactgagaatacaaacaaaagacg--ctgtatagccgaaacaccc 33109928  T
Q  338 gaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaa 437  Q
    ||||||||||||  |||||||| | |  | ||||||||||||  ||||||| | |||||| |||||| | || |||||||||||| |||||||||| |||    
T  33109929 gaaaataaacactttaaaaacaccct--atgacaacacccac-caaaatacacgtcatcacctaaaacaaaccccttcacgaaaacgaccactgtaaaaa 33110025  T
Q  438 tgatatccaa 447  Q
     |||||||||    
T  33110026 cgatatccaa 33110035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 241 - 519
Target Start/End: Original strand, 14302076 - 14302355
Alignment:
Q  241 caaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaa 340  Q
    |||||| ||||| | ||||| ||||||| | ||||| |||| | | | |||||| ||| |||| |||||| || || |||||||||  ||||||||  ||    
T  14302076 caaattttattagagaaccagatccctgtttaagacaaacaaaaatcagtgaaattgaaaatataaacaagagacgccgtatatagaaggaacacccaaa 14302175  T
Q  341 aataaacaccctaaaaacatcattgaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatga 440  Q
    |||||| | |||||||||| |  ||| ||||||||||||  ||||||| | ||| || |||||| ||| |||||| |||||| ||||| |||| ||| ||    
T  14302176 aataaaaatcctaaaaacacccctgatgacaacacccac-caaaatacacgtcaccacctaaaacagattccttcgcgaaaacgaccaatgtaaaaacga 14302274  T
Q  441 tatcca--accatctatcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaa 519  Q
    ||||||  |||| || ||||||||||||| ||||    ||||| |||||||||| | |||||| || ||||||||||||||    
T  14302275 tatccaacaccacctgtcgtcactactcatccccaaagaaaaatacccctcaaaattaaactcccactcctgaacaccaaa 14302355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 248 - 356
Target Start/End: Complemental strand, 5187384 - 5187276
Alignment:
Q  248 tattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaac 347  Q
    ||||||||||| ||||| ||||| |||| || |||||| |||||||| ||||||||||||||||||||| || ||||||  | | |||| ||||||||||    
T  5187384 tattaaacaactaaatctctgctcaagaagagcagagatcggtgaaattgagaatacaaacaaaaggcgccgcatatagatgaagcacccgaaaataaac 5187285  T
Q  348 accctaaaa 356  Q
    ||| |||||    
T  5187284 accataaaa 5187276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 238 - 350
Target Start/End: Complemental strand, 8731389 - 8731278
Alignment:
Q  238 cagcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacct 337  Q
    ||||||||| ||||||| || || ||||||||| ||||| |||||| ||||||||  | |||||||||||||||||||| ||||||||| || ||||||     
T  8731389 cagcaaattttattaaa-aatcagatccctgctcaagacaaacagaaaccggtgattcagagaatacaaacaaaaggcgccgtatatagacgaaacaccc 8731291  T
Q  338 gaaaataaacacc 350  Q
     ||||||||||||    
T  8731290 aaaaataaacacc 8731278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 238 - 361
Target Start/End: Original strand, 33258518 - 33258641
Alignment:
Q  238 cagcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacct 337  Q
    ||||||||  ||||||||| | ||||  || || || |||||||||||||||||||| ||  |||||||| |||||||| |||||||| | | ||||||     
T  33258518 cagcaaatattattaaacagctaaattgctactcaaaacgaacagagaccggtgaaattggaaatacaaataaaaggcgccgtatatatgtgaaacaccc 33258617  T
Q  338 gaaaataaacaccctaaaaacatc 361  Q
    ||||||||||||| ||||||||||    
T  33258618 gaaaataaacaccataaaaacatc 33258641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 256 - 342
Target Start/End: Complemental strand, 27713507 - 27713421
Alignment:
Q  256 aaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaa 342  Q
    ||||| ||||||| | ||||||||| |||||| ||||||||||| |||||||| ||||||| | ||||||||||||||||| |||||    
T  27713507 aaccagatccctgttcaagacgaactgagaccagtgaaactgaggatacaaacgaaaggcgccatatataggcggaacacccgaaaa 27713421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 262 - 350
Target Start/End: Complemental strand, 31742592 - 31742504
Alignment:
Q  262 atccctgctaaagacgaacagagaccggtgaaactgagaa-tacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacacc 350  Q
    ||||||||  ||||||||||||||||||||  ||  |||| ||||||||||||||| ||||||||||||||||||| ||||| |||||||    
T  31742592 atccctgcacaagacgaacagagaccggtgttaca-agaagtacaaacaaaaggcgccgtatataggcggaacacccgaaaacaaacacc 31742504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 376
Target Start/End: Original strand, 7391660 - 7391766
Alignment:
Q  272 aagacgaacagagaccggtgaaactgagaatacaaa--caaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgagga 369  Q
    ||||||||||||||||||||||| ||||||||||||    ||| | |  |||||||||||||| |||||||| || ||| |||||||||| |  ||||||    
T  7391660 aagacgaacagagaccggtgaaaatgagaatacaaagtgtaaatgtgctgtatataggcggaaaacctgaaagtacacaacctaaaaacacccatgagga 7391759  T
Q  370 caacacc 376  Q
    |||||||    
T  7391760 caacacc 7391766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 263 - 314
Target Start/End: Original strand, 21391932 - 21391983
Alignment:
Q  263 tccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaagg 314  Q
    |||||||| |||||||||| |||||||||||||||||||||||||| |||||    
T  21391932 tccctgctcaagacgaacaaagaccggtgaaactgagaatacaaactaaagg 21391983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 266 - 344
Target Start/End: Complemental strand, 23426724 - 23426646
Alignment:
Q  266 ctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaata 344  Q
    ||||| |||| ||||||||||||||||  | ||||||||||  |||||| | ||||||||||||||||||| |||||||    
T  23426724 ctgctcaagaggaacagagaccggtgattcagagaatacaactaaaaggtgccgtatataggcggaacacccgaaaata 23426646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 357
Target Start/End: Original strand, 4941305 - 4941390
Alignment:
Q  272 aagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctg-aaaataaacaccctaaaaa 357  Q
    ||||||||||| |||||  ||||| ||||||||||| | || ||| ||||||||| ||||||||||| |||||||||||| ||||||    
T  4941305 aagacgaacagggaccgacgaaacagagaatacaaa-agaatgcgccgtatatagacggaacacctgaaaaataaacaccataaaaa 4941390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 348
Target Start/End: Original strand, 24071918 - 24072000
Alignment:
Q  266 ctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaaca 348  Q
    ||||| ||||| |||| |||||| |||  | || ||||||||| || |||| ||||||||||||||||||| |||||||||||    
T  24071918 ctgcttaagacaaacaaagaccgatgattcagataatacaaactaagggcgccgtatataggcggaacacccgaaaataaaca 24072000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 319 - 384
Target Start/End: Complemental strand, 37108170 - 37108105
Alignment:
Q  319 gtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaa 384  Q
    |||||||||||||||| |  ||||||||||||||||||||| |  |||||| ||||||||| ||||    
T  37108170 gtatataggcggaacatcaaaaaataaacaccctaaaaacacccatgaggataacacccaccaaaa 37108105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 24401135 - 24401099
Alignment:
Q  275 acgaacagagaccggtgaaactgagaatacaaacaaa 311  Q
    |||||||||||||||||| ||||||||||||||||||    
T  24401135 acgaacagagaccggtgagactgagaatacaaacaaa 24401099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 357
Target Start/End: Original strand, 25657773 - 25657867
Alignment:
Q  262 atccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa 357  Q
    ||||||||| || ||||||| | | |||||||   |||| ||||||| | ||||| ||||||||||| |||||||| |||||||||||| ||||||    
T  25657773 atccctgctcaaaacgaacataaatcggtgaataagagattacaaactacaggcgccgtatataggcagaacacct-aaaataaacaccataaaaa 25657867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 287 - 357
Target Start/End: Original strand, 4914177 - 4914247
Alignment:
Q  287 cggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa 357  Q
    |||||||||||||||||| ||  ||||| |||||||||| |||||||| | || ||||||| | |||||||    
T  4914177 cggtgaaactgagaatactaattaaaggtgtcgtatatatgcggaacatccgataataaaccctctaaaaa 4914247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 337
Target Start/End: Original strand, 34345831 - 34345860
Alignment:
Q  308 caaaaggcgtcgtatataggcggaacacct 337  Q
    ||||||||||||||||||||||||||||||    
T  34345831 caaaaggcgtcgtatataggcggaacacct 34345860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 5e-51; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 238 - 519
Target Start/End: Original strand, 38636863 - 38637143
Alignment:
Q  238 cagcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacct 337  Q
    ||||||||| |||||||||||||  |||| | | | ||||||||||||||||||||| ||||| ||||||||| ||||| ||||| ||||||||||||||    
T  38636863 cagcaaattttattaaacaaccaggtccccgttcaggacgaacagagaccggtgaaaatgagactacaaacaagaggcgccgtat-taggcggaacacct 38636961  T
