View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9688_high_4 (Length: 409)
Name: NF9688_high_4
Description: NF9688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9688_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 22 - 396
Target Start/End: Original strand, 2020270 - 2020643
Alignment:
| Q |
22 |
gtaatgaagtgttgggatgaaatttaatatgctatgtagtacaaagtgttgtcaatcaatgttgtcgacagtggatggcggagtatagctgatggttaaa |
121 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2020270 |
gtaacgaagtgttgggatgaaatttaatatgcaatgtagtacaaagtgttgccaatcaatgttgtcgacagtggatggcggagtatagctgatggttaaa |
2020369 |
T |
|
| Q |
122 |
aatccgctatataaacaagccattgcagcctatggcaccgtgacgacaggcattccttcacaaattatctatggtaagttgtccaaaacactgccatggt |
221 |
Q |
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| T |
2020370 |
aatccgctatataaacaagccattgcagcctatggcaccgtgacgacaggcattccttcacaaattatctatggtaagttgtccaaaacaccgccatggt |
2020469 |
T |
|
| Q |
222 |
ggtgccatgaccaccatttagtaacactgctgtcaaaaagcggttatagtggcactataacagtgcagcgtaagggaatttgaacaagttgctatttttt |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2020470 |
ggtgccatgaccaccatttagtaacactgctgtcaaaaagcggttatagtggcactataacag-gcagcgtaagggaatttgaacaagttgctatttttt |
2020568 |
T |
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| Q |
322 |
gtgattgacaacactaattttagatgatttatacatattcctgttatagagggttctatgattgcagtctcttct |
396 |
Q |
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| T |
2020569 |
gcgattgacaacactaattttagatgatttatacatattcctgttatagagggttctatgattgaagtctcttct |
2020643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 214 - 303
Target Start/End: Original strand, 2017964 - 2018053
Alignment:
| Q |
214 |
gccatggtggtgccatgaccaccatttagtaacactgctgtcaaaaagcggttatagtggcactataacagtgcagcgtaagggaatttg |
303 |
Q |
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| T |
2017964 |
gccatggtggtgccacgaccaccatttagtaacactgttgtcaaaaagcggttatagtggcgctatgacagtgcagcgtaaagggatttg |
2018053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 62 - 186
Target Start/End: Original strand, 2017835 - 2017959
Alignment:
| Q |
62 |
acaaagtgttgtcaatcaatgttgtcgacagtggatggcggagtatagctgatggttaaaaatccgctatataaacaagccattgcagcctatggcaccg |
161 |
Q |
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|||||||||||||||||||||||||| | | ||||||| || |||||| ||||||||||||||| ||||| ||||| |||||||||||||||| ||| | |
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| T |
2017835 |
acaaagtgttgtcaatcaatgttgtctatggcggatggcagaatatagccgatggttaaaaatcctctatacaaacacgccattgcagcctatgacactg |
2017934 |
T |
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| Q |
162 |
tgacgacaggcattccttcacaaat |
186 |
Q |
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|| || ||||||||||| ||||| |
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| T |
2017935 |
cgatgatgggcattccttcccaaat |
2017959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 263 - 344
Target Start/End: Original strand, 2035443 - 2035524
Alignment:
| Q |
263 |
ggttatagtggcactataacagtgcagcgtaagggaatttgaacaagttgctattttttgtgattgacaacactaattttag |
344 |
Q |
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||||||||||| |||||||| |||||||||| ||||||||||||| || |||||||||| ||||||||||||| ||||||| |
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| T |
2035443 |
ggttatagtggggctataacaatgcagcgtaaaggaatttgaacaaattcctattttttgcgattgacaacactgattttag |
2035524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 369
Target Start/End: Original strand, 2018050 - 2018100
Alignment:
| Q |
319 |
tttgtgattgacaacactaattttagatgatttatacatattcctgttata |
369 |
Q |
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||||||||||| |||| | ||||||||||||||||||||||| ||||||| |
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| T |
2018050 |
tttgtgattgataacattgattttagatgatttatacatatttgtgttata |
2018100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 76
Target Start/End: Complemental strand, 30692492 - 30692464
Alignment:
| Q |
48 |
atatgctatgtagtacaaagtgttgtcaa |
76 |
Q |
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| T |
30692492 |
atatgctatgtagtacaaagtgttgtcaa |
30692464 |
T |
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