View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9688_low_15 (Length: 366)
Name: NF9688_low_15
Description: NF9688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9688_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 49654328 - 49653973
Alignment:
| Q |
1 |
aattcccttgtctttggcagagttgaggttggattcagtatttgcagaacaatggtctttcttttgctgagtttcttggnnnnnnngttcactcttattg |
100 |
Q |
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| T |
49654328 |
aattcccttgtctttggcagagttgaggttggattcagtatttgcagaacaatggtctttcttttgctgagtttcttggtttttttgttcactcttattg |
49654229 |
T |
|
| Q |
101 |
ttgtttttagctttgttggagtcctttactttccctggaagattctccggcaaaacctcggcgtgttttccagctttggcaagtttccttatcagagtct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49654228 |
ttgtttttagctttgttggagtcctttactttccctggaagattctccggcaaaacctcggcgtgttttccagctttggcaagtttccttatcagagtct |
49654129 |
T |
|
| Q |
201 |
cgagagcaacatttccggtgactgttactttattctgttgtggatcgattgttgttgtaaaaactcctgcattgcaaatgttatgaaacaccccaaaatt |
300 |
Q |
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| T |
49654128 |
cgagagcaacatttccggtgactgttactttattctgttgtggatcgattgttgttgtaaaaactcctgcattgcaaatgttatgaaacaccccaaaatt |
49654029 |
T |
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| Q |
301 |
ttgtcaccgtaacaacacaaaaatggttaattaataagaatcacatacagaaacac |
356 |
Q |
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| T |
49654028 |
ttgtcaccgtaacaacacaaaaatggttaattaataagaatcaaatacagaaacac |
49653973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 126 - 211
Target Start/End: Complemental strand, 6224763 - 6224678
Alignment:
| Q |
126 |
ttactttccctggaagattctccggcaaaacctcggcgtgttttccagctttggcaagtttccttatcagagtctcgagagcaaca |
211 |
Q |
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| T |
6224763 |
ttactttcccaggaagattctctggcaaaacctcggcgtgatttccagctttggcaagtttccttatcaaagtctcaagagcaaca |
6224678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 139 - 254
Target Start/End: Original strand, 14381849 - 14381964
Alignment:
| Q |
139 |
aagattctccggcaaaacctcggcgtgttttccagctttggcaagtttccttatcagagtctcgagagcaacatttccggtgactgttactttattctgt |
238 |
Q |
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||||||||||||| ||| ||| |||| |||||||||||| | || ||||||| || ||||| | | |||||||||| || ||||||||||| | ||| |
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| T |
14381849 |
aagattctccggccaaatctcagcgtactttccagctttgaccagcttccttaaaagggtctcaacaccaacatttccagttactgttactttttgttgt |
14381948 |
T |
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| Q |
239 |
tgtggatcgattgttg |
254 |
Q |
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|||| ||| ||||||| |
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| T |
14381949 |
tgtgaatcaattgttg |
14381964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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