View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9687_low_3 (Length: 512)
Name: NF9687_low_3
Description: NF9687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9687_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 11 - 496
Target Start/End: Original strand, 37582866 - 37583353
Alignment:
| Q |
11 |
cagagaaagagtagaaaccataccagtataccggttacggcaagtactgagactgctcccacagccacatcatgaacctgttactcacacatggatatca |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37582866 |
cagagaaagagtagaaaccataccagtataccggttactgcaagtactgagactgctcccacagccacatcatgaacctgttactcacacatggatatca |
37582965 |
T |
|
| Q |
111 |
attttacataaatattaggattaaaaacttgaacctgtaatgttcttagttggg-tgtaccttgagatagaatgcaactgctgtaaatatacatcctgca |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37582966 |
attttacataaatattaggattaaaaacttgaacctgtaatgttcttagttgggatgtaccttgagatagaatgcaactgccgtaaatatacatcctgca |
37583065 |
T |
|
| Q |
210 |
accaatcctgatccagatacctaagtgaaaccaagaaataacaataacaatatacatgaagaggttaagaaaatgaaagttttaagataag-nnnnnnnn |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37583066 |
accaatcctgatccagatacctaagtgaaaccaagaaataacaataacaatatacatgaagaggttaagaaaatgaaagttttaagataagttttttttt |
37583165 |
T |
|
| Q |
309 |
gctttgagtttaccaaaagtaggggcttcctgcctgctttatctatgagggcttctccaacacctgtgatcacaatctgcaaaattaaaaaacataattg |
408 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37583166 |
gcttcgagtttaccaaaagtaggggctacctgcctgctttatctatgagggcttctccaacacctgtgatcacaatctgcaaaattaaaaaacataattg |
37583265 |
T |
|
| Q |
409 |
agttggtttgaagggcggnnnnnnncaaattttctatgaactattggacgagttaaaaataagaacctgaaggatagcaaaaagtatg |
496 |
Q |
| |
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|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37583266 |
agttggtttgaagggcggaaaaaaacaaattttccatgaactattggacgagttaaaaataaaaacctgaaggatagcaaaaagtatg |
37583353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 28 - 414
Target Start/End: Complemental strand, 37464832 - 37464442
Alignment:
| Q |
28 |
ccataccagtataccggttacggcaagtactgagactgctcccacagccacatcatgaacctgttactcacacatggatatcaattttacataaatatta |
127 |
Q |
| |
|
|||||||| ||| |||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
37464832 |
ccataccaatatgccggttaccgcaagtgctgggactgctcccacagccacatcatgaacctgttactcacacacggatatcaattttacataaatatta |
37464733 |
T |
|
| Q |
128 |
ggattaaaaacttgaacctgtaatgttcttagttggg-tgtaccttgagatagaatgcaactgctgtaaatatacatcctgcaaccaatcctgatccaga |
226 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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|
| T |
37464732 |
ggaacaaaaacttgaagctgtaatgttcttagttgggatgtaccttgagatagaatgcaactgcagtaaatatacatcctgcaaccaatcccgatccaga |
37464633 |
T |
|
| Q |
227 |
tacctaagtgaaaccaagaaataacaataacaat---atacatgaagag--gttaagaaaatgaaagttttaagataagnnnnnnnngctttgagtttac |
321 |
Q |
| |
|
||||||| |||||||||||||||||||||| | | |||||||||| | | |||| |||||||| | || ||||| ||||||| ||||| |
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| T |
37464632 |
tacctaattgaaaccaagaaataacaataagagtatgatacatgaagcggagataagcaaatgaaa--ataaaaataagttgtttgcgctttgaatttac |
37464535 |
T |
|
| Q |
322 |
caaaagtaggggcttcctgcctgctttatctatgagggcttctccaacacctgtgatcacaatctgcaaaattaaaaaacataattgagttgg |
414 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||| ||| |||||| ||| |||||||||| |
