View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9687_low_9 (Length: 332)
Name: NF9687_low_9
Description: NF9687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9687_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 3e-85; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 155 - 323
Target Start/End: Original strand, 6644165 - 6644335
Alignment:
| Q |
155 |
atatatcatcattttggtgtaataaatatagtggagcacaaaagggaatcatatacatgcatccacgttggagaaat--cctcttggccaatttcatgat |
252 |
Q |
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| T |
6644165 |
atatatcatcattttggtgtaataaatatagtggagcacaaaagggaatcatatacatgcatccacgttggagaaatatcctcttggccaatttcatgat |
6644264 |
T |
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| Q |
253 |
ccttgctcctaaataactaaaataagtatgattatctttggttaataatcatgtcttcacaggagaataat |
323 |
Q |
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| T |
6644265 |
ccttgctcctaaataactaaaataagtatgattatctttggttaataatcatgtcttcacaggagaataat |
6644335 |
T |
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Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 6643973 - 6644043
Alignment:
| Q |
20 |
gtaatcgggtcacacatttgaagtagggaatccatttccatatccatagctctagaaaactcctagaaagt |
90 |
Q |
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| T |
6643973 |
gtaatcgggtcacacatttgaagtagggaatccatttccatatccatagctctagaaaactcctagaaagt |
6644043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 86 - 153
Target Start/End: Original strand, 6644065 - 6644132
Alignment:
| Q |
86 |
aaagttcttggagttcaaccacaatatatattcttacctttctgttgttggtccatttaaattaacgt |
153 |
Q |
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| T |
6644065 |
aaagttcttggagttcaaccacaatatatattcttacctttctgttgttggtccatttaaattaacgt |
6644132 |
T |
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