View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9688_high_26 (Length: 229)
Name: NF9688_high_26
Description: NF9688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9688_high_26 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 41525526 - 41525301
Alignment:
| Q |
6 |
accaaacaattgaacattttttgaatggttgcgaacggctaagtatattaattaaagtatcactcaaattgaattcaatcccacaaattgaataaacaaa |
105 |
Q |
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| T |
41525526 |
accaaacaattgaacattttttgaatggttgcgaacggctaagtatattaattaaagtatcactcaaattgaattcaatcccacaaattgaataaacaaa |
41525427 |
T |
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| Q |
106 |
cgttaattcaatttacatgcacattcacaaattgagttcacatctacggtaaaattcatatttaaagacaacattaaatgagtt--catatgatgtcata |
203 |
Q |
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| T |
41525426 |
cgttaattcaatttacatgcacattcacaaattgagttcacatctacggtaaaattcatatttaaagacaacattaaatgagttcacatatgatgtcata |
41525327 |
T |
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| Q |
204 |
tttaagggtgtaacgagaaaaaatct |
229 |
Q |
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| T |
41525326 |
tttaagggtgtaacgagaaaaaatct |
41525301 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 153
Target Start/End: Original strand, 31592893 - 31592969
Alignment:
| Q |
77 |
aattcaatcccacaaattgaataaacaaacgttaattcaatttacatgcacattcacaaattgagttcacatctacg |
153 |
Q |
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| T |
31592893 |
aattcaaacccacaaattgaattaataaatgttaatttaattcacttacacatacacaaattgagttcacgtctacg |
31592969 |
T |
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