Q  338 gaaaataaacaccctaaa-aacatcattgaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataa 436  Q
    ||||||||||||| |||| || | |   |||||||||||||||  |||||||   ||| || |||||| | |||||||||||||||  ||| ||||| ||    
T  38636962 gaaaataaacaccttaaataaaacccccgaggacaacacccac-gaaaatacatgtcaccacctaaaacaaactccttcacgaaaacaaccgctgtaaaa 38637060  T
Q  437 atgatatccaaccatctatcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaa 519  Q
    |||||||||||||| | |||||||||||||||||||||  |||||||||||| | | |||||||| || || |||||||||||    
T  38637061 atgatatccaaccacccatcgtcactactcacccccttagaaaaacaccccttatactaaaactcccaatcttgaacaccaaa 38637143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 241 - 520
Target Start/End: Original strand, 41117600 - 41117878
Alignment:
Q  241 caaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaa 340  Q
    |||||| ||||||||||| | ||| ||||| ||||||||||||||| ||||||| ||||| ||||||||| |||| |||||||||||||||||||| |||    
T  41117600 caaattttattaaacaactagatctctgctcaagacgaacagagacaggtgaaattgagactacaaacaagaggcatcgtatataggcggaacacccgaa 41117699  T
Q  341 aataaacaccctaaa-aacatcattgaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatg 439  Q
    ||||||||||||||| |||| || ||||||||||||||||  |||||||  |||| || ||| || |||||| | ||||||||  |||  |||| ||| |    
T  41117700 aataaacaccctaaataacacca-tgaggacaacacccac-caaaatacatatcaccacctagaacagactcatgcacgaaaacaaccgttgtaaaaacg 41117797  T
Q  440 atatccaaccatctatcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaac 520  Q
    ||||||||||| | ||||||| |||||||||| ||  |||||||||||||| | |||||||| |  || ||||||||||||    
T  41117798 atatccaaccacccatcgtcattactcacccctttagaaaaacacccctcagaataaaactcccgatcatgaacaccaaac 41117878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 235 - 352
Target Start/End: Complemental strand, 42719611 - 42719494
Alignment:
Q  235 aagcagcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaaca 334  Q
    ||||| |||||| |||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||| || |||||||| |||||| |    
T  42719611 aagcaacaaattttattaaacaatcaaatccctgctcaagacgaatagagaccggtgaaactgagaatacaaacaaaagacgccgtatataagcggaaaa 42719512  T
Q  335 cctgaaaataaacaccct 352  Q
    ||||||||||||||||||    
T  42719511 cctgaaaataaacaccct 42719494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 252 - 519
Target Start/End: Original strand, 16832663 - 16832931
Alignment:
Q  252 aaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccc 351  Q
    ||||||||| | |||| || ||||| |||||| | ||||||||||||||||||||||||||||||  | ||||||||||||||||  |||||||||||||    
T  16832663 aaacaaccagaccccttctcaagacaaacagaaatcggtgaaactgagaatacaaacaaaaggcgctgcatataggcggaacaccaaaaaataaacaccc 16832762  T
Q  352 taaaaacatcattgaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacg-aaaatgaccactgtataaatgatatcca--ac 448  Q
    |||||||     |||||||||||||||| ||| | |||  ||| || |||||| | | |||| |||| |||| |||| ||||| ||| ||||||||  ||    
T  16832763 taaaaactctcctgaggacaacacccaccaaataaacg--tcaccacctaaaacatattcctgcacgaaaaacgaccgctgtaaaaaagatatccaacac 16832860  T
Q  449 catctatcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaa 519  Q
    || |  |||||||||||||||||     |||||||||||||||| | |||||| ||||| |||||||||||    
T  16832861 cacccgtcgtcactactcaccccaaagaaaaaacacccctcaaaattaaactcacagtcttgaacaccaaa 16832931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 238 - 326
Target Start/End: Complemental strand, 9262895 - 9262807
Alignment:
Q  238 cagcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatatag 326  Q
    ||||||||| ||||||||||||||||||| ||| |||||||||| |||||| ||||||||||||||||||||||||||| |||||||||    
T  9262895 cagcaaattttattaaacaaccaaatccccgctcaagacgaacaaagaccgatgaaactgagaatacaaacaaaaggcgccgtatatag 9262807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 371 - 519
Target Start/End: Complemental strand, 49528390 - 49528243
Alignment:
Q  371 aacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcaccc 470  Q
    ||||||||| ||||| || | |||||| |||||||||||||||||| || |  ||||||| |  ||| ||||| |||||||| ||| |||||||||||||    
T  49528390 aacacccaccaaaaa-acacgtcatcacctaaaatagactccttcatgacaccgaccactattaaaacgatattcaaccatccatcttcactactcaccc 49528292  T
Q  471 ccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaa 519  Q
    ||||  |||||||||||||||| |||||||||||||| |||||||||||    
T  49528291 ccttagaaaaacacccctcaaaataaaactctcagtcttgaacaccaaa 49528243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 266 - 357
Target Start/End: Complemental strand, 28967299 - 28967208
Alignment:
Q  266 ctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa 357  Q
    ||||| |||||||||||||| ||||||||| || ||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||    
T  28967299 ctgctcaagacgaacagagatcggtgaaacagataatacaaacgaaaggcgctgtatataggcggaacacctgaaaataaacaccctaaaaa 28967208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 239 - 519
Target Start/End: Original strand, 19814847 - 19815130
Alignment:
Q  239 agcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaac-aaaaggcgtcgtatataggcggaacacct 337  Q
    |||||||| |||| |||||||| ||||||||| ||||||||||||||||| | |||| |||| ||||||| ||||||||| ||||||| || |||||||     
T  19814847 agcaaattttatttaacaaccagatccctgctcaagacgaacagagaccgataaaacagagagtacaaactaaaaggcgttgtatataagcagaacaccc 19814946  T
Q  338 gaaaataaacaccctaaaa-acatcattgaggacaacaccca-caaaaaatacg-catcatcatctaaaatagactccttcacgaaaatgaccactgtat 434  Q
     |||||||||| | ||||| |||   |  ||||||||||||| ||||||| ||| || ||  | || ||| ||||  |||||||||||||||||| |||     
T  19814947 aaaaataaacatcataaaagacactttcaaggacaacacccaccaaaaaacacgtcaccagtacctcaaacagacgtcttcacgaaaatgaccacggtaa 19815046  T
Q  435 aaatgatatcca--accatctatcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaa 519  Q
    ||||||||||||  ||||||  | |||||||||||||||   | || |||||  |||||  | |||||||||||||| |||||||||    
T  19815047 aaatgatatccaataccatccgttgtcactactcacccc---caaagaacacttctcaagattaaactctcagtcctcaacaccaaa 19815130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 262 - 472
Target Start/End: Original strand, 22810826 - 22811023
Alignment:
Q  262 atccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatc 361  Q
    ||||||||| ||||||||||||||| ||||||| ||||||||||||| ||||||| |||||||| |||||| | | |||| |||||||||||            
T  22810826 atccctgctcaagacgaacagagactggtgaaattgagaatacaaac-aaaggcgccgtatataagcggaatatccgaaagtaaacacccta-------- 22810916  T
Q  362 attgaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcac 461  Q
       ||||||  |||||||  ||||||| | ||| |  |||||| ||||| ||||||||||  |||||||||| ||| ||||||| |||||| ||||||||    
T  22810917 ---gaggacctcacccac-caaaatacacgtcacctcctaaaacagactgcttcacgaaaccgaccactgtaaaaacgatatcctaccatccatcgtcac 22811012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 265 - 351
Target Start/End: Complemental strand, 48098731 - 48098645
Alignment:
Q  265 cctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccc 351  Q
    |||||| ||||||||| |||| |||||||||||| |||||||||||||| ||  |||||||||||||||||| ||||||||||||||    
T  48098731 cctgctcaagacgaacggagatcggtgaaactgaaaatacaaacaaaagacgcagtatataggcggaacacccgaaaataaacaccc 48098645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 238 - 336
Target Start/End: Complemental strand, 52009277 - 52009179
Alignment:
Q  238 cagcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacc 336  Q
    ||||||||| |||||||| |||| ||||||||  |||||||| ||||| ||||||||||||| || |||||| |||||| |||||||||||||||||||    
T  52009277 cagcaaattttattaaactaccagatccctgcccaagacgaatagagatcggtgaaactgagcatgcaaacataaggcgccgtatataggcggaacacc 52009179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 241 - 357
Target Start/End: Original strand, 2061464 - 2061580
Alignment:
Q  241 caaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaa 340  Q
    |||||| |||||||||  || ||||||||  |||||||||||| || | ||||||||||||||||||||| |||  | |||||||||||||||| ||||     
T  2061464 caaattttattaaacagtcagatccctgcccaagacgaacagaaactgatgaaactgagaatacaaacaagaggtcttgtatataggcggaacatctgat 2061563  T
Q  341 aataaacaccctaaaaa 357  Q
    ||||||||| |||||||    
T  2061564 aataaacacactaaaaa 2061580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 359
Target Start/End: Complemental strand, 25754325 - 25754206
