View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9688_low_18 (Length: 361)

Name: NF9688_low_18
Description: NF9688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9688_low_18
NF9688_low_18
[»] chr3 (23 HSPs)
chr3 (198-361)||(28904916-28905079)
chr3 (1-139)||(28904724-28904857)
chr3 (55-107)||(28927692-28927744)
chr3 (272-350)||(54484737-54484816)
chr3 (213-323)||(7696947-7697055)
chr3 (213-321)||(45620890-45620998)
chr3 (223-347)||(22122952-22123074)
chr3 (223-357)||(29366745-29366881)
chr3 (219-357)||(30928172-30928310)
chr3 (213-350)||(46421067-46421207)
chr3 (213-350)||(26573115-26573252)
chr3 (206-243)||(829581-829618)
chr3 (213-245)||(22609754-22609786)
chr3 (213-249)||(55400986-55401022)
chr3 (213-350)||(8247719-8247859)
chr3 (278-361)||(9276317-9276399)
chr3 (213-357)||(34420668-34420813)
chr3 (213-350)||(40272844-40272982)
chr3 (213-347)||(1217077-1217210)
chr3 (215-323)||(26869696-26869803)
chr3 (278-323)||(33235584-33235629)
chr3 (213-245)||(35417904-35417936)
chr3 (213-245)||(53062026-53062058)
[»] chr1 (21 HSPs)
chr1 (213-345)||(18724582-18724714)
chr1 (223-345)||(41319843-41319965)
chr1 (223-350)||(46247985-46248112)
chr1 (213-347)||(14617026-14617161)
chr1 (223-350)||(23768352-23768479)
chr1 (220-351)||(35117797-35117930)
chr1 (213-350)||(18944631-18944771)
chr1 (223-357)||(46991803-46991937)
chr1 (213-311)||(22327088-22327185)
chr1 (206-245)||(34679356-34679395)
chr1 (213-267)||(25554837-25554891)
chr1 (213-251)||(28894662-28894700)
chr1 (213-243)||(31442516-31442546)
chr1 (213-347)||(34725133-34725266)
chr1 (213-290)||(45812627-45812705)
chr1 (213-319)||(52910206-52910312)
chr1 (213-245)||(2435924-2435956)
chr1 (213-245)||(20036209-20036241)
chr1 (213-323)||(32632617-32632726)
chr1 (213-245)||(43207478-43207510)
chr1 (213-245)||(50811928-50811960)
[»] chr7 (15 HSPs)
chr7 (213-323)||(23419734-23419843)
chr7 (213-347)||(32758226-32758359)
chr7 (215-350)||(11617620-11617756)
chr7 (213-350)||(35334848-35334984)
chr7 (213-347)||(42798634-42798769)
chr7 (272-350)||(7879663-7879741)
chr7 (278-350)||(1408488-1408560)
chr7 (213-245)||(3469316-3469348)
chr7 (213-292)||(47077943-47078023)
chr7 (213-350)||(19266416-19266553)
chr7 (213-347)||(21172044-21172177)
chr7 (213-323)||(28362205-28362314)
chr7 (213-245)||(13805068-13805100)
chr7 (213-245)||(19265781-19265813)
chr7 (214-290)||(39123857-39123933)
[»] chr4 (14 HSPs)
chr4 (207-352)||(47441560-47441705)
chr4 (212-347)||(11054183-11054317)
chr4 (223-350)||(40915805-40915931)
chr4 (213-350)||(5648224-5648361)
chr4 (223-346)||(47528566-47528687)
chr4 (213-355)||(5306691-5306833)
chr4 (206-347)||(17043429-17043567)
chr4 (213-245)||(54966987-54967019)
chr4 (272-345)||(25629074-25629147)
chr4 (213-343)||(48598864-48598993)
chr4 (213-250)||(20908770-20908807)
chr4 (213-347)||(30639345-30639479)
chr4 (213-245)||(487272-487304)
chr4 (213-245)||(42164285-42164317)
[»] chr5 (11 HSPs)
chr5 (223-321)||(27328728-27328825)
chr5 (213-348)||(43334167-43334306)
chr5 (213-350)||(19142975-19143111)
chr5 (213-357)||(1565396-1565542)
chr5 (213-290)||(209019-209096)
chr5 (213-245)||(23974746-23974778)
chr5 (212-322)||(22187249-22187359)
chr5 (206-245)||(31694245-31694284)
chr5 (213-350)||(38879546-38879686)
chr5 (213-244)||(39079904-39079935)
chr5 (213-241)||(39301089-39301117)
[»] chr8 (9 HSPs)
chr8 (223-350)||(36720772-36720899)
chr8 (213-347)||(12670285-12670418)
chr8 (224-357)||(24365084-24365218)
chr8 (213-347)||(30454132-30454265)
chr8 (272-350)||(5135321-5135399)
chr8 (213-321)||(20869560-20869666)
chr8 (215-350)||(13160669-13160804)
chr8 (278-350)||(12625920-12625993)
chr8 (213-322)||(44781567-44781675)
[»] chr2 (9 HSPs)
chr2 (213-350)||(12023951-12024088)
chr2 (223-322)||(24200686-24200784)
chr2 (203-245)||(35017773-35017815)
chr2 (213-355)||(4516378-4516520)
chr2 (278-350)||(10546193-10546266)
chr2 (278-350)||(25079749-25079822)
chr2 (213-250)||(35010513-35010550)
chr2 (272-350)||(14444754-14444831)
chr2 (213-245)||(21377210-21377242)
[»] scaffold0187 (2 HSPs)
scaffold0187 (223-347)||(10085-10207)
scaffold0187 (223-347)||(20413-20535)
[»] chr6 (4 HSPs)
chr6 (213-347)||(1354792-1354925)
chr6 (213-245)||(13905116-13905148)
chr6 (213-347)||(1346929-1347062)
chr6 (222-290)||(9161098-9161166)
[»] scaffold0258 (1 HSPs)
scaffold0258 (213-350)||(13056-13193)
[»] scaffold0168 (1 HSPs)
scaffold0168 (213-347)||(30544-30677)


Alignment Details
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 198 - 361
Target Start/End: Original strand, 28904916 - 28905079
Alignment:
Q  198 tttgcagagggagttttggcgcaacggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaag 297  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||    
T  28904916 tttgcagagggagttttggtgcaacggtaaagttgttgtcatgtgactaaaaagtcacatgtttaagtccagggaacagtctcttgtgtaaaataacaag 28905015  T
Q  298 gtaagactgtgtacattacaccaaatacgggacaccttcccggaccctgcgtaagtgggaactt 361  Q
    ||||||||||||||||||||||||||| ||||| | ||||||||||||||||||| ||||||||    
T  28905016 gtaagactgtgtacattacaccaaatatgggaccctttcccggaccctgcgtaagcgggaactt 28905079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 28904724 - 28904857
Alignment:
Q  1 aactaatgcgacactgacatggaaacataatcacatgtgttgattttggacgcaccttccatcacaagtgtcagtgctactaacaataaataaatgttac 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  28904724 aactgatgcgacactgacatggaaacataatcacatgtgttgattttggacacgccttccatcacaagtgtcagtgctactaacaataaataaatgttac 28904823  T
Q  101 tcaatcagtacagtatgaacacactatttagtggggaac 139  Q
    |||||     |||||||||||||| ||||||||||||||    
T  28904824 tcaat-----cagtatgaacacacaatttagtggggaac 28904857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 28927692 - 28927744
Alignment:
