View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9688_high_17 (Length: 276)
Name: NF9688_high_17
Description: NF9688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9688_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 38280744 - 38280485
Alignment:
| Q |
1 |
atgggtattttgtcttttgtatttannnnnnnnaaaacgatcgatgttaatattgttagtaattgtgtattatgtgagtggggatggaactctcaatctc |
100 |
Q |
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| T |
38280744 |
atgggtattttgtcttttgtatttatattttt-aaaacgatcgatgttaatattgttagtaattgtgtattatgtgagtggggatggaactctcaatctc |
38280646 |
T |
|
| Q |
101 |
ctcatcactcattttatgactctctcattcaaaccaccaaaccaaccttatatctcatatcttgtgtttatagtttatttataatacaattatttttgtt |
200 |
Q |
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|||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38280645 |
ctcatcacccattttatgagtctctcattcaagccaccaaaccaaccttatatctcatatcttgtgtttatagtttatttataatacaattatttttgtt |
38280546 |
T |
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| Q |
201 |
ttatgatttggcgatgagaaatatttaatatttgtgatgtcatttatttgtatgatgtttt |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38280545 |
ttatgatttggcgatgagaaatatttaatatttgtgatgtcatttatttgtatgatgtttt |
38280485 |
T |
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