Alignment:
Q  240 gcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctga 339  Q
    ||||||| | |||||||||  ||||| || | |||||||||| ||||| ||  ||||||||||||||| |||| ||| ||||||||| ||||||| ||||    
T  25754325 gcaaattttgttaaacaacataatccatgttcaagacgaacaaagaccagtataactgagaatacaaataaaaagcgccgtatatagacggaacatctga 25754226  T
Q  340 aaataaacaccctaaaaaca 359  Q
    ||||||||||| ||||||||    
T  25754225 aaataaacaccataaaaaca 25754206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 241 - 433
Target Start/End: Complemental strand, 49747977 - 49747785
Alignment:
Q  241 caaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaa 340  Q
    |||||| ||||||||||||| || |  ||| |||||||| |||||| ||||||| | || ||||||||||||| | ||||||||| |||||||| |  ||    
T  49747977 caaattttattaaacaaccatattctcgctcaagacgaatagagactggtgaaatttagcatacaaacaaaagacatcgtatatatgcggaacatccaaa 49747878  T
Q  341 aataaacaccct-aaaaacatcattgaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgta 433  Q
    |||||||||| | ||||||| |  ||||||||||||||||  ||||| |   ||| || |||||| |||||| |||||||||| ||||| ||||    
T  49747877 aataaacaccataaaaaacacctctgaggacaacacccac-caaaattcatgtcaccacctaaaacagactctttcacgaaaacgaccattgta 49747785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 364 - 519
Target Start/End: Complemental strand, 25753499 - 25753343
Alignment:
Q  364 tgaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaac--catctatcgtcac 461  Q
    |||||||||||||||| |||| |||   |||||| |||||| | ||||||||||||||| | |||||||| ||  | ||||||||  |||  ||||||||    
T  25753499 tgaggacaacacccaccaaaa-tacaagtcatcacctaaaacaaactccttcacgaaaagggccactgtaaaatcggtatccaacatcattcatcgtcac 25753401  T
Q  462 tactcacccccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaa 519  Q
    |||||||||||    |||||||||||||||| | ||||| ||||||||||||| ||||    
T  25753400 tactcacccccaaagaaaaacacccctcaaaattaaactttcagtcctgaacatcaaa 25753343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 248 - 346
Target Start/End: Original strand, 35947946 - 35948044
Alignment:
Q  248 tattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaa 346  Q
    ||||||||||||| |||| |||| |||||||||| | ||  ||||| ||||||||||||||||||| || | |||||| |||||||||| |||||||||    
T  35947946 tattaaacaaccagatccttgcttaagacgaacatatactagtgaatctgagaatacaaacaaaagacgccatatataagcggaacacccgaaaataaa 35948044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 240 - 344
Target Start/End: Original strand, 20632128 - 20632233
Alignment:
Q  240 gcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaac-aaaaggcgtcgtatataggcggaacacctg 338  Q
    ||||||| |||| || || || || |||||| ||||||||| |||||||||||  | |||||||||||| ||||||||| |||||||||||||| ||| |    
T  20632128 gcaaattttatttaaaaaacagattcctgcttaagacgaactgagaccggtgattcagagaatacaaactaaaaggcgttgtatataggcggaatacccg 20632227  T
Q  339 aaaata 344  Q
    ||||||    
T  20632228 aaaata 20632233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 276 - 349
Target Start/End: Complemental strand, 46487694 - 46487621
Alignment:
Q  276 cgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacac 349  Q
    |||||||||||||||||    |||||||||||| |||||| |||||||||||||||||| | ||||||||||||    
T  46487694 cgaacagagaccggtgatttagagaatacaaactaaaggcatcgtatataggcggaacatccgaaaataaacac 46487621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 412 - 519
Target Start/End: Complemental strand, 19673377 - 19673271
Alignment:
Q  412 cttcacgaaaatgaccactgtataaatgatatccaac--catctatcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcagtcct 509  Q
    |||||||||||||||||||||| ||   |||||||||  ||||  ||||||||||||||||||    || ||||| ||||||| | ||||||||||||||    
T  19673377 cttcacgaaaatgaccactgtaaaagcaatatccaacaccatccgtcgtcactactcaccccca---aagaacactcctcaaaattaaactctcagtcct 19673281  T
Q  510 gaacaccaaa 519  Q
     |||||||||    
T  19673280 caacaccaaa 19673271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 350
Target Start/End: Complemental strand, 43077355 - 43077307
Alignment:
Q  302 tacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacacc 350  Q
    |||||||||||  |||||||||||||| |||||||||||||||||||||    
T  43077355 tacaaacaaaatacgtcgtatataggcagaacacctgaaaataaacacc 43077307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 336
Target Start/End: Original strand, 21983504 - 21983601
Alignment:
Q  238 cagcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacc 336  Q
    ||||||||| ||||||| || || ||||||||| ||||||||||||||||| |||||  || |||| |||  ||| ||| | |||||||||||||||||    
T  21983504 cagcaaattttattaaa-aatcagatccctgctcaagacgaacagagaccgatgaaatagaaaatataaatgaaaagcgccatatataggcggaacacc 21983601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 357
Target Start/End: Original strand, 39420726 - 39420784
Alignment:
Q  299 gaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa 357  Q
    ||||| ||| |||||| ||||||||||||||||||||| |||||| |||||| ||||||    
T  39420726 gaatataaataaaaggtgtcgtatataggcggaacacccgaaaatgaacaccataaaaa 39420784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 340
Target Start/End: Complemental strand, 16502123 - 16502053
Alignment:
Q  263 tccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaa 340  Q
    |||||||  ||||||||||||||||||||||        |||||||||||||||  ||||||||||||||||||||||    
T  16502123 tccctgcacaagacgaacagagaccggtgaag-------tacaaacaaaaggcgctgtatataggcggaacacctgaa 16502053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 358
Target Start/End: Complemental strand, 38930200 - 38930120
Alignment:
Q  278 aacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctg-aaaataaacaccctaaaaac 358  Q
    ||||||||||||||||||  | | ||||||| ||||| | |||||||||| |||||||| | |||||||||||| |||||||    
T  38930200 aacagagaccggtgaaacata-agtacaaacgaaaggagccgtatataggtggaacacccgaaaaataaacaccataaaaac 38930120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 238 - 346
Target Start/End: Complemental strand, 12296625 - 12296518
Alignment:
Q  238 cagcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacct 337  Q
    ||||||||| |||| || ||||| ||| ||||| || ||||| |||||||| |||  | |||||||||||| ||| | |||||||| |||| |||||||     
T  12296625 cagcaaattttatttaa-aaccagatctctgctcaaaacgaatagagaccgatgattcagagaatacaaactaaatgtgtcgtatacaggcagaacaccc 12296527  T
Q  338 gaaaataaa 346  Q
     ||||||||    
T  12296526 aaaaataaa 12296518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 302 - 346
Target Start/End: Complemental strand, 35336958 - 35336914
Alignment:
Q  302 tacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaa 346  Q
    ||||||||||||||| ||||||||| ||||||| | |||||||||    
T  35336958 tacaaacaaaaggcgccgtatatagacggaacatccgaaaataaa 35336914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 242 - 385
Target Start/End: Original strand, 42532892 - 42533035
Alignment:
Q  242 aaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaa 341  Q
    ||||| ||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||| ||    
T  42532892 aaattttattagacaaccaaatccctgctcaagacgaacagagaccggtggaactgagaatacaaccaaaaggcgccgtatataggcggaacacctggaa 42532991  T
Q  342 ataaacaccctaaaaacatcattgaggacaacacccacaaaaaa 385  Q
    |||||||||||||||||  | |||| ||||||||||||||||||    
T  42532992 ataaacaccctaaaaactcccttgatgacaacacccacaaaaaa 42533035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 267 - 519
Target Start/End: Original strand, 24324456 - 24324707
Alignment:
Q  267 tgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattga 366  Q
    |||| |||||||| ||||| || ||||| |||||||||||||||||  |||| |||||||  | |||||| |||||||||||| ||||||||| | ||||    
T  24324456 tgctcaagacgaatagagatcgatgaaagtgagaatacaaacaaaaaacgtcatatatagctgaaacacccgaaaataaacactctaaaaacacccttga 24324555  T
Q  367 ggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacg-aaaatgaccactgtataaatgatatccaaccatctatcgtcactact 465  Q
    ||||||||| |||  ||||||| | ||| ||  ||||| ||||||||||||| |||| ||||| ||||  || |||||||||||| | ||||||||||||    
T  24324556 ggacaacactcac-caaaatacacgtcaccacttaaaacagactccttcacgaaaaacgaccattgtaagaacgatatccaacca-ccatcgtcactact 24324653  T
Q  466 cacccccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaa 519  Q
    ||||||     |||||||||||||||| |||||||||| |||||||||||||||    