Q  55 ccttccatcacaagtgtcagtgctactaacaataaataaatgttactcaatca 107  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  28927692 ccttccatcacaggtgtcagggctactaacaataaataaatgttactcaatca 28927744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 272 - 350
Target Start/End: Original strand, 54484737 - 54484816
Alignment:
Q  272 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaat-acgggacaccttcccggaccctgcgta 350  Q
    ||||| ||||||||||||| ||||||||||| ||| ||||| ||||||||||   ||||| |||||||||||||||||||    
T  54484737 aacagcctcttgtgtaaaaaaacaaggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgta 54484816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 323
Target Start/End: Complemental strand, 7697055 - 7696947
Alignment:
Q  213 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 311  Q
    |||||||||| ||||||||||||||||||||||||||| | | |  ||| |||||| |  |||||||||||||||||   |||| |||||| ||| ||||    
T  7697055 ttggcgcaactggtaaagttgttgtcatgtgactaaaaggtcacgggttcaagtcctggaaacagtctcttgtgtaa---aacagggtaaggctgcgtac 7696959  T
Q  312 attacaccaaat 323  Q
    | ||||||||||    
T  7696958 aatacaccaaat 7696947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 213 - 321
Target Start/End: Complemental strand, 45620998 - 45620890
Alignment:
Q  213 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 312  Q
    |||||||||||||||||||||||||| |||||| ||| | | |  ||| |||| | |  ||||| ||||||||||||| |||| |||||| ||| |||||    
T  45620998 ttggcgcaacggtaaagttgttgtcacgtgactgaaaggtcacgggttcaagttctggaaacagcctcttgtgtaaaaaaacagggtaaggctgcgtaca 45620899  T
Q  313 ttacaccaa 321  Q
     ||||||||    
T  45620898 atacaccaa 45620890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 347
Target Start/End: Complemental strand, 22123074 - 22122952
Alignment:
Q  223 ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 322  Q
    |||||| |||||||||||||||| ||| | |||  ||| |||||| |  |||||||||||||||||   |||| |||||| ||| ||||| |||||||||    
T  22123074 ggtaaatttgttgtcatgtgactgaaaggtcgcgggttcaagtcctggaaacagtctcttgtgtaa---aacagggtaaggctgcgtacaatacaccaaa 22122978  T
Q  323 t-acgggacaccttcccggaccctgc 347  Q
    |   ||||| ||||||||||||||||    
T  22122977 tggtgggaccccttcccggaccctgc 22122952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 357
Target Start/End: Complemental strand, 29366881 - 29366745
Alignment:
Q  223 ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 322  Q
    ||||||||||||||||||||||||||| | | |  ||| |||||| |  ||||| ||||||| ||||| |||| |||||| ||| ||||| ||||||||     
T  29366881 ggtaaagttgttgtcatgtgactaaaaggtcacgggttcaagtcctggaaacagcctcttgtataaaa-aacagggtaaggctgcgtacaatacaccaat 29366783  T
Q  323 ta---cgggacaccttcccggaccctgcgtaagtggga 357  Q
     |    ||||| ||||||||||||||||||| ||||||    
T  29366782 aatggtgggaccccttcccggaccctgcgtatgtggga 29366745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 357
Target Start/End: Complemental strand, 30928310 - 30928172
Alignment:
Q  219 caacggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacac 318  Q
    ||||||| ||||| ||||||||||||| ||| | | |  ||| |||||| |  ||||| ||||||||||||| |||||||||||  |||||| | |||||    
T  30928310 caacggtcaagttcttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacaaggtaaggttgtgtaaaatacac 30928212  T
Q  319 caaata-cgggacaccttcccggaccctgcgtaagtggga 357  Q
    ||| |  |||||| |||||||||||||||| || ||||||    
T  30928211 caattggcgggaccccttcccggaccctgcatatgtggga 30928172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 350
Target Start/End: Complemental strand, 46421207 - 46421067
Alignment:
Q  213 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 311  Q
    |||||||||| ||||||||||||||||||||||| ||| | | |  ||| |||||| |  ||||| ||||||||||||| |||| |||||| ||| ||||    
T  46421207 ttggcgcaactggtaaagttgttgtcatgtgacttaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacagggtaaggctgcgtac 46421109  T
Q  312 attacaccaaata---cgggacaccttcccggaccctgcgta 350  Q
    | ||||||||  |    ||||| |||||||||||||||||||    
T  46421108 aatacaccaataatggtgggaccccttcccggaccctgcgta 46421067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 350
Target Start/End: Original strand, 26573115 - 26573252
Alignment:
Q  213 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 312  Q
    |||||||||||||||||||||||||| |||||| ||| | | |  ||| |||||| |  ||||| ||| ||||||||| |||| |||||| ||| |||||    
T  26573115 ttggcgcaacggtaaagttgttgtcacgtgactgaaaggtcacgggttcaagtcctggaaacagcctcctgtgtaaaa-aacagggtaaggctgcgtaca 26573213  T
Q  313 ttacaccaaat-acgggacaccttcccggaccctgcgta 350  Q
     |||||||| |   ||||| || ||||||||||||||||    
T  26573214 atacaccaattggtgggaccccatcccggaccctgcgta 26573252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 829618 - 829581
Alignment:
Q  206 gggagttttggcgcaacggtaaagttgttgtcatgtga 243  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  829618 gggagttttggcgcaacggtaaagttgttgtcacgtga 829581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 22609754 - 22609786
Alignment:
Q  213 ttggcgcaacggtaaagttgttgtcatgtgact 245  Q
    |||||||||||||||||||||||||||||||||    
T  22609754 ttggcgcaacggtaaagttgttgtcatgtgact 22609786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 55400986 - 55401022
Alignment:
Q  213 ttggcgcaacggtaaagttgttgtcatgtgactaaaa 249  Q
    ||||| |||||||||||||||||||||||||||||||    
T  55400986 ttggcacaacggtaaagttgttgtcatgtgactaaaa 55401022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 350
Target Start/End: Complemental strand, 8247859 - 8247719
Alignment:
Q  213 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 311  Q
    |||||||||| ||||||||||||||||||||||| ||| | | |  ||| |||||| |  ||||| ||||||||||||| |||| ||||||  || ||||    
T  8247859 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacagggtaaggttgcgtac 8247761  T
