View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9687_low_12 (Length: 290)
Name: NF9687_low_12
Description: NF9687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9687_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 39032970 - 39033232
Alignment:
| Q |
1 |
ttatacaagcaaggatgagtgttgcatgcaacccaatacaaactaaaaatgattaaataaataaaccaataactcgtatccccaatcgtattgttagtgt |
100 |
Q |
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| T |
39032970 |
ttatacaagcaaggatgagtgttgcatgcaacccaatacaaactaaaaatgattaaataaataaaccaa---ctcgtatccccaatcgtattgttagtgt |
39033066 |
T |
|
| Q |
101 |
gaacttctgtgttgacataatatttatctttacaatatttatcctattgtaaagaaagggttacaagatttatagttattaatgtttttaatttatctac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
39033067 |
caacttctgtgttgacataatatttatctttacaatatttatcctattgtaaagaaagggttacaagctttatag---ttaatgtttttaatttatctac |
39033163 |
T |
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| Q |
201 |
atatttataaccctttcttaagattagttacgtaagtttcactaatcaacacactgagctgtctcattt |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39033164 |
atatttataaccctttcttaagattagttacgtaagtttcactaatcaacacactgagctgtctcattt |
39033232 |
T |
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