T  24324654 cacccctaaagaaaaacacccctcaaaataaaactctccgtcctgaacaccaaa 24324707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 242 - 471
Target Start/End: Complemental strand, 33719413 - 33719183
Alignment:
Q  242 aaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaa 341  Q
    ||||| ||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||  | |||||||||||||| | ||||    
T  33719413 aaattttattaaacaaccagatccctgctcaagacgaacagagatcggtgaaactgagaatacaaacaaacggcgctgaatataggcggaacatc-gaaa 33719315  T
Q  342 ataaacaccctaaaaaca-tcattgaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcac-gaaaatgaccactgtataaatg 439  Q
     ||||||||||||||||| ||| ||||||||||||||||  |||||||  |||| |  ||||||  |||||||||||  |||| |||| ||||| |||||    
T  33719314 gtaaacaccctaaaaacactca-tgaggacaacacccac-caaaatacctatcaccgcctaaaaccgactccttcacaaaaaacgacctctgtaaaaatg 33719217  T
Q  440 atatccaac-catct-atcgtcactactcacccc 471  Q
    ||||||||| |  || ||||||||||||||||||    
T  33719216 atatccaacactactcatcgtcactactcacccc 33719183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 241 - 336
Target Start/End: Original strand, 6726051 - 6726146
Alignment:
Q  241 caaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacc 336  Q
    |||||| ||||||||||||| ||| ||||| |||||||||||||| ||||||||||||||||||||||||||  || |||||||||||||||||||    
T  6726051 caaattttattaaacaaccagatctctgctcaagacgaacagagatcggtgaaactgagaatacaaacaaaaaacgccgtatataggcggaacacc 6726146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 272 - 404
Target Start/End: Original strand, 16828763 - 16828894
Alignment:
Q  272 aagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggaca 371  Q
    ||||| |||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| |||| ||| | |  ||| || |    
T  16828763 aagacaaacaaagaccggtgaaactgagaatacaaacaaaatgcgccgtatataggcggaacacccgaaaataaacatcctagaaatacccctgaagaaa 16828862  T
Q  372 acacccacaaaaaatacgcatcatcatctaaaa 404  Q
    ||| ||||  ||||||| |||||||||||||||    
T  16828863 acaaccac-caaaatacacatcatcatctaaaa 16828894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 241 - 472
Target Start/End: Complemental strand, 1321241 - 1321011
Alignment:
Q  241 caaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaa 340  Q
    |||||| ||||||||||||| ||| || || ||||||||| |||| || |||||||||||||||||||  | | || |||||||||||||||| || |||    
T  1321241 caaattttattaaacaaccacatctctactcaagacgaacggagatcgatgaaactgagaatacaaac--acgacgccgtatataggcggaactcccgaa 1321144  T
Q  341 aataaacaccctaaaaacatcattgaggacaacacccacaaaaaatacgcatcatcatctaaaatagactcc-ttcacgaaaatgaccactgtataaatg 439  Q
    ||||||||||||||||||  | |||| |||| || ||||  ||||||| ||||| || |||||| |||| || |||||||||   ||||||||| ||| |    
T  1321143 aataaacaccctaaaaac-cccttgaagacaccatccac-caaaatacacatcaccacctaaaacagacccctttcacgaaagcaaccactgtaaaaacg 1321046  T
Q  440 atatcca--accatctatcgtcactactcaccccc 472  Q
    ||||| |  ||||   |||||||||||||||||||    
T  1321045 atatctaataccactcatcgtcactactcaccccc 1321011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 238 - 345
Target Start/End: Original strand, 28534134 - 28534240
Alignment:
Q  238 cagcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacct 337  Q
    ||||||||| ||||||| |||||||||  |||| |||||||||||||||||||||    ||||||||||| |||||||| |||||||||||||||||||     
T  28534134 cagcaaattttattaaa-aaccaaatctttgctcaagacgaacagagaccggtgatttagagaatacaaataaaaggcgccgtatataggcggaacaccc 28534232  T
Q  338 gaaaataa 345  Q
    ||||||||    
T  28534233 gaaaataa 28534240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 241 - 352
Target Start/End: Complemental strand, 44756016 - 44755906
Alignment:
Q  241 caaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaa 340  Q
    |||||| ||||||||||| | ||||||||| |||||||||  ||| | |||||||| || ||||||||||||||||| ||||||||||| ||||||| ||    
T  44756016 caaattttattaaacaactagatccctgctcaagacgaacgaagatcagtgaaactaagcatacaaacaaaaggcgttgtatataggcgaaacacct-aa 44755918  T
Q  341 aataaacaccct 352  Q
    ||||||||||||    
T  44755917 aataaacaccct 44755906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 238 - 356
Target Start/End: Complemental strand, 3478800 - 3478683
Alignment:
Q  238 cagcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaaca-aaaggcgtcgtatataggcggaacacc 336  Q
    ||||||||| |||| |||||||| ||||||| | ||||| |||||||||||||||||  |||| | ||| |  ||||||| |||||||||||||||||||    
T  3478800 cagcaaattttatttaacaaccagatccctgatcaagacaaacagagaccggtgaaa--gagagtgcaacctgaaaggcgccgtatataggcggaacacc 3478703  T
Q  337 tgaaaataaacaccctaaaa 356  Q
     |||||||||||||||||||    
T  3478702 cgaaaataaacaccctaaaa 3478683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 241 - 357
Target Start/End: Original strand, 6716368 - 6716484
Alignment:
Q  241 caaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaa 340  Q
    |||||| |||| ||| ||||| |||||||| ||||| ||| ||||| | |||||| |||||||||||  ||||| | ||||||||  |||||||||||||    
T  6716368 caaattttatttaaccaccaagtccctgctcaagacaaaccgagacagatgaaacagagaatacaaattaaaggggccgtatataaccggaacacctgaa 6716467  T
Q  341 aataaacaccctaaaaa 357  Q
    |||||||||||||||||    
T  6716468 aataaacaccctaaaaa 6716484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 351
Target Start/End: Complemental strand, 8745571 - 8745469
Alignment:
Q  248 tattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaac 347  Q
    |||||||||| |||||||||  | ||||||||||||||| ||||||||||| |||| |||||| || || ||||||||||||||||||| ||||| ||||    
T  8745571 tattaaacaatcaaatccctattcaagacgaacagagactggtgaaactgaaaatagaaacaagagacgccgtatataggcggaacacccgaaaa-aaac 8745473  T
Q  348 accc 351  Q
    ||||    
T  8745472 accc 8745469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 242 - 336
Target Start/End: Original strand, 48058306 - 48058399
Alignment:
Q  242 aaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacc 336  Q
    ||||| ||||||| ||||| ||| ||||| ||||| |||||||||||||||||  |||||||||||| ||||||||| |||||||||||||||||    
T  48058306 aaattttattaaa-aaccatatctctgctcaagacaaacagagaccggtgaaatagagaatacaaacgaaaggcgtcatatataggcggaacacc 48058399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 272 - 384
Target Start/End: Complemental strand, 16954906 - 16954795
Alignment:
Q  272 aagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggaca 371  Q
    ||||| |||| |||||||||||||||||| |||||| |||||||  ||||||||||||||||| | |||||||||||| ||||||||| |  ||| || |    
T  16954906 aagacaaacaaagaccggtgaaactgaga-tacaaataaaaggcaccgtatataggcggaacatccgaaaataaacacgctaaaaacacccctgaagaaa 16954808  T
Q  372 acacccacaaaaa 384  Q
    ||| |||||||||    
T  16954807 acaaccacaaaaa 16954795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 239 - 351
Target Start/End: Complemental strand, 36674921 - 36674809
Alignment:
Q  239 agcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctg 338  Q
    |||||||  ||||||||||| | || ||  || |||||||||||||| |||||||| ||   |||||||||||||||||||||||||||||||| | | |    
T  36674921 agcaaatattattaaacaactagattccgactcaagacgaacagagatcggtgaaattggagatacaaacaaaaggcgtcgtatataggcggaatatccg 36674822  T
Q  339 aaaataaacaccc 351  Q
    |||||||||||||    
T  36674821 aaaataaacaccc 36674809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 241 - 336
Target Start/End: Original strand, 47456706 - 47456800
Alignment:
Q  241 caaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacc 336  Q
    |||||| ||||||| ||||| ||| ||||| |||||||||||||||||||||||| || ||||||||  |||||||  ||||||||||||||||||    
T  47456706 caaattttattaaa-aaccagatctctgctcaagacgaacagagaccggtgaaacagaaaatacaaatgaaaggcgcagtatataggcggaacacc 47456800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 289 - 374
Target Start/End: Complemental strand, 39013643 - 39013558
Alignment:
Q  289 gtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaaca 374  Q
    |||||||||||||||||||||| || ||| |||||||| ||||| |||| |||||||||||||| |||||| |  |||||||||||    
T  39013643 gtgaaactgagaatacaaacaagagacgttgtatatagacggaatacctaaaaataaacaccctgaaaacaactatgaggacaaca 39013558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 298 - 335
Target Start/End: Original strand, 22567781 - 22567818
Alignment:
Q  298 agaatacaaacaaaaggcgtcgtatataggcggaacac 335  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  22567781 agaatacaaacaaaaggcgccgtatataggcggaacac 22567818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 455 - 519
