View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9688_low_1 (Length: 621)
Name: NF9688_low_1
Description: NF9688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9688_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 17 - 611
Target Start/End: Complemental strand, 42224938 - 42224345
Alignment:
| Q |
17 |
atttttagcatgtgaaaattgataatatcctatcatcgaagtcccaccgaagtaaatacacctttatattaacctcaagttttcattttgatctttccaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42224938 |
atttttagcatgtgaaaattgataatatcctatcatcgaagtcccaccgaagtaaatacacctttctattaacctcaagttttcattttgatctttccaa |
42224839 |
T |
|
| Q |
117 |
ttttcacttatttattacagtaacctgacccaccaatatatctaccaattaattttagaaaccgaaccaaccagaccctagcactataatttttgaacat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42224838 |
ttttcacttatttattacagtaacctgacccaccaatatatctaccaattaaatttagaaaccgaaccaaccagaccctagcactataatttttgaacat |
42224739 |
T |
|
| Q |
217 |
ttgggggcaactcacccccctctaccatctctaaatgcactgtgatcaattattcttatacgaggacaataaatgttgaagttatgaaaaaattaaggaa |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42224738 |
ttgggggcaactcacccccctctaccatctctaaatgcattgtgatcaattattcttatacgaggacaataaatgttgaagttatgaaaaaattaaggaa |
42224639 |
T |
|
| Q |
317 |
gcgctaaatattttatcatatttaagannnnnnnnattgatttgtgcctgtaatgccatgttggggcaagaattttctctcnnnnnnnnnctaggttaaa |
416 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
42224638 |
gcactaaatattttatcatatttaagattttttttattgatttgtgcctgtaatgccatgttggggcaagaattttctctc-ttttttttctaggttaaa |
42224540 |
T |
|
| Q |
417 |
gaagaatatggctcttgtatgctttgtgtacatttcccttgtttaattgaataattgtattgnnnnnnnnnnnnnnnntccaggccaacttttattgcga |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
42224539 |
gaagaatatggctcttgtatgctttgtgtacatttcccttgtttaattgaataattgtattgaaaataaaaataaaaatccaggccaacttttattgcga |
42224440 |
T |
|
| Q |
517 |
tatggaagaaaggatctgtggagcaattctcaccagcaccatacctagcaacacttgttaactgcatggtatggacactgtacggtctgcctatg |
611 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42224439 |
tatggaagaaaggatctgtggagcaattctcaccagcaccatacctagcaacacttgttaactgcatggtatggacactatacggtctgcctatg |
42224345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 497 - 565
Target Start/End: Original strand, 36675385 - 36675453
Alignment:
| Q |
497 |
caggccaacttttattgcgatatggaagaaaggatctgtggagcaattctcaccagcaccatacctagc |
565 |
Q |
| |
|
||||||||| ||| ||| |||||| ||||||||||| ||||| |||| |||||| | |||||||||||| |
|
|
| T |
36675385 |
caggccaacatttgttgggatatgcaagaaaggatcagtggaacaatactcacccgtaccatacctagc |
36675453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 497 - 565
Target Start/End: Original strand, 36685467 - 36685535
Alignment:
| Q |
497 |
caggccaacttttattgcgatatggaagaaaggatctgtggagcaattctcaccagcaccatacctagc |
565 |
Q |
| |
|
||||||||| ||| ||| |||||| ||||||||||| ||||| |||| |||||| | |||||||||||| |
|
|
| T |
36685467 |
caggccaacatttgttgggatatgcaagaaaggatcagtggaacaatactcacccgtaccatacctagc |
36685535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University