Q  312 attacaccaaata---cgggacaccttcccggaccctgcgta 350  Q
    | ||||||||  |    ||||| |||||||||||||||||||    
T  8247760 aatacaccaataatggtgggactccttcccggaccctgcgta 8247719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 361
Target Start/End: Original strand, 9276317 - 9276399
Alignment:
Q  278 ctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaatacgggacaccttcccggaccctgcgtaagtgggaactt 361  Q
    ||||||||||||| |||| |||||| ||| ||||| ||||||||||   |||| | ||||||||||||||||| | ||||||||    
T  9276317 ctcttgtgtaaaa-aacagggtaaggctgcgtacaatacaccaaatggtggaccctttcccggaccctgcgtatgcgggaactt 9276399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 357
Target Start/End: Complemental strand, 34420813 - 34420668
Alignment:
Q  213 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 312  Q
    |||||||||| ||||||||||||||| |||||| ||| | | |  ||| |||||| |  ||||| ||||||||||||| |||| |||||| ||| ||||     
T  34420813 ttggcgcaacagtaaagttgttgtcacgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacagggtaaggctgcgtacc 34420715  T
Q  313 ttacaccaaa--tacgggacaccttcccggaccctgcgtaagtggga 357  Q
     |||||||||     ||||| |||||||||||| |||||| ||||||    
T  34420714 atacaccaaaatggtgggaccccttcccggaccttgcgtatgtggga 34420668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 350
Target Start/End: Complemental strand, 40272982 - 40272844
Alignment:
Q  213 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 311  Q
    |||||||||| |||||||||||||||||||||||  || | |    ||| |||||| |  ||||  ||||||||||||| |||| |||||| ||| ||||    
T  40272982 ttggcgcaactggtaaagttgttgtcatgtgactggaaggtcatgggttcaagtcctggaaacaacctcttgtgtaaaa-aacagggtaaggctgcgtac 40272884  T
Q  312 attacaccaaatac-gggacaccttcccggaccctgcgta 350  Q
    | ||||||||||   ||||| |||||||||||||||||||    
T  40272883 aatacaccaaatggtgggaccccttcccggaccctgcgta 40272844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 347
Target Start/End: Original strand, 1217077 - 1217210
Alignment:
Q  213 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 311  Q
    |||||||||| ||||||||||| ||||||| ||| ||| | | |  ||| |||||| |  ||||| |||||||||||||   || |||||| ||| ||||    
T  1217077 ttggcgcaactggtaaagttgtagtcatgtcactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa---cagggtaaggctgcgtac 1217173  T
Q  312 attacaccaaata-cgggacaccttcccggaccctgc 347  Q
    | ||||||||||  |||||| ||||||||||||||||    
T  1217174 aatacaccaaatggcgggaccccttcccggaccctgc 1217210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 323
Target Start/End: Original strand, 26869696 - 26869803
Alignment:
Q  215 ggcgcaac-ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacat 313  Q
    |||||||| ||||||||||||||||||||||| ||| | | || ||| |||||| |  ||||| |||| |||||||  |||| |||||| ||| |||||     
T  26869696 ggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacaggttcaagtcctggaaacagcctctggtgtaaa--aacagggtaaggctgcgtacaa 26869793  T
Q  314 tacaccaaat 323  Q
    ||||||||||    
T  26869794 tacaccaaat 26869803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 33235584 - 33235629
Alignment:
Q  278 ctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaat 323  Q
    ||||||||||||| |||| |||||||||||||||| ||||| ||||    
T  33235584 ctcttgtgtaaaaaaacagggtaagactgtgtacaatacactaaat 33235629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 35417904 - 35417936
Alignment:
Q  213 ttggcgcaacggtaaagttgttgtcatgtgact 245  Q
    |||||||||||||||||||||| ||||||||||    
T  35417904 ttggcgcaacggtaaagttgttatcatgtgact 35417936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 53062026 - 53062058
Alignment:
Q  213 ttggcgcaacggtaaagttgttgtcatgtgact 245  Q
    |||||||| ||||||||||||||||||||||||    
T  53062026 ttggcgcatcggtaaagttgttgtcatgtgact 53062058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 213 - 345
Target Start/End: Complemental strand, 18724714 - 18724582
Alignment:
Q  213 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 312  Q
    ||||||||||||||||||||||||||||||||| ||| | | |  ||| |||||| |  ||||| ||||||||||||| |||| |||||| |||||||||    
T  18724714 ttggcgcaacggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacagggtaaggctgtgtaca 18724616  T
Q  313 ttacaccaaat-acgggacaccttcccggaccct 345  Q
     ||||||||||   ||||| ||||||||||||||    
T  18724615 atacaccaaatcttgggaccccttcccggaccct 18724582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 345
Target Start/End: Complemental strand, 41319965 - 41319843
Alignment:
Q  223 ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 322  Q
    ||||||||||||||||||||||| ||| | | || |||||||||| |  ||||||||||||||||||| |||| |||||| ||| ||||| |||||||||    
T  41319965 ggtaaagttgttgtcatgtgactgaaaggtcacaggtttaagtcctggaaacagtctcttgtgtaaaa-aacagggtaaggctgcgtacaatacaccaaa 41319867  T
Q  323 t-acgggacaccttcccggaccct 345  Q
    | | ||||| |||||||| |||||    
T  41319866 tgatgggaccccttcccgaaccct 41319843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 350
Target Start/End: Complemental strand, 46248112 - 46247985
Alignment:
Q  223 ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 322  Q
    ||||||||||||||||||||||| ||| | | |  ||| |||||  |  ||||| ||||||||||||| |||| |||||||||| ||||| |||||||||    
T  46248112 ggtaaagttgttgtcatgtgactgaaatgtcacgggttcaagtcttggaaacagcctcttgtgtaaaa-aacagggtaagactgcgtacaatacaccaaa 46248014  T
Q  323 tac-gggacaccttcccggaccctgcgta 350  Q
    |   ||||| |||||||||||||||||||    
T  46248013 tggtgggaccccttcccggaccctgcgta 46247985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 213 - 347
Target Start/End: Original strand, 14617026 - 14617161
Alignment:
Q  213 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 311  Q
    |||||||||| ||||||||||||||||||||||| ||| | | |  ||| |||||| |  ||||| ||||||||| |||||||||||||||  || ||||    
