View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9687_low_14 (Length: 272)
Name: NF9687_low_14
Description: NF9687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9687_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 9e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 86 - 260
Target Start/End: Original strand, 55102618 - 55102801
Alignment:
| Q |
86 |
tgatgtcttgatattcgtgatttttctatcgtgtcatatagtactgctgtctgccgttaatcagatatagtgagtcataacaatgtttatataaaagtga |
185 |
Q |
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| T |
55102618 |
tgatttcttgatattcgtgatttttctatcgtgtcatatagtactgctgtctgccgttaatcagatatagtgagtcataacaatgtttatataaaagtgg |
55102717 |
T |
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| Q |
186 |
taattaacacagttaatagaaaacattgatgtgtgcctaataac---------ttaatagaaaatattgtgatttcccttcaaa |
260 |
Q |
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| T |
55102718 |
taattaacacagttaatagaaaacattgatgtgtgcctaataactgaacacagttaatagaaaatattgtgatttcccttcaaa |
55102801 |
T |
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Target: chr3; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 55102423 - 55102504
Alignment:
| Q |
11 |
cagagacaagttccagttctcagtaagttacccaactcaaattctcttaaaaataattaaacaaagggcattgtttgatgtc |
92 |
Q |
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| T |
55102423 |
cagagacaagttccagttctcagtaagttacccaactcaaattctcttaaaaataattaaacaaagggcattgtttgatgtc |
55102504 |
T |
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