View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9688_high_30 (Length: 203)
Name: NF9688_high_30
Description: NF9688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9688_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 14 - 185
Target Start/End: Complemental strand, 32591937 - 32591766
Alignment:
| Q |
14 |
aaaggcagtttttcagcactcatggcttgaacttcgaaggtatagttcaccggtgagaggtcgaagacggtgcaagattgaccagggaaaatccatgatt |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32591937 |
aaaggcagtttttcagcactcatggcttgaacttcgaaggtatagttcaccggtgagaggtcgaagacggtgcaagattgaccagggaaaacccatgatt |
32591838 |
T |
|
| Q |
114 |
tctttgcaagtttgatgtcttcgattccggctccggttatcaccaggtactcggatgcttttgcaaccctgt |
185 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32591837 |
tctttgcaagtttgatgtcttcgattccagctccggttatcaccaggtactcggatgcttttgctaccctgt |
32591766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 31527994 - 31528165
Alignment:
| Q |
14 |
aaaggcagtttttcagcactcatggcttgaacttcgaaggtatagttcaccggtgagaggtcgaagacggtgcaagattgaccagggaaaatccatgatt |
113 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31527994 |
aaaggcagtttttcggcactcatggcttgaacttcgaaggtgtagttcaccggagagaggtcgaaaacggtgcaagattgaccagggaaaatccatgatt |
31528093 |
T |
|
| Q |
114 |
tctttgcaagtttgatgtcttcgattccggctccggttatcaccaggtactcggatgcttttgcaaccctgt |
185 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
31528094 |
tctttgcaagtttgatgtcttcgattccggctccggttatcaccagatactcggatgcttttgctaccctgt |
31528165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 14 - 185
Target Start/End: Original strand, 51825397 - 51825568
Alignment:
| Q |
14 |
aaaggcagtttttcagcactcatggcttgaacttcgaaggtatagttcaccggtgagaggtcgaagacggtgcaagattgaccagggaaaatccatgatt |
113 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
51825397 |
aaaggcagtttttcggcactcatggcttgaacttcgaaggtgtagttcaccggtgagaggtcgaagacagtggaagattgaccagggaaaatccatgatt |
51825496 |
T |
|
| Q |
114 |
tctttgcaagtttgatgtcttcgattccggctccggttatcaccaggtactcggatgcttttgcaaccctgt |
185 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
51825497 |
tctttgcaagtttgatgtcttcgattccggctccggttaacaccaggtactcggatgcttttgctaccctgt |
51825568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 37031387 - 37031507
Alignment:
| Q |
14 |
aaaggcagtttttcagcactcatggcttgaacttcgaaggtatagttcaccggtgagaggtcgaagacggtgcaagattgaccagggaaaatccatgatt |
113 |
Q |
| |
|
||||| ||||| || || ||||| ||||||||||||||||| ||||| |||||||||||||| ||||| | ||| |||||||| || | |||||||| || |
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| T |
37031387 |
aaaggaagtttctccgcgctcatagcttgaacttcgaaggtgtagtttaccggtgagaggtccaagacagagcaggattgaccgggaagaatccatgctt |
37031486 |
T |
|
| Q |
114 |
tctttgcaagtttgatgtctt |
134 |
Q |
| |
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||||||||||||||||||||| |
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| T |
37031487 |
tctttgcaagtttgatgtctt |
37031507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 182
Target Start/End: Original strand, 49208889 - 49209057
Alignment:
| Q |
14 |
aaaggcagtttttcagcactcatggcttgaacttcgaaggtatagttcaccggtgagaggtcgaagacggtgcaagattgaccagggaaaatccatgatt |
113 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||| || |||||||||| || |
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| T |
49208889 |
aaagggagtttttcagcactcatggcttgaacttcgaaggtgtagttcaccggtgagaggtcgaagacagtgcaggattgacctggaaaaatccatgctt |
49208988 |
T |
|
| Q |
114 |
tctttgcaagtttgatgtcttcgattccggctccggttatcaccaggtactcggatgcttttgcaaccc |
182 |
Q |
| |
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||||| |||| || | || || |||||||| || |||||||| ||||| || ||||| ||||| |||| |
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| T |
49208989 |
tcttttcaagctttacatcgtcaattccggcgccagttatcacaaggtattctgatgcctttgctaccc |
49209057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 182
Target Start/End: Original strand, 49213729 - 49213897
Alignment:
| Q |
14 |
aaaggcagtttttcagcactcatggcttgaacttcgaaggtatagttcaccggtgagaggtcgaagacggtgcaagattgaccagggaaaatccatgatt |
113 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||| || |
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| T |
49213729 |
aaagggagtttttcggcactcatggcttgaacttcgaaggtatagttcaccggtgaaaggtcgaagaccgtgcatgattgaccggggaaaatccatgctt |