T  14617026 ttggcgcaaccggtaaagttgttgtcatgtgactgaaaggtcacgagttcaagtcctggaaacagcctcttgtgt-aaataacaaggtaaggttgcgtac 14617124  T
Q  312 attacaccaaat-acgggacaccttcccggaccctgc 347  Q
    | ||||||||||   ||||  ||||||||||||||||    
T  14617125 aatacaccaaatggtgggatcccttcccggaccctgc 14617161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 223 - 350
Target Start/End: Complemental strand, 23768479 - 23768352
Alignment:
Q  223 ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 322  Q
    |||||||||||||||||||||||  || | | || ||| |||||  |  ||||| ||||||||||||| |||| |||||| ||| ||||| |||||||||    
T  23768479 ggtaaagttgttgtcatgtgactgtaaggtcacaggttcaagtcatggaaacagcctcttgtgtaaaa-aacagggtaaggctgcgtacaatacaccaaa 23768381  T
Q  323 tac-gggacaccttcccggaccctgcgta 350  Q
    |   ||||||||||||| |||||||||||    
T  23768380 tggtgggacaccttcccagaccctgcgta 23768352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 220 - 351
Target Start/End: Complemental strand, 35117930 - 35117797
Alignment:
Q  220 aacggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacacc 319  Q
    ||||||||||||||||||| |||||| ||| | | |  ||| |||||| |  || || ||||||||||||||| || |||||| ||||||||| ||||||    
T  35117930 aacggtaaagttgttgtcacgtgactgaaaggtcacgggttcaagtcctggaaatagcctcttgtgtaaaata-cagggtaaggctgtgtacaatacacc 35117832  T
Q  320 aaatacg---ggacaccttcccggaccctgcgtaa 351  Q
    ||| | |   |||| ||||||||||||||||||||    
T  35117831 aaaaatgatgggaccccttcccggaccctgcgtaa 35117797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 350
Target Start/End: Original strand, 18944631 - 18944771
Alignment:
Q  213 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 311  Q
    |||||||||| ||||||||||||||||||||||| ||| | | || ||| ||| || |  ||||| ||||||||||||| |||| |||||| ||| ||||    
T  18944631 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacaggttcaaggcctggaaacagcctcttgtgtaaaa-aacagggtaaggctgcgtac 18944729  T
Q  312 attacaccaaata---cgggacaccttcccggaccctgcgta 350  Q
    | ||||||||  |    ||||| |||||||||||||||||||    
T  18944730 aatacaccaacaatggtgggaccccttcccggaccctgcgta 18944771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 357
Target Start/End: Original strand, 46991803 - 46991937
Alignment:
Q  223 ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 322  Q
    |||||||||||||||||||||||  || | | |  ||| |||||| |  ||||  ||||||||||||| |||| |||||| ||||||||| |||||| ||    
T  46991803 ggtaaagttgttgtcatgtgactggaaggtcacgggttcaagtcctggaaacaacctcttgtgtaaaa-aacagggtaaggctgtgtacaatacaccgaa 46991901  T
Q  323 tac-gggacaccttcccggaccctgcgtaagtggga 357  Q
    |   ||||| ||||||||||||||||||| ||||||    
T  46991902 tggtgggaccccttcccggaccctgcgtatgtggga 46991937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 311
Target Start/End: Original strand, 22327088 - 22327185
Alignment:
Q  213 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 311  Q
    |||||||||||| |||||||||||||||||||| ||| | |||  ||| |||||| |  ||||  ||||||||||||| |||| |||||| ||||||||    
T  22327088 ttggcgcaacggcaaagttgttgtcatgtgactgaaaggtcgcgggttcaagtcctggaaacaacctcttgtgtaaaa-aacagggtaaggctgtgtac 22327185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 206 - 245
Target Start/End: Complemental strand, 34679395 - 34679356
Alignment:
Q  206 gggagttttggcgcaacggtaaagttgttgtcatgtgact 245  Q
    ||||| |||||||||||||||||||| |||||||||||||    
T  34679395 gggagctttggcgcaacggtaaagttattgtcatgtgact 34679356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 267
Target Start/End: Complemental strand, 25554891 - 25554837
Alignment:
Q  213 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtcc 267  Q
    ||||||||| |||||||||||||||| |||||||||| | | | |||||||||||    
T  25554891 ttggcgcaatggtaaagttgttgtcacgtgactaaaaggccacgtgtttaagtcc 25554837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 251
Target Start/End: Complemental strand, 28894700 - 28894662
Alignment:
Q  213 ttggcgcaacggtaaagttgttgtcatgtgactaaaaag 251  Q
    |||||||||| |||||||||||||||||||||| |||||    
T  28894700 ttggcgcaacagtaaagttgttgtcatgtgactgaaaag 28894662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 243
Target Start/End: Complemental strand, 31442546 - 31442516
Alignment:
Q  213 ttggcgcaacggtaaagttgttgtcatgtga 243  Q
    |||||||||||||||||||||||||||||||    
T  31442546 ttggcgcaacggtaaagttgttgtcatgtga 31442516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 347
Target Start/End: Complemental strand, 34725266 - 34725133
Alignment:
Q  213 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 311  Q
    |||||||||| ||||||||||||||||||||||| ||| | | |  ||| |||||| |  ||||| |||||||||||   |||| |||||| ||| ||||    
T  34725266 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaa---aacagggtaaggctgcgtac 34725170  T
Q  312 attacaccaaat-acgggacaccttcccggaccctgc 347  Q
    | ||||| ||||   ||||| ||||||||||||||||    
T  34725169 aatacactaaatggtgggaccccttcccggaccctgc 34725133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 290
Target Start/End: Complemental strand, 45812705 - 45812627
Alignment:
Q  213 ttggcgcaacgg-taaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaa 290  Q
    |||||||||| | ||||||||||||||||||||| ||| | | || ||| |||||| |  |||||||||||||||||||    
T  45812705 ttggcgcaactgataaagttgttgtcatgtgactgaaaggtcacaggttcaagtcctgaaaacagtctcttgtgtaaaa 45812627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 319
Target Start/End: Original strand, 52910206 - 52910312
Alignment:
Q  213 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 312  Q
    |||| |||||||||||||||||||||||||||| ||| | | || ||| || ||  |  ||||| |||||  |||||| |||| |||| |||||||||||    
T  52910206 ttggtgcaacggtaaagttgttgtcatgtgactgaaaggtcacaggttcaactcttggaaacagcctcttaggtaaaaaaacagggtaggactgtgtaca 52910305  T
