View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9687_low_5 (Length: 412)
Name: NF9687_low_5
Description: NF9687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9687_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 37430756 - 37430374
Alignment:
| Q |
1 |
aagatttgtcaaaccagaacaccagaaaagatttgtcaaaccaggacaggaaaacactaatagtccaatgcacaagacaagactaccacaatttcaaata |
100 |
Q |
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| T |
37430756 |
aagatttgtcaaaccagaacaccagaaaagatttgtcaaaccaggacaggaaaacactaatagtccaatgcacaagacaagactaccacaatttcaaata |
37430657 |
T |
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| Q |
101 |
caaagagaataagacatatatgcaatattcttttcccttattcattcttcttatcaactactatatgtttgcaatcaatgctttgtaggtcatgcttctg |
200 |
Q |
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| T |
37430656 |
caaagagaataagacatatatgcaatattcttttccctgattcattctgcttatcaactactatatggttgcaatcaatgcttagtaggtcatgcttctg |
37430557 |
T |
|
| Q |
201 |
catctttcaaacctcttcataacctctatagatataggctaaaataatcaaatccaaaatcctaaacaagagagtataatttcctctaaatggggtcctt |
300 |
Q |
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| T |
37430556 |
catctttcaaacctcttcataacatctatagatagaggctaaaataatcaaataaaaaatcctcaagaagagagtatagtttcctctaaatggggtcctt |
37430457 |
T |
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| Q |
301 |
ttgttttctatttccttatcttgcctttcaccnnnnnnngttgatgctgcttactcattttacttcctatacattctcaatgt |
383 |
Q |
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| T |
37430456 |
ttgttttctatttccttatcttgcctttcacttgttcttgttgatgctgctaactctttttacttcctatacattttcaatgt |
37430374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 284 - 379
Target Start/End: Complemental strand, 37698509 - 37698414
Alignment:
| Q |
284 |
ctctaaatggggtccttttgttttctatttccttatcttgcctttcaccnnnnnnngttgatgctgcttactcattttacttcctatacattctca |
379 |
Q |
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| T |
37698509 |
ctctaaatggggtccttttttattctattgccttattttgcctttcactttttcttgttgttgttgcttactcattttacttcctacacactctca |
37698414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 379
Target Start/End: Complemental strand, 37441599 - 37441565
Alignment:
| Q |
345 |
tgctgcttactcattttacttcctatacattctca |
379 |
Q |
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| T |
37441599 |
tgctgcttactcattttacttcctatactttctca |
37441565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 388
Target Start/End: Complemental strand, 37595990 - 37595942
Alignment:
| Q |
340 |
gttgatgctgcttactcattttacttcctatacattctcaatgtccaac |
388 |
Q |
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|||| ||||||||||||||||||||||||| || |||||| ||| |||| |
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| T |
37595990 |
gttgttgctgcttactcattttacttcctacactttctcattgtgcaac |
37595942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 390
Target Start/End: Complemental strand, 14554711 - 14554669
Alignment:
| Q |
348 |
tgcttactcattttacttcctatacattctcaatgtccaacca |
390 |
Q |
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| T |
14554711 |
tgcttactcattttacttcctatactttctcattgtgcaacca |
14554669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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