View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9687_high_5 (Length: 328)
Name: NF9687_high_5
Description: NF9687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9687_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 43290371 - 43290058
Alignment:
| Q |
1 |
gttacatcatcgcatacaccctcctccgactccaacgcttgaataaacacatcaatcgcttcaaccgggcaattattttgaacatacgcaacaatcatag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43290371 |
gttacatcatcgcatacaccctcctccgactccaacgcttgaataaacacatcaatcgcttcaaccgggcaattattttgaacatacgcaacaatcatag |
43290272 |
T |
|
| Q |
101 |
tattccaaatctcagtatttttattcaaacatcgatcaaaaaccattcgcgcataatccatacaaccaacatcagaaaacataagtatcgcagagcttac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43290271 |
tattccaaatctcagtatttttattcaaacatcgatcaaaaaccattcgcgcataatccatacaaccaacatcagaaaacataagtatcgcagagcttac |
43290172 |
T |
|
| Q |
201 |
aacaaacacatcactaacatactgatcaccaaatttcctcataaacccataaaacatcttcacagttctagaatcacccaatttcgacaaagcaggaaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43290171 |
aacaaacacatcactaacatactgatcaccaaatttcctcataaacccataaaacatcttcacagttctagaatcacccaatttcgacaaagcaggaaaa |
43290072 |
T |
|
| Q |
301 |
agattcacaaaagt |
314 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
43290071 |
agattcacaaaagt |
43290058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University