Q  313 ttacacc 319  Q
     ||||||    
T  52910306 atacacc 52910312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 245
Target Start/End: Complemental strand, 2435956 - 2435924
Alignment:
Q  213 ttggcgcaacggtaaagttgttgtcatgtgact 245  Q
    |||||||||||||||||||||||||| ||||||    
T  2435956 ttggcgcaacggtaaagttgttgtcacgtgact 2435924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 20036209 - 20036241
Alignment:
Q  213 ttggcgcaacggtaaagttgttgtcatgtgact 245  Q
    ||||||||| |||||||||||||||||||||||    
T  20036209 ttggcgcaatggtaaagttgttgtcatgtgact 20036241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 323
Target Start/End: Complemental strand, 32632726 - 32632617
Alignment:
Q  213 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 311  Q
    |||||||||| ||||||||||||||||| ||||| ||| | | |  ||| |||||| |  ||||| ||||||||||||  |||| |||||| ||| ||||    
T  32632726 ttggcgcaactggtaaagttgttgtcatatgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaa--aacagggtaaggctgcgtac 32632629  T
Q  312 attacaccaaat 323  Q
    | ||||||||||    
T  32632628 aatacaccaaat 32632617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 43207478 - 43207510
Alignment:
Q  213 ttggcgcaacggtaaagttgttgtcatgtgact 245  Q
    |||||||||||||||||||||||||| ||||||    
T  43207478 ttggcgcaacggtaaagttgttgtcacgtgact 43207510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 50811928 - 50811960
Alignment:
Q  213 ttggcgcaacggtaaagttgttgtcatgtgact 245  Q
    |||||||||||||||||||||||||| ||||||    
T  50811928 ttggcgcaacggtaaagttgttgtcacgtgact 50811960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 213 - 323
Target Start/End: Complemental strand, 23419843 - 23419734
Alignment:
Q  213 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 312  Q
    |||||||||||||||||||| |||||||||||||||| | | || ||| |||| | |  ||||| ||||||||||||| |||| |||||||||| |||||    
T  23419843 ttggcgcaacggtaaagttgctgtcatgtgactaaaaggtcacaggttcaagttctggaaacagcctcttgtgtaaaa-aacagggtaagactgcgtaca 23419745  T
Q  313 ttacaccaaat 323  Q
     ||||||||||    
T  23419744 atacaccaaat 23419734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 347
Target Start/End: Original strand, 32758226 - 32758359
Alignment:
Q  213 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 311  Q
    |||||||||| ||||||||||||||||||||||| ||| | | || ||| |||||| |  ||||| |||||||||||   |||| |||||| ||||||||    
T  32758226 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacaggttcaagtcctggaaacagcctcttgtgtaa---aacagggtaaggctgtgtac 32758322  T
Q  312 attacaccaaat-acgggacaccttcccggaccctgc 347  Q
    | ||||||||||   ||||| ||||||||||||||||    
T  32758323 aatacaccaaatggtgggaccccttcccggaccctgc 32758359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 215 - 350
Target Start/End: Complemental strand, 11617756 - 11617620
Alignment:
Q  215 ggcgcaac-ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacat 313  Q
    |||||||| ||||||||||||||||||||||| ||| | | || ||| |||||| |  ||||  ||||||||||||| |||| |||||||||| |||||     
T  11617756 ggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacaggttcaagtcctggaaacaacctcttgtgtaaaa-aacagggtaagactgcgtacaa 11617658  T
Q  314 tacaccaaat-acgggacaccttcccggaccctgcgta 350  Q
    ||||||||||   ||||| |||||| ||||||||||||    
T  11617657 tacaccaaatggtgggaccccttcctggaccctgcgta 11617620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 213 - 350
Target Start/End: Complemental strand, 35334984 - 35334848
Alignment:
Q  213 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 311  Q
    |||||||||| |||||||||||||||||||||||  || | | |  ||| |||||| |  |||||||||  |||||||| |||| |||||||||||||||    
T  35334984 ttggcgcaactggtaaagttgttgtcatgtgactggaaggtcacgagttcaagtcctggaaacagtctc--gtgtaaaa-aacagggtaagactgtgtac 35334888  T
Q  312 attacaccaaatac-gggacaccttcccggaccctgcgta 350  Q
    | |||||| |||   ||||| |||||||||||||||||||    
T  35334887 aatacaccgaatggtgggaccccttcccggaccctgcgta 35334848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 213 - 347
Target Start/End: Original strand, 42798634 - 42798769
Alignment:
Q  213 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 311  Q
    |||||||||| |||||||||||||||||||||||  || | | |  ||| |||||  |  ||||||||||||||||||| ||||||||||| ||| ||||    
T  42798634 ttggcgcaactggtaaagttgttgtcatgtgactggaaggtcacgggttcaagtcttggaaacagtctcttgtgtaaaa-aacaaggtaaggctgcgtac 42798732  T
Q  312 attacaccaaat-acgggacaccttcccggaccctgc 347  Q
    | ||||||||||   ||||| | ||||||||||||||    
T  42798733 aatacaccaaatggtgggaccctttcccggaccctgc 42798769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 350
Target Start/End: Original strand, 7879663 - 7879741
Alignment:
Q  272 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaatac-gggacaccttcccggaccctgcgta 350  Q
    |||| |||||||||||||| ||||||||||| ||| ||||| ||||||||||   ||||| |||||||||||||||||||    
T  7879663 aacaatctcttgtgtaaaa-aacaaggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgta 7879741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 278 - 350
Target Start/End: Original strand, 1408488 - 1408560
Alignment:
Q  278 ctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaatac-gggacaccttcccggaccctgcgta 350  Q
    ||||||||||||| ||||||||||| ||||||||| |||| |||||   ||||| |||||||||||||||||||    
T  1408488 ctcttgtgtaaaa-aacaaggtaaggctgtgtacaatacagcaaatggtgggaccccttcccggaccctgcgta 1408560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 245
Target Start/End: Complemental strand, 3469348 - 3469316
Alignment:
Q  213 ttggcgcaacggtaaagttgttgtcatgtgact 245  Q
    |||||||||||||||||||||||||||||||||    
T  3469348 ttggcgcaacggtaaagttgttgtcatgtgact 3469316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 47078023 - 47077943
Alignment:
