View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9688_low_10 (Length: 390)
Name: NF9688_low_10
Description: NF9688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9688_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 24 - 203
Target Start/End: Complemental strand, 35401964 - 35401785
Alignment:
| Q |
24 |
gggacaaaactgaaataaaagaaaaatgaatactaaatcatgcatgtgatgtataaaacccttggaaacatcgaataggcaagcttcgtgtaaaacatga |
123 |
Q |
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| T |
35401964 |
gggacaaaactgtaataaaagaaaaatgaatactaaatcatgcatgtgatgtataaaacccttggaaacatcgaataggcaagcttcgtgtaaaacatga |
35401865 |
T |
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| Q |
124 |
ttttgttaataatattaaggttctgaaatataccttggccagactcatcaagctttttactccggtacatctgaacctcc |
203 |
Q |
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| T |
35401864 |
ttttgttaataatattaaggttctgaaatataccttggccagactcatcaagctttttactccggtacatctgaacctcc |
35401785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 266 - 380
Target Start/End: Complemental strand, 35401722 - 35401608
Alignment:
| Q |
266 |
tactctaaattaagtaacactagtgttgtgcataaatcaacttctatacatgcatagctatattacctgcaaatgactcttcacatgtgcaattctaagt |
365 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35401722 |
tactctaaattaagtaacactagtgttgtccataaatcaacttctatacatgcatagctatattacctgcaaatgactcttcacatgtgcaattctaagt |
35401623 |
T |
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| Q |
366 |
cctctcacattcatc |
380 |
Q |
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| T |
35401622 |
cctctcacattcatc |
35401608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 35848625 - 35848574
Alignment:
| Q |
329 |
tacctgcaaatgactcttcacatgtgcaattctaagtcctctcacattcatc |
380 |
Q |
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| T |
35848625 |
tacctgcaaatgactcttgacatgagcaatgctgagtcctctcacattcatc |
35848574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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