Target Start/End: Complemental strand, 8745388 - 8745324
Alignment:
Q  455 tcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaa 519  Q
    ||||||||||||||||||    |||||||||||||||| | |||||| ||||| |||||||||||    
T  8745388 tcgtcactactcacccccaaagaaaaacacccctcaaaattaaactcccagtcttgaacaccaaa 8745324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 347
Target Start/End: Complemental strand, 13312227 - 13312180
Alignment:
Q  300 aatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaac 347  Q
    ||||||||| |||||| | |||||||||||||||||| ||||||||||    
T  13312227 aatacaaactaaaggctttgtatataggcggaacacccgaaaataaac 13312180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 241 - 357
Target Start/End: Complemental strand, 25438807 - 25438690
Alignment:
Q  241 caaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaa-ctgagaatacaaacaaaaggcgtcgtatataggcggaacacctga 339  Q
    |||||| ||||||| ||||| |||| | || |||||||||||| |||| ||||| | | |||||||||| | | ||  ||||||||||||||||||| ||    
T  25438807 caaattttattaaa-aaccagatccatactcaagacgaacagataccgatgaaaacagcgaatacaaacgatatgccccgtatataggcggaacacccga 25438709  T
Q  340 aaa-taaacaccctaaaaa 357  Q
    ||| |||||||| ||||||    
T  25438708 aaagtaaacaccataaaaa 25438690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 256 - 332
Target Start/End: Original strand, 9427725 - 9427801
Alignment:
Q  256 aaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaa 332  Q
    ||||| |||| |||| |||||||||||||| ||||||    |||||||||||| ||| ||  |||||||||||||||    
T  9427725 aaccagatccttgctcaagacgaacagagatcggtgatttagagaatacaaactaaatgcaacgtatataggcggaa 9427801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 350
Target Start/End: Complemental strand, 38485989 - 38485906
Alignment:
Q  266 ctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacacc 350  Q
    ||||| ||||||||||||||| ||||  || || | || ||||  ||||||||||| |||||||||||||| ||||| |||||||    
T  38485989 ctgctcaagacgaacagagactggtgttacagaaagtataaac-taaggcgtcgtaaataggcggaacacccgaaaacaaacacc 38485906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 248 - 472
Target Start/End: Complemental strand, 37149 - 36926
Alignment:
Q  248 tattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaac 347  Q
    ||||||||||||  ||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||  |||||||||||||||| | ||||||||||    
T  37149 tattaaacaacctgatccctgctcaagacgaacagagaccggtgaaactgataatacaaacaaaagacgctgtatataggcggaacatccgaaaataaac 37050  T
Q  348 accct-aaaaacatcattgaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatcca 446  Q
    ||| | ||||||| |  ||||||| ||||||| | ||||||| | ||| || |||||| ||||||||||||| |||  ||||||||| ||| || |||||    
T  37049 accataaaaaacacccatgaggaccacaccca-acaaaatacacgtcaccacctaaaacagactccttcacg-aaaccaccactgtaaaaacgacatcca 36952  T
Q  447 accatctatcgtcactactcaccccc 472  Q
    |||||| | |||||||||||||||||    
T  36951 accatccaccgtcactactcaccccc 36926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 238 - 384
Target Start/End: Complemental strand, 27102634 - 27102489
Alignment:
Q  238 cagcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacct 337  Q
    ||||||||| ||||||||||||| ||| ||| | |||||||||| |||| |||||| |||||||||||||||||||| | |||||||||||||||||||     
T  27102634 cagcaaattttattaaacaaccagatctctgttcaagacgaacaaagactggtgaacctgagaatacaaacaaaaggtgccgtatataggcggaacaccc 27102535  T
Q  338 gaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaa 384  Q
    |||||||||||||||||||||| || |||||||||||||||| ||||    
T  27102534 gaaaataaacaccctaaaaacacca-tgaggacaacacccaccaaaa 27102489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 241 - 359
Target Start/End: Original strand, 9312972 - 9313090
Alignment:
Q  241 caaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaa 340  Q
    |||||| ||||||||||| | ||| ||||| ||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||| |||    
T  9312972 caaattttattaaacaacgagatctctgctcaagacgaacagagaccggtgaaacttataatacaatcaaaaggcgtcgtatataggcggaacacccgaa 9313071  T
Q  341 aataaacaccctaaaaaca 359  Q
    |||||||||||||||||||    
T  9313072 aataaacaccctaaaaaca 9313090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 265 - 433
Target Start/End: Complemental strand, 34775297 - 34775129
Alignment:
Q  265 cctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccct-aaaaacatcat 363  Q
    |||||| |||||||||| |||||| | || |||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||| | ||||| | ||     
T  34775297 cctgctcaagacgaacaaagaccgataaagctgagaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccttaaaaaataccaa 34775198  T
Q  364 tgaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgta 433  Q
    ||||||||||||||||  ||||||| | |||||| |||||| ||||||||||||||||| ||| ||||||    
T  34775197 tgaggacaacacccac-caaaatacacgtcatcacctaaaacagactccttcacgaaaacgacaactgta 34775129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 240 - 429
Target Start/End: Complemental strand, 46768627 - 46768437
Alignment:
Q  240 gcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtc-gtatataggcggaacacctg 338  Q
    ||||||| |||||||||||||||| | |||| ||||||||||||||  ||||||| |||| |||||||||||||||| | |||| ||||||||||||| |    
T  46768627 gcaaattttattaaacaaccaaattcttgctcaagacgaacagagattggtgaaattgagcatacaaacaaaaggcgcccgtatgtaggcggaacacccg 46768528  T
Q  339 aaaataaacaccctaaaaa-catcattgaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccac 429  Q
    ||||||||||||||||||| || |   ||||||||||||||| |||| | | | ||| || |||||| ||||||||||||||||| ||||||    
T  46768527 aaaataaacaccctaaaaaacacccccgaggacaacacccaccaaaatt-cacgtcaccacctaaaacagactccttcacgaaaacgaccac 46768437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 241 - 507
Target Start/End: Original strand, 11439652 - 11439919
Alignment:
Q  241 caaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaa 340  Q
    |||||| ||||||||||||| ||| ||||| |||||||||| ||| |||||||| ||||||||||||||||||||| | ||||||| ||||||| | |||    
T  11439652 caaattttattaaacaaccagatctctgctcaagacgaacaaagatcggtgaaaatgagaatacaaacaaaaggcgacatatatagacggaacatccgaa 11439751  T
Q  341 aataaacaccctaaaaacatcattgaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatga 440  Q
    |||||||||||||||| |  |  ||| ||||||| ||||  ||||||| | ||| || |||||| |||  |||||||||||   ||||| ||| ||||||    
T  11439752 aataaacaccctaaaatc-cccctgaagacaacatccac-caaaatacacgtcaccacctaaaacagatcccttcacgaaagcaaccaccgtaaaaatga 11439849  T
Q  441 tatcca--accatctatcgtcactact-cacccccttctaaaaacacccctcaaagtaaaactctcagtc 507  Q
    ||||||  ||||  ||||||||||||| |||||||    |||||||||||||| | | |||||| |||||    
T  11439850 tatccaacaccacttatcgtcactactccacccccaaagaaaaacacccctcagaattaaactcccagtc 11439919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 241 - 470
Target Start/End: Original strand, 31290653 - 31290880
Alignment:
Q  241 caaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaa 340  Q
    ||||| |||||||||||||| |||  | || || |||||||||||| ||||| ||||||||||||||||| ||||    ||| ||| ||||||||| |||    
T  31290653 caaatactattaaacaaccagatctttactcaaaacgaacagagactggtgagactgagaatacaaacaagaggcactatatgtagacggaacacccgaa 31290752  T
Q  341 aataaacaccctaaaaacatcattgaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatga 440  Q
    |||||||||| |||||||| |  |||||||||  ||  |   | |||| ||||| || |||||  |||||||||| |||||| |||||||||| ||||||    
T  31290753 aataaacaccataaaaacacccctgaggacaattcc--cttcatatacacatcaccacctaaatcagactccttcgcgaaaacgaccactgtaaaaatga 31290850  T
Q  441 tatccaaccatctatcgtcactactcaccc 470  Q
    || ||||||||| |||||||||||||||||    
T  31290851 tagccaaccatccatcgtcactactcaccc 31290880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 238 - 359
Target Start/End: Complemental strand, 4431127 - 4431006
Alignment:
Q  238 cagcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggc-ggaacacc 336  Q
    ||||||||| |||||||||| || ||| ||||| |||||||| |||||||||||||| ||||||||||||||||||||| |||||| |||| ||||||||    
T  4431127 cagcaaattttattaaacaaacatatctctgctcaagacgaatagagaccggtgaaattgagaatacaaacaaaaggcgccgtataaaggcgggaacacc 4431028  T
Q  337 tgaaaataaacaccctaaaaaca 359  Q
    | ||||| |||||||||||||||    
T  4431027 taaaaat-aacaccctaaaaaca 4431006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 238 - 472
Target Start/End: Complemental strand, 32882815 - 32882583