Q  213 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaata 292  Q
    |||||||||| ||||||||||||||||||||||| ||| | | |  ||| |||||| |  |||||||||||||||||||||    
T  47078023 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagtctcttgtgtaaaata 47077943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 350
Target Start/End: Original strand, 19266416 - 19266553
Alignment:
Q  213 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 312  Q
    |||| |||||||||||||||||||||||||||| ||| | ||   ||| |||||| |  || || | |||| |||||| |||| |||||| ||| |||||    
T  19266416 ttggtgcaacggtaaagttgttgtcatgtgactgaaaggtcgtgggttcaagtcctgaaaatagccacttgcgtaaaa-aacagggtaaggctgcgtaca 19266514  T
Q  313 ttacaccaaa-tacgggacaccttcccggaccctgcgta 350  Q
     ||||||||| |  ||||  |||||||||||||||||||    
T  19266515 atacaccaaattgtgggatcccttcccggaccctgcgta 19266553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 347
Target Start/End: Complemental strand, 21172177 - 21172044
Alignment:
Q  213 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 311  Q
    |||||||||| ||||||||||||||||||| ||| ||| | | |  ||| |||||| |  ||||| |||||||||||   |||| |||||| ||| ||||    
T  21172177 ttggcgcaactggtaaagttgttgtcatgtaactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaa---aacagggtaaggctgcgtac 21172081  T
Q  312 attacaccaaat-acgggacaccttcccggaccctgc 347  Q
    | ||||||||||   ||||| ||||||||||||||||    
T  21172080 aatacaccaaatggtgggaccccttcccggaccctgc 21172044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 323
Target Start/End: Complemental strand, 28362314 - 28362205
Alignment:
Q  213 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 312  Q
    |||||||||||||||||||||||||||||| || ||| | | || ||| ||||||    ||| | ||||||||||||| |||  |||||| ||| |||||    
T  28362314 ttggcgcaacggtaaagttgttgtcatgtggctgaaaggtcacaggttcaagtcctagaaactgcctcttgtgtaaaa-aacttggtaaggctgcgtaca 28362216  T
Q  313 ttacaccaaat 323  Q
     ||||||||||    
T  28362215 atacaccaaat 28362205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 13805068 - 13805100
Alignment:
Q  213 ttggcgcaacggtaaagttgttgtcatgtgact 245  Q
    ||||||||| |||||||||||||||||||||||    
T  13805068 ttggcgcaatggtaaagttgttgtcatgtgact 13805100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 19265781 - 19265813
Alignment:
Q  213 ttggcgcaacggtaaagttgttgtcatgtgact 245  Q
    |||||||||||||||||||||||||| ||||||    
T  19265781 ttggcgcaacggtaaagttgttgtcacgtgact 19265813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 214 - 290
Target Start/End: Original strand, 39123857 - 39123933
Alignment:
Q  214 tggcgcaacggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaa 290  Q
    |||||||| ||||||||||||||||||||||| ||| ||| |  ||| ||||||    ||| |||||||||||||||    
T  39123857 tggcgcaatggtaaagttgttgtcatgtgactgaaacgacacgggttcaagtcctagaaacggtctcttgtgtaaaa 39123933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 207 - 352
Target Start/End: Complemental strand, 47441705 - 47441560
Alignment:
Q  207 ggagttttggcgcaacggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactg 306  Q
    |||| ||||||||||||||||||||||||||| |||||| ||| | | || ||| |||||||   ||||||||||| ||||||| | || |||||| |||    
T  47441705 ggagctttggcgcaacggtaaagttgttgtcacgtgactgaaaggtcacaggttcaagtccaagaaacagtctcttttgtaaaa-atcagggtaaggctg 47441607  T
Q  307 tgtacattacaccaaat-acgggacaccttcccggaccctgcgtaag 352  Q
    |||||| ||||||||||    |||| ||||||||||||||| |||||    
T  47441606 tgtacaatacaccaaatggttggaccccttcccggaccctgagtaag 47441560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 212 - 347
Target Start/End: Complemental strand, 11054317 - 11054183
Alignment:
Q  212 tttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgta 310  Q
    ||||||||||| ||||||||||||||||||||||| ||| | | |  ||| |||||| |  |||||||||||||||||   |||| |||||||||| |||    
T  11054317 tttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctgaaaacagtctcttgtgtaa---aacagggtaagactgcgta 11054221  T
Q  311 cattacaccaaat-acgggacaccttcccggaccctgc 347  Q
    || ||||||||||  ||| || ||||||||||||||||    
T  11054220 caatacaccaaatggcggaaccccttcccggaccctgc 11054183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 350
Target Start/End: Original strand, 40915805 - 40915931
Alignment:
Q  223 ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 322  Q
    |||||||||||||||||||||||| || | | |  ||| |||||| |  ||||| ||||||||||||  ||||||||||| ||| ||||| |||||||||    
T  40915805 ggtaaagttgttgtcatgtgactataaggtcacgggttcaagtcctggaaacagcctcttgtgtaaa--aacaaggtaaggctgcgtacaatacaccaaa 40915902  T
Q  323 t-acgggacaccttcccggaccctgcgta 350  Q
    |   ||||  |||||||||||||||||||    
T  40915903 tggtgggagcccttcccggaccctgcgta 40915931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 213 - 350
Target Start/End: Original strand, 5648224 - 5648361
Alignment:
Q  213 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 311  Q
    |||||||||| |||||||||||||||||||||||  || | | |  ||| |||||| |  ||||| |||||||||||||  ||| |||||| ||| ||||    
T  5648224 ttggcgcaactggtaaagttgttgtcatgtgactgtaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa--acagggtaaggctgcgtac 5648321  T
Q  312 attacaccaaatac-gggacaccttcccggaccctgcgta 350  Q
    | ||||||||||   ||||| |||||||||||||||||||    
T  5648322 aatacaccaaatggtgggaccccttcccggaccctgcgta 5648361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 346
Target Start/End: Complemental strand, 47528687 - 47528566
Alignment:
Q  223 ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 322  Q
    ||||||||||||||||||||||| ||| | | || ||| |||||| |  ||||| |||||||||||   |||| |||||| ||| ||||| |||||||||    
T  47528687 ggtaaagttgttgtcatgtgactgaaaggtcacaggttcaagtcctggaaacagcctcttgtgtaa---aacagggtaaggctgcgtacaatacaccaaa 47528591  T
Q  323 t-acgggacaccttcccggaccctg 346  Q
