View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9687_low_18 (Length: 233)
Name: NF9687_low_18
Description: NF9687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9687_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 1240135 - 1240336
Alignment:
| Q |
14 |
catagggcataggaaagcaaattttggtgtccaacaccgtatacgtatatggtatagatacaannnnnnnnnnnnnnnnnnnnnnncttggtctccaagt |
113 |
Q |
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| T |
1240135 |
catagggcataggaaagcaaattttggtgtccaacaccgtatacgtatatggtatagatacaattttgttttttaattagttttttcttggtctccaagt |
1240234 |
T |
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| Q |
114 |
cacatccatcgttataaatgtattattatattgtgtcaaattttagatgtttagataacatcactcattgtgaaaatcactctaaacaaatacagttcag |
213 |
Q |
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| T |
1240235 |
cacatccatcgttataaatgtattattatattgtgtcaaattttagatgtttagataacatcactcattgtgaaaatcactctaaacaaatacagttcag |
1240334 |
T |
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| Q |
214 |
at |
215 |
Q |
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|| |
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| T |
1240335 |
at |
1240336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 10175205 - 10175280
Alignment:
| Q |
104 |
gtctccaagtcacatccatcgttataaatgtattattatattgtgtcaaattttagatgtttagataacatcactc |
179 |
Q |
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| T |
10175205 |
gtctccaagtcacatccattgttataaatgtatttttatacggtgtcaaattttagatattcagataacatcactc |
10175280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 10175126 - 10175175
Alignment:
| Q |
27 |
aaagcaaattttggtgtccaacaccgtatacgtatatggtatagatacaa |
76 |
Q |
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| T |
10175126 |
aaagcaatttttggtgtccgacaccatatacatatatggtatagatacaa |
10175175 |
T |
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