View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9688_low_11 (Length: 382)
Name: NF9688_low_11
Description: NF9688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9688_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 6896210 - 6896577
Alignment:
| Q |
1 |
agtaattagaatattaagaacgtagctggtatcaatttgtacaccaataatgtaaaacttaaaagatatcttaatccgaacatagttgtgctcaacaatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6896210 |
agtaattagaatattaagaacgtagctggtatcaatttgtacaccaataatgtaaaacttaaaagatatcttaatccgaacatagttgtgctcaacaatc |
6896309 |
T |
|
| Q |
101 |
tcttttggagagttctcgatcattgccccttttacgtttagagtgatcataatgtcattgtccgttcggttttaaagtggtctgcataccatagtccctt |
200 |
Q |
| |
|
| | |||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6896310 |
t-tgttggagagttattgatcattgtcccttttacgtttagagtgatcataatgtcattgtccgttcggttttaaagtggtctgcataccatagtccctt |
6896408 |
T |
|
| Q |
201 |
ccgtttgtgagtggtcttaatgccatatttgtagttgctgagtggattctaccatattttaaggtgcaattttataatggatcctacaatgcagtgggag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6896409 |
ccgtttgtgagtggtcttaatgccatatttgtagttgctgagtggattctaccatattttcaggtgcaattttataacagatcctacaatgcagtgggag |
6896508 |
T |
|
| Q |
301 |
tccgatacaa-tttagctgagttgttttatcttggtaacgttgtggttgataatatgttagcacaattt |
368 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6896509 |
tccgatacaattttagctgagttgttttatcttggtaacgttgtggttgataatatgttagcacaattt |
6896577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 368
Target Start/End: Original strand, 23616310 - 23616428
Alignment:
| Q |
251 |
accatattttaaggtgcaattttataatggatcctacaatgcagtgggagtccgatacaatt-tagctgagttgttttatcttggtaacgttgtggttga |
349 |
Q |
| |
|
||||||||| |||||| | || || ||||||||||| | |||||| ||| || ||||||||| ||| |||||||||||||| || |||| |||||||| |
|
|
| T |
23616310 |
accatatttgaaggtgaatttctagaatggatcctatagtgcagtaggattctgatacaattgtagttgagttgttttatcatgaggacgtcgtggttga |
23616409 |
T |
|
| Q |
350 |
taatatgttagcacaattt |
368 |
Q |
| |
|
|| |||| | ||||||||| |
|
|
| T |
23616410 |
tagtatgcttgcacaattt |
23616428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University