Alignment:
Q  238 cagcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacct 337  Q
    ||||||||| |||||||||| || ||||||||| ||||||||||||   | | ||| | || ||||||||| ||||||| ||||||||||| |||||||     
T  32882815 cagcaaattttattaaacaatcacatccctgctcaagacgaacaga---ctg-gaatcagaaaatacaaactaaaggcgccgtatataggcagaacaccc 32882720  T
Q  338 gaaaataaacaccctaaaa-acatcattgaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataa 436  Q
    ||||||||||||||||||| ||| |   |||||||||||||||  ||||||  ||||| |  ||||||  |||||||||||||||| || ||||||| |     
T  32882719 gaaaataaacaccctaaaagacacccccgaggacaacacccac-caaaatatacatcaccgcctaaaactgactccttcacgaaaacgagcactgtaaac 32882621  T
Q  437 atgatatcca--accatctatcgtcactactcaccccc 472  Q
    | ||||||||  |||| | |||||||||||||||||||    
T  32882620 acgatatccaacaccacccatcgtcactactcaccccc 32882583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 253 - 509
Target Start/End: Original strand, 10785105 - 10785359
Alignment:
Q  253 aacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccct 352  Q
    |||||||| ||||||||| |||||||| |||||| ||| ||||||||||||||||| |||  || |||| | || |||||||||  || ||||||||| |    
T  10785105 aacaaccagatccctgctcaagacgaatagagacgggtaaaactgagaatacaaactaaaaacgccgtacaaagtcggaacacccaaatataaacacctt 10785204  T
Q  353 -aaaaacatcattgaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccat 451  Q
     ||||||| | ||||||||||||||||   |||||||   | ||||  ||||| ||||||||||||||||| |||  ||| | ||| ||||||||||||     
T  10785205 aaaaaacacccttgaggacaacaccca-tcaaaatacatgttatcacttaaaacagactccttcacgaaaacgacatctgaaaaaacgatatccaaccac 10785303  T
Q  452 ctatcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcagtcct 509  Q
    | |||||||||||||| |||   | | ||||||||||||||   ||||||||||||||    
T  10785304 ccatcgtcactactcatccc--gcaagaaacacccctcaaaaataaactctcagtcct 10785359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 238 - 352
Target Start/End: Original strand, 376436 - 376549
Alignment:
Q  238 cagcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacct 337  Q
    ||||||||| |||||| || |||  |||||||| ||||||||||||||| | |||||| |||||||||||  ||||||| ||||||||||| ||||||||    
T  376436 cagcaaattttattaacca-ccacgtccctgctcaagacgaacagagacggatgaaacagagaatacaaagtaaaggcgccgtatataggcagaacacct 376534  T
Q  338 gaaaataaacaccct 352  Q
    |||||||||||||||    
T  376535 gaaaataaacaccct 376549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 253 - 384
Target Start/End: Complemental strand, 52278717 - 52278589
Alignment:
Q  253 aacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccct 352  Q
    |||||||| ||||||||| ||||||||||||||| | |||||| |||||||||| | || |||| | ||||||||||||||||||||||||||||||| |    
T  52278717 aacaaccagatccctgctcaagacgaacagagactg-tgaaacagagaatacaagctaa-ggcgccatatataggcggaacacctgaaaataaacacctt 52278620  T
Q  353 aaaaacatcattgaggacaacacccacaaaaa 384  Q
    ||| ||| ||  ||||||||||||||| ||||    
T  52278619 aaagacacca-cgaggacaacacccaccaaaa 52278589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 238 - 315
Target Start/End: Original strand, 7451890 - 7451967
Alignment:
Q  238 cagcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggc 315  Q
    ||||||||  ||||||||||| | ||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  7451890 cagcaaatattattaaacaactagatctctgctcaagacgaacagagaccggtgaaactgagaatacaaacaagaggc 7451967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 241 - 356
Target Start/End: Complemental strand, 9557357 - 9557241
Alignment:
Q  241 caaattctattaaacaaccaaatccctgctaaagacgaa-cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctga 339  Q
    |||||| | ||||||||||| ||| ||||| |||||||| |||||||||||||| ||||||||||||| ||||  | |||||||||  || |||||| ||    
T  9557357 caaattttgttaaacaaccagatctctgctcaagacgaaacagagaccggtgaatctgagaatacaaataaaaaacatcgtatataaacgaaacacccga 9557258  T
Q  340 aaataaacaccctaaaa 356  Q
    ||||||||||| |||||    
T  9557257 aaataaacaccttaaaa 9557241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 248 - 356
Target Start/End: Complemental strand, 27905873 - 27905766
Alignment:
Q  248 tattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaac 347  Q
    ||||||||||||| ||||||||| |||| ||| ||||||||||||| | |||| ||||||| | |||||||||||||||| |||||| |  |||||||||    
T  27905873 tattaaacaaccagatccctgctcaagaagaatagagaccggtgaatcagagactacaaactagaggcgtcgtatataggtggaaca-caaaaaataaac 27905775  T
Q  348 accctaaaa 356  Q
    ||| |||||    
T  27905774 accataaaa 27905766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 267 - 347
Target Start/End: Complemental strand, 37200565 - 37200485
Alignment:
Q  267 tgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaac 347  Q
    |||| ||||||||||||||||||||| || |||||||||||| |||| | |||||||||||||||||| | ||||||||||    
T  37200565 tgctcaagacgaacagagaccggtgataccgagaatacaaactaaagacatcgtatataggcggaacatccgaaaataaac 37200485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 288 - 350
Target Start/End: Original strand, 32863225 - 32863287
Alignment:
Q  288 ggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacacc 350  Q
    ||||||| ||||||||||||| ||| | |||||||||||||||||||||||||||||||||||    
T  32863225 ggtgaaaatgagaatacaaactaaatgtgtcgtatataggcggaacacctgaaaataaacacc 32863287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 256 - 345
Target Start/End: Complemental strand, 17034028 - 17033939
Alignment:
Q  256 aaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataa 345  Q
    |||||||||  |||| |||| ||||| ||||||||||  | || |||||||||||||||||||||||||| |||||||||| ||||||||    
T  17034028 aaccaaatctatgctcaagatgaacatagaccggtgattcagataatacaaacaaaaggcgtcgtatataagcggaacacccgaaaataa 17033939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 265 - 348
Target Start/End: Original strand, 41126107 - 41126190
Alignment:
Q  265 cctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaaca 348  Q
    |||||| ||||||||||||||||| |||  | |||||||||||| |||||| |||||||||||  ||||||| |||||||||||    
T  41126107 cctgctcaagacgaacagagaccgatgattcagagaatacaaactaaaggcatcgtatataggtagaacacccgaaaataaaca 41126190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 356
Target Start/End: Original strand, 38544379 - 38544463
Alignment:
Q  272 aagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa 356  Q
    |||||||||| ||| | ||||  | |||||||||||| |||| ||||||||||| | |||||||| ||||||||||||| |||||    
T  38544379 aagacgaacaaagatccgtgattcagagaatacaaactaaagacgtcgtatatatgtggaacacccgaaaataaacaccataaaa 38544463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 346
Target Start/End: Complemental strand, 46603789 - 46603705
Alignment:
Q  262 atccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaa 346  Q
    |||||| || |||||||| | |||||||||   | || |||||||||||||| ||| |||||||||||||||||| |||||||||    
T  46603789 atccctactcaagacgaataaagaccggtggttcagataatacaaacaaaagacgttgtatataggcggaacacccgaaaataaa 46603705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 357
Target Start/End: Complemental strand, 49820608 - 49820488
Alignment:
Q  238 cagcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaaca-cc 336  Q
    ||||||||| |||| ||||| |  ||| ||||| |||||  | ||||| ||||||| | |||||||||||| |||| |||| ||| ||||||||||| ||    
T  49820608 cagcaaattttatttaacaatctgatctctgctcaagacagatagagatcggtgaatcagagaatacaaaccaaagacgtcatatgtaggcggaacaccc 49820509  T
Q  337 tgaaaataaacaccctaaaaa 357  Q
     ||||||||||||| ||||||    
T  49820508 ggaaaataaacaccataaaaa 49820488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 350
Target Start/End: Original strand, 50588906 - 50589014
Alignment:
Q  238 cagcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacct 337  Q
    ||||||||| ||||||| ||| | ||| ||||| |||||||| | ||| |||||||||     |||||||| ||||||| ||||||||||||||||||||    
T  50588906 cagcaaattttattaaa-aactagatctctgctcaagacgaataaagatcggtgaaacg----atacaaacgaaaggcgccgtatataggcggaacacct 50589000  T
Q  338 gaa-aataaacacc 350  Q
    ||| ||||||||||    
T  50589001 gaagaataaacacc 50589014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 372
Target Start/End: Complemental strand, 16149155 - 16149093
Alignment:
Q  311 aaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa-acatcattgaggacaa 372  Q
    |||||| ||||||||||||||||||  ||||||||||||||||||| ||| | ||||||||||    