    |   ||||| |||||||||||||||    
T  47528590 tggtgggaccccttcccggaccctg 47528566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 355
Target Start/End: Complemental strand, 5306833 - 5306691
Alignment:
Q  213 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 311  Q
    |||||||||| |||||||||| |||||||||||| ||| | | |  ||| |||||| |  ||||| ||||||||||||||  || ||||||  || ||||    
T  5306833 ttggcgcaactggtaaagttgatgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaat--cagggtaaggttgcgtac 5306736  T
Q  312 attacaccaaatac-gggacaccttcccggaccctgcgtaagtgg 355  Q
    | ||||||||||   ||||| ||||||||||||||||||| ||||    
T  5306735 aatacaccaaatggtgggaccccttcccggaccctgcgtatgtgg 5306691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 347
Target Start/End: Complemental strand, 17043567 - 17043429
Alignment:
Q  206 gggagttttggcgcaacggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagact 305  Q
    |||||| |||||||||||   |||||||||||| |||||| ||| | | || ||| |||||| |  ||||| |||||||||||||| ||| |||||| ||    
T  17043567 gggagtcttggcgcaacg---aagttgttgtcaagtgactgaaaggtcacaggttcaagtcctggaaacagcctcttgtgtaaaat-acagggtaaggct 17043472  T
Q  306 gtgtacattacaccaaat-acgggacaccttcccggaccctgc 347  Q
    | ||||| ||||||||||   ||||| ||||||| ||||||||    
T  17043471 gcgtacaatacaccaaatggtgggaccccttcccagaccctgc 17043429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 54966987 - 54967019
Alignment:
Q  213 ttggcgcaacggtaaagttgttgtcatgtgact 245  Q
    |||||||||||||||||||||||||||||||||    
T  54966987 ttggcgcaacggtaaagttgttgtcatgtgact 54967019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 345
Target Start/End: Original strand, 25629074 - 25629147
Alignment:
Q  272 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaat-acgggacaccttcccggaccct 345  Q
    ||||||||||||||||||| || | |||||| ||||||||| ||||||||||   ||||| ||||||||||||||    
T  25629074 aacagtctcttgtgtaaaa-aatagggtaaggctgtgtacaatacaccaaatggtgggaccccttcccggaccct 25629147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 343
Target Start/End: Complemental strand, 48598993 - 48598864
Alignment:
Q  213 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 311  Q
    |||||||||| ||||||||||||||||||||||| ||| | | |  ||| |||||| |  ||||| |||||||||||   |||| |||||| ||| ||||    
T  48598993 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaa---aacagggtaaggctgcgtac 48598897  T
Q  312 attacaccaaat-acgggacaccttcccggacc 343  Q
    | ||||||||||   ||||| ||||||||||||    
T  48598896 aatacaccaaatggtgggaccccttcccggacc 48598864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 20908807 - 20908770
Alignment:
Q  213 ttggcgcaacggtaaagttgttgtcatgtgactaaaaa 250  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  20908807 ttggcacaacggtaaagttgttgtcatgtgactgaaaa 20908770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 347
Target Start/End: Original strand, 30639345 - 30639479
Alignment:
Q  213 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 311  Q
    |||||||||| ||||||||||||||| ||||||| ||| | | |  ||| |||||| |  ||||| ||||||||||||  |||| |||||| ||| ||||    
T  30639345 ttggcgcaactggtaaagttgttgtcttgtgactgaaaggtcactggttcaagtcctggaaacagactcttgtgtaaa--aacagggtaaggctgcgtac 30639442  T
Q  312 attacaccaaat-acgggacaccttcccggaccctgc 347  Q
    | ||||||||||   | ||| ||||||||||||||||    
T  30639443 aatacaccaaatggtgagaccccttcccggaccctgc 30639479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 245
Target Start/End: Complemental strand, 487304 - 487272
Alignment:
Q  213 ttggcgcaacggtaaagttgttgtcatgtgact 245  Q
    |||||| ||||||||||||||||||||||||||    
T  487304 ttggcgtaacggtaaagttgttgtcatgtgact 487272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 245
Target Start/End: Complemental strand, 42164317 - 42164285
Alignment:
Q  213 ttggcgcaacggtaaagttgttgtcatgtgact 245  Q
    |||||||||||||||| ||||||||||||||||    
T  42164317 ttggcgcaacggtaaaattgttgtcatgtgact 42164285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 223 - 321
Target Start/End: Original strand, 27328728 - 27328825
Alignment:
Q  223 ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaa 321  Q
    ||||||||||||||||||||||| ||| | | || ||| |||||| |  ||||||||||||||||||| |||| |||||| ||| ||||| ||||||||    
T  27328728 ggtaaagttgttgtcatgtgactgaaaggtcacaggttcaagtcctggaaacagtctcttgtgtaaaa-aacagggtaaggctgcgtacaatacaccaa 27328825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 348
Target Start/End: Original strand, 43334167 - 43334306
Alignment:
Q  213 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 311  Q
    |||||||||| ||||||||||||||||||||||| ||| | | |  ||| |||||| |  ||||| ||| ||||||||| |||| |||||| ||| ||||    
T  43334167 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcctgtgtaaaaaaacagggtaaggctgcgtac 43334266  T
Q  312 attacaccaaata---cgggacaccttcccggaccctgcg 348  Q
    | ||||||||| |    ||||| |||||||||||||||||    
T  43334267 aatacaccaaaaatggtgggaccccttcccggaccctgcg 43334306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 213 - 350
Target Start/End: Complemental strand, 19143111 - 19142975
Alignment:
Q  213 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 312  Q
    ||||||||| |||||| ||||||||| |||||||||| | | || ||| |||||| |  ||||  |||||||||||||  ||| |||||| ||| |||||    
T  19143111 ttggcgcaatggtaaaattgttgtcacgtgactaaaatgccacaggttcaagtcctggaaacaacctcttgtgtaaaa--acagggtaaggctgcgtaca 19143014  T
Q  313 ttacaccaaatac-gggacaccttcccggaccctgcgta 350  Q
     ||||||||||   ||||| |||||||||||| ||||||    
T  19143013 gtacaccaaatggtgggaccccttcccggaccatgcgta 19142975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 357
Target Start/End: Original strand, 1565396 - 1565542
Alignment:
Q  213 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 311  Q
