View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9688_high_1 (Length: 591)
Name: NF9688_high_1
Description: NF9688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9688_high_1 |
 | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 167 - 573
Target Start/End: Complemental strand, 44205306 - 44204892
Alignment:
| Q |
167 |
aatgattataatcaatcaaaacccaattaagcagctgaatggtggcaat--------ttgtttccatgcctttattcttcatgatatcatctttgttgtg |
258 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44205306 |
aatgattataatcaattaaaacccaattaagcagctgaatggtggcaacattttttattctttccatgcctttattcttcatgatatcatctttgttgtg |
44205207 |
T |
|
| Q |
259 |
gttagtaatttgtttgaaagaatgagagcaagttcaattatggtcaagttcaaggaaatgatttaatatatatgaattgaagaacataatatgtgattgt |
358 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44205206 |
gttagtaatttgtttgaaagaatgagagcaagttcaattatggtcaagttcaaggaaatgatttaatatatatgaattgaagaacagaatatgtgattgt |
44205107 |
T |
|
| Q |
359 |
gctgcaaacgtcaaataagttcttcatgtcgtttctgccgcaacaagcaaagaattgttcaatgtgtaattcatttgaaactgttaagtataattaagat |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44205106 |
gctgcaaacgtcaaataagttcttcatgtcgtttctgccgcaacaagcaaagaattgttcaatgtgtaattcatttgaaactgttaagtataattaagat |
44205007 |
T |
|
| Q |
459 |
atgtgcaaccaaatacataaatcacaaacaatcccttccttgttacaaaaaaggtgaataacttggacaaaggaggtaagaaatt-nnnnnnntgagaaa |
557 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44205006 |
atgtgcaaccaaatacataaatcacaaacaatcccttccttgttac-aataaggtgaataacttggacaaaggaggtaagaaattaaaaaaattgagaaa |
44204908 |
T |
|
| Q |
558 |
cctcaaaatccatatt |
573 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
44204907 |
cctcaaaatccatatt |
44204892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 5e-42; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 167 - 391
Target Start/End: Complemental strand, 17982701 - 17982473
Alignment:
| Q |
167 |
aatgattataatcaatcaaaacccaattaagcagctgaatggtggcaat--------ttgtttccatgcctttattcttcatgatatcatctttgttgtg |
258 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| |||| || |||| |||||||||| ||||||||||| ||||| |||| | |
|
|
| T |
17982701 |
aatgattataatcaatcaaaaccaaattaagcagctgaatggtagcaacattcttggttctttctatgcctttatgcttcatgatattatcttcgttgcg |
17982602 |
T |
|
| Q |
259 |
gttagtaatttgtttgaaagaatgagagcaagttcaattatggtcaagttcaaggaaatgatttaatatatatgaattgaagaacataatatgtgattgt |
358 |
Q |
| |
|
||||||||||||||||||||| |||||| || |||||| ||||||||||||||||||||||||| ||||| ||||||||| | |||||||| |||| |
|
|
| T |
17982601 |
gttagtaatttgtttgaaagattgagagtaa-atcaattttggtcaagttcaaggaaatgattta----atatgcattgaagaaaagaatatgtggttgt |
17982507 |
T |
|
| Q |
359 |
gctgcaaac-gtcaaataagttcttcatgtcgtt |
391 |
Q |
| |
|
|| | |||| |||||||||||||||||| |||| |
|
|
| T |
17982506 |
gccgaaaacattcaaataagttcttcatgccgtt |
17982473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 219 - 325
Target Start/End: Original strand, 49870599 - 49870705
Alignment:
| Q |
219 |
tttccatgcctttattcttcatgatatcatctttgttgtggttagtaatttgtttgaaagaatgagagcaagttcaattatggtcaagttcaaggaaatg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
49870599 |
tttccatgcctttattcttcatgatatcatattcgttgtggttagtaatttgtttgaaagaatgagagcaaatctaattatggtcaagttcaaggaaatg |
49870698 |
T |
|
| Q |
319 |
atttaat |
325 |
Q |
| |
|
||||||| |
|
|
| T |
49870699 |
atttaat |
49870705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 167 - 324
Target Start/End: Complemental strand, 20606722 - 20606557
Alignment:
| Q |
167 |
aatgattataatcaatcaaaacccaattaagcagctgaatggtggcaat--------ttgtttccatgcctttattcttcatgatatcatctttgttgtg |
258 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| |||| || |||| |||||||||||||||||||||| |||||||||| | |
|
|
| T |
20606722 |
aatgattataatcaattaaaacccaattaagcagctgaatggtagcaacattcttggttctttctatgcctttattcttcatgatattatctttgttgcg |
20606623 |
T |
|
| Q |
259 |
gttagtaatttgtttgaaagaatgagagcaagttcaattatggtcaagttcaaggaaatgatttaa |
324 |
Q |
| |
|
|||||||||||||||||||||||||||| || | ||||| ||| ||||||||||||||| |||||| |
|
|
| T |
20606622 |
gttagtaatttgtttgaaagaatgagagtaaatccaattttggccaagttcaaggaaataatttaa |
20606557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 400 - 490
Target Start/End: Original strand, 49870740 - 49870831
Alignment:
| Q |
400 |
aacaagcaaagaattgttcaatgtgtaattcatttgaaactgttaagtataattaagat-atgtgcaaccaaatacataaatcacaaacaat |
490 |
Q |
| |
|
|||||| ||| ||||||||||||| ||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
49870740 |
aacaaggaaataattgttcaatgtataattcatttgaaactgttgagtataattaaggtcatgtgcaaccaaatacataaatcacaaacaat |
49870831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 167 - 324
Target Start/End: Complemental strand, 184293 - 184128
Alignment:
| Q |
167 |
aatgattataatcaatcaaaacccaattaagcagctgaatggtggcaat--------ttgtttccatgcctttattcttcatgatatcatctttgttgtg |
258 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |||| || |||| |||||||||||||||||||||| |||||||||| | |
|
|
| T |
184293 |
aatgattataatcagataaaacccaattaagcagctgaatggtagcaacattcttagttctttctatgcctttattcttcatgatattatctttgttgcg |
184194 |
T |
|
| Q |
259 |
gttagtaatttgtttgaaagaatgagagcaagttcaattatggtcaagttcaaggaaatgatttaa |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||| ||| |||||||||||||||||||||| |
|
|
| T |
184193 |
gttagtaatttgtttgaaagaatgagagcaaatccaattttggccaagttcaaggaaatgatttaa |
184128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University