T  16149155 aaggcgccgtatataggcggaacacgcgaaaataaacaccctaaaagacaaccttgaggacaa 16149093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 238 - 350
Target Start/End: Complemental strand, 19599101 - 19598990
Alignment:
Q  238 cagcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacct 337  Q
    ||||||| | ||||||| ||||| ||| ||||| |||||||||| ||||   | |||| | ||||||||  |||||||| ||||||||||||||||||||    
T  19599101 cagcaaaatttattaaa-aaccagatctctgctcaagacgaacaaagactaataaaacgg-gaatacaataaaaaggcgccgtatataggcggaacacct 19599004  T
Q  338 gaaaa-taaacacc 350  Q
    ||||| ||||||||    
T  19599003 gaaaagtaaacacc 19598990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 336
Target Start/End: Original strand, 26602479 - 26602550
Alignment:
Q  265 cctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacc 336  Q
    |||||| ||||| |||||||||||||||  | ||||| |||||||||| | || |||||||| |||||||||    
T  26602479 cctgctcaagaccaacagagaccggtgattcggagaaaacaaacaaaaagtgttgtatatagacggaacacc 26602550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 348
Target Start/End: Complemental strand, 42374573 - 42374526
Alignment:
Q  301 atacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaaca 348  Q
    ||||||||||| |||| | ||||||||||||||||| |||||||||||    
T  42374573 atacaaacaaagggcgccatatataggcggaacacccgaaaataaaca 42374526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 267 - 357
Target Start/End: Original strand, 38546841 - 38546931
Alignment:
Q  267 tgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa 357  Q
    |||| |||||||||| ||| | ||||  | |||| ||||||| ||| | ||||||||||||||||||| | ||||||||| ||| ||||||    
T  38546841 tgctcaagacgaacaaagatcagtgattcagagagtacaaactaaatgtgtcgtatataggcggaacatccgaaaataaaaaccataaaaa 38546931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 468
Target Start/End: Complemental strand, 16577560 - 16577480
Alignment:
Q  390 catcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatcc--aaccatctatcgtcactactcac 468  Q
    |||||||| |||||| |||||| |||||||||| |||||||  | |||||||||||  ||||||  |||||| ||||||||    
T  16577560 catcatcacctaaaacagactctttcacgaaaacgaccactcaaaaaatgatatccataaccattcatcgtccctactcac 16577480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 350
Target Start/End: Complemental strand, 4652160 - 4652128
Alignment:
Q  318 cgtatataggcggaacacctgaaaataaacacc 350  Q
    ||||||||||||||||||||||||| |||||||    
T  4652160 cgtatataggcggaacacctgaaaacaaacacc 4652128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 300 - 348
Target Start/End: Original strand, 18844971 - 18845019
Alignment:
Q  300 aatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaaca 348  Q
    ||||||||||||||||||||| ||||| ||||| | | |||||||||||    
T  18844971 aatacaaacaaaaggcgtcgtgtatagacggaatatccgaaaataaaca 18845019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 3e-37; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 238 - 448
Target Start/End: Original strand, 17656365 - 17656575
Alignment:
Q  238 cagcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacct 337  Q
    ||||||||| |||||||||| ||  |||||||| | ||  || |||||||||||||| |||  ||| |||||||||||||||||||||| |||||||||     
T  17656365 cagcaaattttattaaacaatcaggtccctgctcatgagcaatagagaccggtgaaattgaacatataaacaaaaggcgtcgtatatagacggaacaccc 17656464  T
Q  338 gaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacg-aaaatgaccactgtataa 436  Q
    |||||| ||||||||||||||| | |||||||||||||||||  ||||| | | ||| ||||||||| ||||||||||| | |||| |||||||| | ||    
T  17656465 gaaaattaacaccctaaaaacacccttgaggacaacacccac-caaaattcacgtcaccatctaaaacagactccttcaagaaaaacgaccactgcaaaa 17656563  T
Q  437 atgatatccaac 448  Q
    | ||||||||||    
T  17656564 acgatatccaac 17656575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 290 - 519
Target Start/End: Original strand, 10248246 - 10248477
Alignment:
Q  290 tgaaactgagaatacaaacaaaaggcgtcgtatataggcggaaca-cctgaaaataaacaccct-aaaaacatcattgaggacaacacccacaaaaaata 387  Q
    ||||||||||||||||| | ||||||||||||||||||||||||| ||| |||| ||||||| | ||||||| | ||||||||||||||| |  ||||||    
T  10248246 tgaaactgagaatacaacctaaaggcgtcgtatataggcggaacaccctaaaaaaaaacaccttaaaaaacacccttgaggacaacacccgc-caaaata 10248344  T
Q  388 cgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaac--catctatcgtcactactcacccccttcta-aaaacac 484  Q
    | | ||| || |||||| | ||||||||||||||| |||||||||| ||| || |||| ||  || | |||||||||||||||||||  | |  ||||||    
T  10248345 cacgtcaccacctaaaacaaactccttcacgaaaacgaccactgtaaaaacgacatcccacaacacccatcgtcactactcaccccc--caacgaaacac 10248442  T
Q  485 ccctcaaagtaaaactctcagtcctgaacaccaaa 519  Q
    || ||||| | ||||||| |||||| |||||||||    
T  10248443 ccgtcaaaattaaactctaagtcctcaacaccaaa 10248477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 242 - 356
Target Start/End: Original strand, 12197708 - 12197822
Alignment:
Q  242 aaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaa 341  Q
    ||||| |||| |||||| | |||  |||| |||||||| ||||| ||||||| | |||||||||||| ||||||||||| ||||||||||||||  ||||    
T  12197708 aaattttatttaacaacgagatctatgctcaagacgaatagagatcggtgaatcagagaatacaaactaaaggcgtcgtctataggcggaacacgggaaa 12197807  T
Q  342 ataaacaccctaaaa 356  Q
    |||||||||||||||    
T  12197808 ataaacaccctaaaa 12197822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 242 - 356
Target Start/End: Original strand, 12442136 - 12442250
Alignment:
Q  242 aaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaa 341  Q
    ||||| |||| |||||| | |||  |||| |||||||| ||||| ||||||| | |||||||||||| ||||||||||| ||||||||||||||  ||||    
T  12442136 aaattttatttaacaacgagatctatgctcaagacgaatagagatcggtgaatcagagaatacaaactaaaggcgtcgtctataggcggaacacgggaaa 12442235  T
Q  342 ataaacaccctaaaa 356  Q
    |||||||||||||||    
T  12442236 ataaacaccctaaaa 12442250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 238 - 330
Target Start/End: Original strand, 8843743 - 8843833
Alignment:
Q  238 cagcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcgg 330  Q
    ||||||||| ||||||| || ||||||||| || |||||||||||||||||||||||| || ||||||||| ||| ||| |||||||||||||    
T  8843743 cagcaaattttattaaa-aatcaaatcccttctcaagacgaacagagaccggtgaaacaga-aatacaaacgaaatgcgccgtatataggcgg 8843833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 241 - 357
Target Start/End: Original strand, 8862256 - 8862370
Alignment:
Q  241 caaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaaca-cctga 339  Q
    |||||| || ||| |||||| |||||| || |||||||||| ||| |||||||  ||||| ||||||||||||||| ||||||||| ||||||| ||  |    
T  8862256 caaattttactaagcaaccagatccctactcaagacgaaca-agatcggtgaa--tgagagtacaaacaaaaggcgccgtatatagacggaacatccgaa 8862352  T
Q  340 aaataaacaccctaaaaa 357  Q
    ||||||||||| ||||||    
T  8862353 aaataaacaccataaaaa 8862370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 241 - 336
Target Start/End: Original strand, 25184754 - 25184848
Alignment:
Q  241 caaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacc 336  Q
    |||||| ||||||| |||||||||||| || ||||| || ||||||||||||  | |||| ||||||| |||  ||||||||||||| ||||||||    
T  25184754 caaattttattaaa-aaccaaatccctactcaagacaaaaagagaccggtgattcagagagtacaaactaaaaacgtcgtatataggtggaacacc 25184848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 318 - 357
Target Start/End: Original strand, 2273760 - 2273799
Alignment:
Q  318 cgtatataggcggaacacctgaaaataaacaccctaaaaa 357  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  2273760 cgtataaaagcggaacacctgaaaataaacaccctaaaaa 2273799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 297 - 347
Target Start/End: Original strand, 9831691 - 9831741
Alignment:
Q  297 gagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaac 347  Q
    |||||||||||| |||| |||||||||||||| || |||| ||||||||||    
T  9831691 gagaatacaaactaaagacgtcgtatataggccgaccacccgaaaataaac 9831741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 334
Target Start/End: Original strand, 43312312 - 43312378
Alignment:
Q  266 ctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaaca 334  Q
    ||||| |||||||| |||||||| ||||||||||||| |  || ||||||| | |||||||||||||||    
T  43312312 ctgctcaagacgaatagagaccgatgaaactgagaatgc--actaaaggcgccatatataggcggaaca 43312378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 3e-37; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 241 - 356
