View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9688_high_28 (Length: 224)
Name: NF9688_high_28
Description: NF9688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9688_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 60 - 210
Target Start/End: Original strand, 44189016 - 44189166
Alignment:
| Q |
60 |
tgcatgcatactcgatcaaacactcacgtccaaacacaatactgtgttctccatacatatcatcaatcattgnnnnnnnccatataaacatcaacctcca |
159 |
Q |
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| T |
44189016 |
tgcatgcatactcgatcaaacactcacgtccaaacacaatactgtgttctccatacatatcatcaatcattgtttttttccatatagacatcaacctcca |
44189115 |
T |
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| Q |
160 |
ctgcctctatgaacctgttcacactttttattggtctctacaattattttt |
210 |
Q |
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| T |
44189116 |
ctgcctctatgaacctgttcacactttttattggtctctacaattattttt |
44189166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 44188937 - 44188985
Alignment:
| Q |
15 |
cagagatatcacatccatctgcaacttaacatcaaacagttctcttgca |
63 |
Q |
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| T |
44188937 |
cagagatatcacatccatctgcaacttaacatcaaacagttctcttgca |
44188985 |
T |
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