49213828 |
T |
|
| Q |
114 |
tctttgcaagtttgatgtcttcgattccggctccggttatcaccaggtactcggatgcttttgcaaccc |
182 |
Q |
| |
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||||| ||||| ||||| ||||||||||| || ||||| | || || || ||||||||||| |||| |
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| T |
49213829 |
tcttttggagttttatgtcgtcgattccggcaccagttatagcaagatattctgatgcttttgctaccc |
49213897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 49203713 - 49203833
Alignment:
| Q |
14 |
aaaggcagtttttcagcactcatggcttgaacttcgaaggtatagttcaccggtgagaggtcgaagacggtgcaagattgaccagggaaaatccatgatt |
113 |
Q |
| |
|
||||| ||||| || |||||||| ||||||||||||||||| ||||| |||||||||||||| ||||||| ||| || ||||| || | |||||||| || |
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| T |
49203713 |
aaaggaagtttctcggcactcatagcttgaacttcgaaggtgtagtttaccggtgagaggtccaagacggagcaggactgaccgggaataatccatgctt |
49203812 |
T |
|
| Q |
114 |
tctttgcaagtttgatgtctt |
134 |
Q |
| |
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||||||||||||| ||||||| |
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| T |
49203813 |
tctttgcaagttttatgtctt |
49203833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 49188876 - 49188996
Alignment:
| Q |
14 |
aaaggcagtttttcagcactcatggcttgaacttcgaaggtatagttcaccggtgagaggtcgaagacggtgcaagattgaccagggaaaatccatgatt |
113 |
Q |
| |
|
||||| ||||| || |||||||| ||||||||||| ||||| ||||| |||||||||||||| ||||| ||||| |||||||| || |||||||||| || |
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| T |
49188876 |
aaaggaagtttctcggcactcatagcttgaacttcaaaggtgtagtttaccggtgagaggtccaagacagtgcaggattgaccgggaaaaatccatgctt |
49188975 |
T |
|
| Q |
114 |
tctttgcaagtttgatgtctt |
134 |
Q |
| |
|
||||| ||||||||||||| |
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|
| T |
49188976 |
tctttttgagtttgatgtctt |
49188996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 177
Target Start/End: Original strand, 49192612 - 49192775
Alignment:
| Q |
14 |
aaaggcagtttttcagcactcatggcttgaacttcgaaggtatagttcaccggtgagaggtcgaagacggtgcaagattgaccagggaaaatccatgatt |
113 |
Q |
| |
|
||||| ||||| || || ||||| ||||||||||| ||||| || || || ||||||||||||||||||| | | |||||||| || | |||||||| || |
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| T |
49192612 |
aaaggaagtttctctgcgctcattgcttgaacttcaaaggtgtaatttacaggtgagaggtcgaagacggagtaggattgaccgggtagaatccatgctt |
49192711 |
T |
|
| Q |
114 |
tctttgcaagtttgatgtcttcgattccggctccggttatcaccaggtactcggatgcttttgc |
177 |
Q |
| |
|
||||||| || || ||||||| ||||||| |||||||||||| ||||| | ||||||||||| |
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|
| T |
49192712 |
tctttgcgagctttatgtctttgattccgattccggttatcacaaggtattgtgatgcttttgc |
49192775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 32 - 119
Target Start/End: Complemental strand, 29622814 - 29622725
Alignment:
| Q |
32 |
ctcatggcttgaacttcgaaggtatagttcaccggtg--agaggtcgaagacggtgcaagattgaccagggaa-aatccatgatttctttg |
119 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||| || ||||| ||| ||||||||||||| |
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| T |
29622814 |
ctcattgcttgaacttcgaaggtgtagttcaccggtgagagaggtcgaagacggtgcaggattg-cctgggaagaattcatgatttctttg |
29622725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 20 - 177
Target Start/End: Original strand, 26757261 - 26757417
Alignment:
| Q |
20 |
agtttttcagcactcatggcttgaacttcgaaggtatagttcaccggtgagaggtcgaagacggtgcaagattgaccagggaaaatccatgatttctttg |
119 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||| ||||| || ||||||| || ||| ||| || | |||| ||| || | |||||||| ||| ||| |
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| T |
26757261 |
agtttttcagcactcattgcttgaactttgaaggtgtagtttactggtgaga-gttgaaaacgctgtacgatttaccgggaagaatccatgctttgttta |
26757359 |
T |
|
| Q |
120 |
caagtttgatgtcttcgattccggctccggttatcaccaggtactcggatgcttttgc |
177 |
Q |
| |
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| ||||||||||||| ||| | |||||||||||||| ||||| || ||||||||||| |
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|
| T |
26757360 |
cgagtttgatgtctttgatccatgctccggttatcacaaggtattctgatgcttttgc |
26757417 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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