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|
| T |
37464534 |
caaaagtaggggcttccggcctgctctatctatgagggctgctccaacacctgtgatcacaatctgtgaaaataaaaatcatgattgagttgg |
37464442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 28 - 414
Target Start/End: Original strand, 37589226 - 37589616
Alignment:
| Q |
28 |
ccataccagtataccggttacggcaagtactgagactgctcccacagccacatcatgaacctgttactcacacatggatatcaattttacataaatatta |
127 |
Q |
| |
|
|||||||| ||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
37589226 |
ccataccaatatgccggttacggcaagtgctgggactgctcccacagccacatcatgaacctgttactcatacatggatatcaattttacataaatatta |
37589325 |
T |
|
| Q |
128 |
ggattaaaaacttgaacctgtaatgttcttagttggg-tgtaccttgagatagaatgcaactgctgtaaatatacatcctgcaaccaatcctgatccaga |
226 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
37589326 |
ggaacaaaaacttgaagctgtaatgttcttagttgggatgtaccttgagatagaatgcaactgcagtaaatatacatcctgcaaccaatcctgatccaga |
37589425 |
T |
|
| Q |
227 |
tacctaagtgaaaccaagaaataacaataa---caatatacatgaagagg--ttaagaaaatgaaagttttaagataagnnnnnnnngctttgagtttac |
321 |
Q |
| |
|
|||||| |||||||| ||||||||||||| | |||||||||| || |||| |||||||| | || ||||| ||||||| ||||| |
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|
| T |
37589426 |
tacctatttgaaaccatgaaataacaataagagtattatacatgaattggatataagcaaatgaaa--ataaaaataagttgtttgtgctttgaatttac |
37589523 |
T |
|
| Q |
322 |
caaaagtaggggcttcctgcctgctttatctatgagggcttctccaacacctgtgatcacaatctgcaaaattaaaaaacataattgagttgg |
414 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||| ||| |||||| ||| |||||||||| |
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|
| T |
37589524 |
caaaagtaggggcttccggcctgctctatctatgagggctgctccaacacctgtgatcacaatctgtgaaaataaaaatcatgattgagttgg |
37589616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 31 - 256
Target Start/End: Complemental strand, 49021980 - 49021754
Alignment:
| Q |
31 |
taccagtataccggttacggcaagtactgagactgctcccacagccacatcatgaacctgttactcacacatggatatcaattttacataaatattagga |
130 |
Q |
| |
|
||||| ||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
49021980 |
taccaatatgccggttacggcaagtgctgggactgctcccacagccacatcatgaacctgttactcacacaaggatatcaattttacatatatattagga |
49021881 |
T |
|
| Q |
131 |
ttaaaaacttgaacctgtaatgttcttagttggg-tgtaccttgagatagaatgcaactgctgtaaatatacatcctgcaaccaatcctgatccagatac |
229 |
Q |
| |
|
||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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|
| T |
49021880 |
ataataacttgaagttgtaatgttcttagttgggatgtaccttgagatagaatgcaactgcagtaaatatacatcctgcaaccaatcttgatccagatac |
49021781 |
T |
|
| Q |
230 |
ctaagtgaaaccaagaaataacaataa |
256 |
Q |
| |
|
|||| |||||||||||||||||||||| |
|
|
| T |
49021780 |
ctaattgaaaccaagaaataacaataa |
49021754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 28 - 239
Target Start/End: Original strand, 6777401 - 6777606
Alignment:
| Q |
28 |
ccataccagtataccggttacggcaagtactgagactgctcccacagccacatcatgaacctgttactcacacatggatatcaattttacataaatatta |
127 |
Q |
| |
|
|||||||| ||| |||||||| |||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
6777401 |
ccataccaatatgccggttaccgcaagtgttgagactgctcccaca------tcatgaacctgttactcacacaaggatatcaattttacataaagatta |
6777494 |
T |
|
| Q |
128 |
