View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9688_high_8 (Length: 375)
Name: NF9688_high_8
Description: NF9688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9688_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 108; Significance: 4e-54; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 223 - 360
Target Start/End: Original strand, 5580635 - 5580774
Alignment:
| Q |
223 |
aaaaaggcatcataatnnnnnnngaaatagatagaatcacaaagtgcactataa--gctaatttcaatttgaattaatcacttaaaatgtaaaagaaact |
320 |
Q |
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| T |
5580635 |
aaaaaggcatcataataaaaaaagaaatagatagaatcacaaagtgcactataaaagctaatttcaatttgaattaatcacttaaaatgtaaaagaaact |
5580734 |
T |
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| Q |
321 |
caccttagccaaattaagggtgccactttatattccttct |
360 |
Q |
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| T |
5580735 |
caccttagccaaattaagggtgccactttatattccttct |
5580774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 12066765 - 12066709
Alignment:
| Q |
92 |
tcttatatagaacaagtttacatatgttatgtttcattgctagcaatgtgggactaa |
148 |
Q |
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||||||||||||||| || |||| ||||||||||| ||| ||||||||||||||||| |
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| T |
12066765 |
tcttatatagaacaacttcacatgtgttatgtttctttggtagcaatgtgggactaa |
12066709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 12047047 - 12046991
Alignment:
| Q |
92 |
tcttatatagaacaagtttacatatgttatgtttcattgctagcaatgtgggactaa |
148 |
Q |
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| T |
12047047 |
tcttatatataacaacttcacatgtgttatttttctttgctagcaatgtgggactaa |
12046991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 12058677 - 12058621
Alignment:
| Q |
92 |
tcttatatagaacaagtttacatatgttatgtttcattgctagcaatgtgggactaa |
148 |
Q |
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| T |
12058677 |
tcttatatataacaacttcacatgtgttatgtttctttgctagcaatatgggactaa |
12058621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 148
Target Start/End: Original strand, 5570071 - 5570125
Alignment:
| Q |
94 |
ttatatagaacaagtttacatatgttatgtttcattgctagcaatgtgggactaa |
148 |
Q |
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||||||||||||| || | ||||||||||||| ||||| ||||||||||||||| |
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| T |
5570071 |
ttatatagaacaacttcccgtatgttatgtttctttgctggcaatgtgggactaa |
5570125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 148
Target Start/End: Original strand, 5578632 - 5578686
Alignment:
| Q |
94 |
ttatatagaacaagtttacatatgttatgtttcattgctagcaatgtgggactaa |
148 |
Q |
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|||||||| |||| | ||| ||||||||||||| |||| |||||||||||||||| |
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| T |
5578632 |
ttatataggacaactctacgtatgttatgtttctttgcaagcaatgtgggactaa |
5578686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 5584908 - 5584959
Alignment:
| Q |
94 |
ttatatagaacaagtttacatatgttatgtttcattgctagcaatgtgggacta |
147 |
Q |
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| T |
5584908 |
ttatatagaacaagtt--catatgttatgtttctttgctagcgatgttggacta |
5584959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 148
Target Start/End: Complemental strand, 1085724 - 1085688
Alignment:
| Q |
112 |
catatgttatgtttcattgctagcaatgtgggactaa |
148 |
Q |
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||||||||||||||| ||||||| ||||||||||||| |
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| T |
1085724 |
catatgttatgtttctttgctagaaatgtgggactaa |
1085688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 12051359 - 12051303
Alignment:
| Q |
92 |
tcttatatagaacaagtttacatatgttatgtttcattgctagcaatgtgggactaa |
148 |
Q |
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||||||||| ||||| || |||| |||| |||||| |||| |||||||||||||||| |
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| T |
12051359 |
tcttatatataacaacttcacatgtgttttgtttctttgcaagcaatgtgggactaa |
12051303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 12064122 - 12064066
Alignment:
| Q |
92 |
tcttatatagaacaagtttacatatgttatgtttcattgctagcaatgtgggactaa |
148 |
Q |
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|||| |||| ||||| || |||| ||||||||||| || |||||||||||||||||| |
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| T |
12064122 |
tcttgtatataacaacttcacatgtgttatgtttctttcctagcaatgtgggactaa |
12064066 |
T |
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