Target Start/End: Original strand, 20701430 - 20701544
Alignment:
Q  241 caaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaa 340  Q
    |||||| |||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||| |    
T  20701430 caaattttattaaacaaccaaatccct-ctcaagacgaacagagatcggtgaaactgagaatacaaacaaaaggcgctgtatataggcggaacacctgga 20701528  T
Q  341 aataaacaccctaaaa 356  Q
    ||||||||| ||||||    
T  20701529 aataaacacactaaaa 20701544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 241 - 359
Target Start/End: Original strand, 3880244 - 3880362
Alignment:
Q  241 caaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaa 340  Q
    |||||| |||||||||| || ||||||||| ||||||||||||||||||||||||||| |||||||||||||||   |||||||| ||||||||||  ||    
T  3880244 caaattttattaaacaatcagatccctgctcaagacgaacagagaccggtgaaactgaaaatacaaacaaaaggttccgtatataagcggaacaccaaaa 3880343  T
Q  341 aataaacaccctaaaaaca 359  Q
    |||||||||||||||||||    
T  3880344 aataaacaccctaaaaaca 3880362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 242 - 422
Target Start/End: Original strand, 15120235 - 15120415
Alignment:
Q  242 aaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaa 341  Q
    ||||| |||| |||||||  ||||||| | ||| | ||||||||||||| ||||||||||||||||| |||| || ||||| ||||| ||||| |||| |    
T  15120235 aaattttatttaacaaccggatccctggtcaagtcaaacagagaccggtaaaactgagaatacaaactaaagacgacgtatgtaggcagaacatctgaca 15120334  T
Q  342 ataaacaccct-aaaaacatcattgaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaa 422  Q
    ||||||||||| |||||||||  ||||||||||| ||||  ||||||| ||||| || |||||| |||||| ||||| ||||    
T  15120335 ataaacaccctaaaaaacatccatgaggacaacatccac-caaaatacacatcaccacctaaaacagactcattcacaaaaa 15120415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 239 - 384
Target Start/End: Complemental strand, 6860484 - 6860338
Alignment:
Q  239 agcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatata--ggcggaacacc 336  Q
    |||| ||| ||||||||||| | ||||||||| |||| ||| | ||| |||||||||| |||||||||||||||| || ||||||||  |||||||||||    
T  6860484 agcatattttattaaacaactagatccctgctcaagatgaatatagatcggtgaaactaagaatacaaacaaaagacgccgtatataggggcggaacacc 6860385  T
Q  337 tgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaa 384  Q
      ||||||||||||||||||||| |  || ||||||| ||||||||||    
T  6860384 caaaaataaacaccctaaaaacacctatgcggacaac-cccacaaaaa 6860338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 240 - 348
Target Start/End: Original strand, 17278093 - 17278201
Alignment:
Q  240 gcaaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctga 339  Q
    ||||||| |||| || ||||| ||| ||||| |||| ||||||||||||||||  | |||||||||| | ||||||||||||||||||||||||||| ||    
T  17278093 gcaaattttatttaaaaaccagatcgctgcttaagatgaacagagaccggtgattcagagaatacaatctaaaggcgtcgtatataggcggaacacccga 17278192  T
Q  340 aaataaaca 348  Q
    |||||||||    
T  17278193 aaataaaca 17278201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 263 - 334
Target Start/End: Complemental strand, 13423789 - 13423718
Alignment:
Q  263 tccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaaca 334  Q
    ||||| || ||||||||||||||||  ||||||||||||||||| | |||||||||||||||||||||||||    
T  13423789 tccctcctcaagacgaacagagacctttgaaactgagaatacaatctaaaggcgtcgtatataggcggaaca 13423718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 26534424 - 26534464
Alignment:
Q  302 tacaaacaaaaggcgtcgtatataggcggaacacctgaaaa 342  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26534424 tacaaacaaaaggcgtcgtatataggcggaacacctgaaaa 26534464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 419 - 519
Target Start/End: Original strand, 3880405 - 3880508
Alignment:
Q  419 aaaatgaccactgtataaatgatatccaac--catctatcgtcactactcaccccct-tctaaaaacacccctcaaagtaaaactctcagtcctgaacac 515  Q
    |||| ||||||| || ||| ||||||||||  ||||| |||||||||||||||||||    |||||||||||||||| | ||||||  |||| |||||||    
T  3880405 aaaacgaccactataaaaacgatatccaacaccatctgtcgtcactactcaccccctaagaaaaaacacccctcaaaattaaactccaagtcttgaacac 3880504  T
Q  516 caaa 519  Q
    ||||    
T  3880505 caaa 3880508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 350
Target Start/End: Complemental strand, 9224380 - 9224273
Alignment:
Q  242 aaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaa 341  Q
    ||||| ||||||| ||| |||||||||   ||||||||||||||| ||| | |  || | ||||| ||||||| |||||||||||  |||||||| ||||    
T  9224380 aaattttattaaa-aactaaatccctgtacaagacgaacagagactggtaataaagaaagtacaaccaaaaggtgtcgtatatagaaggaacacccgaaa 9224282  T
Q  342 ataaacacc 350  Q
    |||||||||    
T  9224281 ataaacacc 9224273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 262 - 519
Target Start/End: Complemental strand, 58556 - 58298
Alignment:
Q  262 atccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatc 361  Q
    ||||||||| |||||||| ||||||||||||||| || |||| |||||||||||| ||||||||||  |||||||  |||||||| |||||||||||| |    
T  58556 atccctgctcaagacgaaaagagaccggtgaaacagataatagaaacaaaaggcgccgtatataggtagaacacccaaaaataaataccctaaaaacacc 58457  T
Q  362 attgaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatcca--accatctatcgtc 459  Q
      |||| ||| ||  ||   ||| ||| ||||| || | |||| ||||||||||||||||| ||||| |||| || |||||||||  || | |  |||||    
T  58456 catgagaacacca-tcagccaaagtacacatcaccaccaaaaacagactccttcacgaaaacgaccattgtaaaactgatatccaacactacccgtcgtc 58358  T
Q  460 actactcacccccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaa 519  Q
    ||||||||| |||    || ||||| ||||||| | ||||||||||||| ||||||||||    
T  58357 actactcacacccaaagaacaacactcctcaaaattaaactctcagtcccgaacaccaaa 58298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 241 - 351
Target Start/End: Original strand, 41802 - 41911
Alignment:
Q  241 caaattctattaaacaaccaaatccctgctaaagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaa 340  Q
    |||||| |||| ||||| |||||| ||| | |||||||| |||| ||||||||| ||||||||||||  |||||||||||| | ||||| ||||||  |     
T  41802 caaattttatttaacaatcaaatctctgttcaagacgaa-agaggccggtgaaattgagaatacaaattaaaggcgtcgtacaaaggcgaaacacccaag 41900  T
Q  341 aataaacaccc 351  Q
    |||||||||||    
T  41901 aataaacaccc 41911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 272 - 356
Target Start/End: Original strand, 658 - 742
Alignment:
Q  272 aagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa 356  Q
    |||||||||| ||| | ||||  | |||||||||||| |||| ||||||||||| | |||||||| ||||||||||||| |||||    
T  658 aagacgaacaaagatccgtgattcagagaatacaaactaaagacgtcgtatatatgtggaacacccgaaaataaacaccataaaa 742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1384 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 305 - 448
Target Start/End: Original strand, 1347 - 1494
Alignment:
Q  305 aaacaaaaggcgtcgtatataggcggaacacctg-aaaataaacaccct-aaaaacatcattgaggacaac---acccacaaaaaatacgcatcatcatc 399  Q
    |||||||||||| ||||||||||| ||||||| | |||||||||||| | ||||||| |  | ||||||||   |||||| |||||||| | ||| || |    
T  1347 aaacaaaaggcgccgtatataggcagaacacccgaaaaataaacaccataaaaaacacccctaaggacaacaaaacccac-aaaaatacacgtcaccacc 1445  T
Q  400 taaaatagactccttcacgaaaatgaccactgtataaatgatatccaac 448  Q
    |||||  ||||||| ||||| ||  ||||||||| ||| ||||||||||    
T  1446 taaaactgactcctacacgagaacaaccactgtaaaaacgatatccaac 1494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1252 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1252
Description:

Target: scaffold1252; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 335
Target Start/End: Complemental strand, 874 - 816
Alignment:
Q  277 gaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacac 335  Q
    ||||||| ||||||||||| ||||||||||||  ||||||  |||| ||||||||||||    
T  874 gaacagaaaccggtgaaacagagaatacaaacggaaggcgctgtatttaggcggaacac 816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 336
Target Start/End: Complemental strand, 6970 - 6906
Alignment:
Q  272 aagacgaacagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacc 336  Q
    |||||||||| |||||| |||||| || | ||||||  ||||||| ||||||| |||||||||||    
T  6970 aagacgaacaaagaccgatgaaacagatattacaaaagaaaggcgccgtatattggcggaacacc 6906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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