ggattaaaaacttgaacctgtaatgttcttagttggg-tgtaccttgagatagaatgcaactgctgtaaatatacatcctgcaaccaatcctgatccaga |
226 |
Q |
| |
|
||| ||||| |||||| ||||||||||||||| || |||||||||||||||||||||||||| ||||||||| ||| || |||||||||||||||||| |
|
|
| T |
6777495 |
ggaataaaa-cttgaagttgtaatgttcttagtgaggatgtaccttgagatagaatgcaactgcagtaaatatatatcatgtaaccaatcctgatccaga |
6777593 |
T |
|
| Q |
227 |
tacctaagtgaaa |
239 |
Q |
| |
|
| ||||| ||||| |
|
|
| T |
6777594 |
tgcctaattgaaa |
6777606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 75 - 239
Target Start/End: Original strand, 6772347 - 6772513
Alignment:
| Q |
75 |
ccacatcatgaacctgttactcacacatggatatcaattttacataaatattaggattaaaaacttgaacctgtaatgttcttagt-tgggtgtaccttg |
173 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| | |||||||||| ||||||||||||||| || ||||||||| |
|
|
| T |
6772347 |
ccacatcatgaacctgttactcacacaaggatatcaattttacataaagattaggaat-aaaacttgaagttgtaatgttcttagtgaggatgtaccttg |
6772445 |
T |
|
| Q |
174 |
agatagaatgcaactgctgtaaatatacatcctgcaaccaatcctga--tccagatacctaagtgaaa |
239 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||| |||||||||||| ||||||||||||| ||||| |
|
|
| T |
6772446 |
agatagaatgcaactgcagtaaatatacatactgtaaccaatcctgatctccagatacctaattgaaa |
6772513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 309 - 398
Target Start/End: Complemental strand, 49021661 - 49021572
Alignment:
| Q |
309 |
gctttgagtttaccaaaagtaggggcttcctgcctgctttatctatgagggcttctccaacacctgtgatcacaatctgcaaaattaaaa |
398 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||| ||| |||||||||| |||||||||| |||||||||||||| |||| ||||| |
|
|
| T |
49021661 |
gctttgaatttaccaaaagtaggggcttccggcctgctctatttatgagggctgctccaacacccgtgatcacaatctgtaaaaataaaa |
49021572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 163; Significance: 8e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 31 - 256
Target Start/End: Original strand, 37426262 - 37426488
Alignment:
| Q |
31 |
taccagtataccggttacggcaagtactgagactgctcccacagccacatcatgaacctgttactcacacatggatatcaattttacataaatattagga |
130 |
Q |
| |
|
||||| ||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
37426262 |
taccaatatgccggttacggcaagtgctgggactgctcccacagccacatcatgaacctgttactcacacaaggatatcaattttacatatatattagga |
37426361 |
T |
|
| Q |
131 |
ttaaaaacttgaacctgtaatgttcttagttggg-tgtaccttgagatagaatgcaactgctgtaaatatacatcctgcaaccaatcctgatccagatac |
229 |
Q |
| |
|
||| |||||||| ||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37426362 |
ataataacttgaagttgtaatgttcttagttgggatgtaacttgagatagaatgcaactgcagtaaatatacatcctgcaaccaatcttgatccagatac |
37426461 |
T |
|
| Q |
230 |
ctaagtgaaaccaagaaataacaataa |
256 |
Q |
| |
|
|||| |||||||||||||||||||||| |
|
|
| T |
37426462 |
ctaattgaaaccaagaaataacaataa |
37426488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 309 - 398
Target Start/End: Original strand, 37426580 - 37426669
Alignment:
| Q |
309 |
gctttgagtttaccaaaagtaggggcttcctgcctgctttatctatgagggcttctccaacacctgtgatcacaatctgcaaaattaaaa |
398 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||| ||| |||||||||| ||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
37426580 |
gctttgaatttaccaaaagtaggggcttccggcctgctctatttatgagggctgctccaacacctgtgatcacaatctgtaaaaataaaa |
37426669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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