View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9688_low_14 (Length: 370)
Name: NF9688_low_14
Description: NF9688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9688_low_14 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 33 - 370
Target Start/End: Complemental strand, 24300547 - 24300209
Alignment:
| Q |
33 |
tacacaagtcaaatacaatgctatttgccaaacatgtagcaaaatagcacactcccccttaaaataacaagatcaaaccaagcaccaccccgcccaatca |
132 |
Q |
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| T |
24300547 |
tacacaagtcaaatacaatgctatttgccaaacatgtagcaaaatagcacactcccccttaaaataacaagatcaaaccaagcaccaccccgcccaatca |
24300448 |
T |
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| Q |
133 |
acaatcgcacttctaaaggtcccatgaaattactcctacattcaatgagagtagctacgaaaacttgcaacataaaccaagagatctaaactccaaatcc |
232 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
24300447 |
ccaatcgcacttctgaaggtcccatgaaattactcctacattcaatgagagtagctacgaaaacttgcaacataaaccaagagatctaaactctaaatac |
24300348 |
T |
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| Q |
233 |
agcaagctgacaataaacaattgagctagatgaaactgctcccatcagtccaatacttctttttaaaatacagtataa-aacacttagcagagacaacaa |
331 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
24300347 |
agcaagctgacaataaacaatagagctagatgaaactgctcccatcagtccaatacttctttttaaaatacagtataatcacacttagcagagacaacaa |
24300248 |
T |
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| Q |
332 |
catgaacaacagctcatcctcgaaatgacatggtttgcg |
370 |
Q |
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| T |
24300247 |
tatgcacaacagctcctcctcgaaatgacatggtttgcg |
24300209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 16 - 119
Target Start/End: Original strand, 3654028 - 3654131
Alignment:
| Q |
16 |
aatagattaaaaactaatacacaagtcaaatacaatgctatttgccaaacatgtagcaaaatagcacactcccccttaaaataacaagatcaaaccaagc |
115 |
Q |
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| T |
3654028 |
aatagatcaaaaactaatacacaagtcacatacaatgttttctcccaaacatgtaacaaaatagcagactcctgcttaaaataacaagatcagtccaagc |
3654127 |
T |
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| Q |
116 |
acca |
119 |
Q |
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|||| |
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| T |
3654128 |
acca |
3654131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 58 - 119
Target Start/End: Complemental strand, 3701350 - 3701289
Alignment:
| Q |
58 |
tgccaaacatgtagcaaaatagcacactcccccttaaaataacaagatcaaaccaagcacca |
119 |
Q |
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| T |
3701350 |
tgccaaacatgtagcaaagtagcatactcctccttaaaataacaagatcagtccaagcacca |
3701289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 119
Target Start/End: Complemental strand, 3675169 - 3675059
Alignment:
| Q |
16 |
aatagattaaaaactaatacacaagtcaaatacaatgctatttgccaaacatg----tagcaaaatagcaca---ctcccccttaaaataacaagatcaa |
108 |
Q |
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||||||| ||||||||||| |||| ||| |||||||||||||||||||||||| ||||||||||||| | ||| ||| ||||||||||||||| |
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| T |
3675169 |
aatagatcaaaaactaataaacaaatcacatacaatgctatttgccaaacatgcatgtagcaaaatagcaaaagactcttcctaaaaataacaagatcag |
3675070 |
T |
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| Q |
109 |
accaagcacca |
119 |
Q |
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|||||||||| |
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| T |
3675069 |
tccaagcacca |
3675059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 284 - 370
Target Start/End: Complemental strand, 3701276 - 3701189
Alignment:
| Q |
284 |
aatacttctttttaaaatacagtataaa-acacttagcagagacaacaacatgaacaacagctcatcctcgaaatgacatggtttgcg |
370 |
Q |
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|||| ||||| ||||||| ||| ||||| |||| | |||||| |||||||||| ||||||||| | |||||||| |||||||||||| |
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| T |
3701276 |
aataattcttgttaaaatgcagcataaacacacattgcagaggcaacaacatgtacaacagcttctgctcgaaataacatggtttgcg |
3701189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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