View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9688_low_13 (Length: 371)
Name: NF9688_low_13
Description: NF9688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9688_low_13 |
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| [»] chr2 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 12 - 371
Target Start/End: Complemental strand, 41228381 - 41228022
Alignment:
| Q |
12 |
caaaggcaagtggttggactattgaaaatattaaccaagatcttgaaagaatctgttggaaagggagtgcagaaaacaagcatcagaaccctttctgtgt |
111 |
Q |
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| T |
41228381 |
caaaggcaagtggttggactattgaaaatattaaccaagatcttgaaagaatctgttggaaagggagtgcagaaaacaagcatcagaaccctttctgtgt |
41228282 |
T |
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| Q |
112 |
acacaagagagaacttcaattcagattgtaatcacactttatctttctatgttctatttatataacttagttgattatttttgttgttaacaacataaat |
211 |
Q |
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| T |
41228281 |
acacaagagagaacttcaattcagattgtaatcacactttatctttctatgttctatttatataacttagttgattatttttgttgttaacaacataaat |
41228182 |
T |
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| Q |
212 |
tgtttaattgttgttgttacagagacaaagagagtaagtatcaagaggactatcgcgggaaacatcaattagttgcaaccaaccaaatgagactttgctt |
311 |
Q |
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| T |
41228181 |
tgtttaattgttgttgttacagagacaaagagagtaagtatcaagaggactatcgcgggaaacatcaattagttgcaaccaaccaaatgagactttgctt |
41228082 |
T |
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| Q |
312 |
cgatgcttctccaaaacgaaaagttacttccaaagagttcaagagaggcgcattttctcc |
371 |
Q |
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| T |
41228081 |
cgatgcttctccaaaacgaaaagttacttccaaagagttcaagagaggcgcattttctcc |
41228022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 42 - 371
Target Start/End: Original strand, 37376808 - 37377137
Alignment:
| Q |
42 |
ttaaccaagatcttgaaagaatctgttggaaagggagtgcagaaaacaagcatcagaaccctttctgtgtacacaagagagaacttcaattcagattgta |
141 |
Q |
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| T |
37376808 |
ttaaccgagatcttgaaagaatctgttggaaagggagtgcagaaaacttgcatcagaaccctttctgcgtacacaaaagagaacttccattgagattgta |
37376907 |
T |
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| Q |
142 |
atcacactttatctttctatgttctatttatataacttagttgattatttttgttgttaacaacataaattgtttaattgttgttgttacagagacaaag |
241 |
Q |
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| T |
37376908 |
ataacgctttatctttctatgctctgtttatataacttatttgactatttttgttgttaacaacataaattatttaatttatgttgttacagagatggag |
37377007 |
T |
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| Q |
242 |
agagtaagtatcaagaggactatcgcgggaaacatcaattagttgcaaccaaccaaatgagactttgcttcgatgcttctccaaaacgaaaagttacttc |
341 |
Q |
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| T |
37377008 |
agagtatgtatcatgaggactatcgcgggaaacatcatttggttgcaaccaaccaaatgagagtttgcttagatggttctacaaaacgaaaagatacttc |
37377107 |
T |
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| Q |
342 |
caaagagttcaagagaggcgcattttctcc |
371 |
Q |
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| T |
37377108 |
caaagatttgaagagagccacattttctcc |
37377137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 44 - 371
Target Start/End: Original strand, 37384176 - 37384503
Alignment:
| Q |
44 |
aaccaagatcttgaaagaatctgttggaaagggagtgcagaaaacaagcatcagaaccctttctgtgtacacaagagagaacttcaattcagattgtaat |
143 |
Q |
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| T |
37384176 |
aaccaagatcttgaaagaatctgttggaaagggagtttagaaatcaagaatcagaaccctttctgcgtacacaagagagaccttcaattcagattgtaat |
37384275 |
T |
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| Q |
144 |
cacactttatctttctatgttctatttatataacttagttgattatttttgttgttaacaacataaattgtttaattgttgttgttacagagacaaagag |
243 |
Q |
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| T |
37384276 |
caggctttatctttctctgttctatttatataatttggttgattattttttttgtcaacaacataaattgttttattgatattgttgcagagatggagag |
37384375 |
T |
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| Q |
244 |
agtaagtatcaagaggactatcgcgggaaacatcaattagttgcaaccaaccaaatgagactttgcttcgatgcttctccaaaacgaaaagttacttcca |
343 |
Q |
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| || | |||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||| |||| |||| ||||||||||||||||||||| |
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| T |
37384376 |
aatacgcatcaagaggactatcgcgggaaacatcatttggttgcaaccaaccaaatgagattttgcttggatggttcttcaaaacgaaaagttacttcca |
37384475 |
T |
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| Q |
344 |
aagagttcaagagaggcgcattttctcc |
371 |
Q |
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| T |
37384476 |
aagagttcaacaaaggcacattttctcc |
37384503 |
T |
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