    |||||||||| ||||||||||||||||||||||| ||| | |||  ||| |||||| |  ||||  |||||| |||||| ||||   |||| ||| ||||    
T  1565396 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcgcgggttcaagtcctggaaacaacctcttgagtaaaaaaacatattaaggctgcgtac 1565495  T
Q  312 attacaccaaat-acgggacaccttcccggaccctgcgtaagtggga 357  Q
    | | ||||||||  |||||| |||||||||||||||| || ||||||    
T  1565496 aatgcaccaaatggcgggaccccttcccggaccctgcatatgtggga 1565542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 290
Target Start/End: Complemental strand, 209096 - 209019
Alignment:
Q  213 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaa 290  Q
    |||||||| |||||||||||||||||||||||||||| | | || ||| |||||| |  ||||  |||||||||||||    
T  209096 ttggcgcagcggtaaagttgttgtcatgtgactaaaaggtcacaagttcaagtcctggcaacaacctcttgtgtaaaa 209019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 245
Target Start/End: Original strand, 23974746 - 23974778
Alignment:
Q  213 ttggcgcaacggtaaagttgttgtcatgtgact 245  Q
    |||||||||||||||||||||||||||||||||    
T  23974746 ttggcgcaacggtaaagttgttgtcatgtgact 23974778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 322
Target Start/End: Original strand, 22187249 - 22187359
Alignment:
Q  212 tttggcgcaacg-gtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgta 310  Q
    |||||||||||  |||||||||||||||| ||||| ||| | | |  |||||||||| |  ||||| ||||||||||||| |||| | |||||||| |||    
T  22187249 tttggcgcaactagtaaagttgttgtcatttgactgaaaggtcaccggtttaagtcctggaaacagcctcttgtgtaaaa-aacatgataagactgcgta 22187347  T
Q  311 cattacaccaaa 322  Q
    || |||||||||    
T  22187348 caatacaccaaa 22187359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 206 - 245
Target Start/End: Complemental strand, 31694284 - 31694245
Alignment:
Q  206 gggagttttggcgcaacggtaaagttgttgtcatgtgact 245  Q
    ||||||||||||||||| ||||||||||||||| ||||||    
T  31694284 gggagttttggcgcaacagtaaagttgttgtcacgtgact 31694245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 350
Target Start/End: Original strand, 38879546 - 38879686
Alignment:
Q  213 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 311  Q
    |||||||||| ||||||||||||||||||||||| ||| | | |  ||| |||||| |  ||||| ||||||| ||||| |||| |||||| ||| ||||    
T  38879546 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtataaaa-aacagggtaaggctgcgtac 38879644  T
Q  312 attacaccaaata---cgggacaccttcccggaccctgcgta 350  Q
    | ||||||||  |    ||||| |||||||||||||||||||    
T  38879645 aatacaccaataatggtgggaccccttcccggaccctgcgta 38879686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 244
Target Start/End: Complemental strand, 39079935 - 39079904
Alignment:
Q  213 ttggcgcaacggtaaagttgttgtcatgtgac 244  Q
    ||||||||||||||||||||||||||||||||    
T  39079935 ttggcgcaacggtaaagttgttgtcatgtgac 39079904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 241
Target Start/End: Original strand, 39301089 - 39301117
Alignment:
Q  213 ttggcgcaacggtaaagttgttgtcatgt 241  Q
    |||||||||||||||||||||||||||||    
T  39301089 ttggcgcaacggtaaagttgttgtcatgt 39301117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 223 - 350
Target Start/End: Original strand, 36720772 - 36720899
Alignment:
Q  223 ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 322  Q
    |||||||||||||||||||||||  || | | |  ||| |||||| |  ||||| ||||||||||||| |||| |||||| ||| ||||| |||||||||    
T  36720772 ggtaaagttgttgtcatgtgactggaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacagggtaaggctgcgtacaatacaccaaa 36720870  T
Q  323 tac-gggacaccttcccggaccctgcgta 350  Q
    |   ||||| |||||||||||||||||||    
T  36720871 tggtgggaccccttcccggaccctgcgta 36720899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 347
Target Start/End: Complemental strand, 12670418 - 12670285
Alignment:
Q  213 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 311  Q
    |||||||||| ||||||||||||||||||||||| ||| | | |  ||| |||||| |  ||||| |||||||||||   |||| |||||| ||| ||||    
T  12670418 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaa---aacagggtaaggctgcgtac 12670322  T
Q  312 attacaccaaat-acgggacaccttcccggaccctgc 347  Q
    | ||||||||||   ||||| ||||||||||||||||    
T  12670321 aatacaccaaatggtgggaccccttcccggaccctgc 12670285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 357
Target Start/End: Complemental strand, 24365218 - 24365084
Alignment:
Q  224 gtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaat 323  Q
    |||||||||||||||||||||||||| | | |  ||| ||| ||    ||||| ||||||||||||| | || |||||| ||| | ||| ||||||||||    
T  24365218 gtaaagttgttgtcatgtgactaaaatgtcacgggttcaagccctagaaacagcctcttgtgtaaaaaatcagggtaaggctgcgaacaatacaccaaat 24365119  T
Q  324 ac-gggacaccttcccggaccctgcgtaagtggga 357  Q
       ||||| ||||||||||||||||||| ||||||    
T  24365118 ggtgggaccccttcccggaccctgcgtatgtggga 24365084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 347
Target Start/End: Complemental strand, 30454265 - 30454132
Alignment:
Q  213 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 311  Q
    |||||||||| ||||||||||||||||||||||| ||| | | |  ||| |||||| |  ||||| |||||||||||   ||||||||||| ||| ||||    
T  30454265 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaa---aacaaggtaaggctgcgtac 30454169  T
Q  312 attacaccaaat-acgggacaccttcccggaccctgc 347  Q
      ||||||||||   ||||| ||||||||||||||||    
T  30454168 gatacaccaaatggtgggaccccttcccggaccctgc 30454132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 350
Target Start/End: Complemental strand, 5135399 - 5135321
Alignment:
Q  272 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaatac-gggacaccttcccggaccctgcgta 350  Q
    ||||| ||||||||||||| || | |||||| ||||||||| ||||||||||   ||||| |||||||||||||||||||    
T  5135399 aacagcctcttgtgtaaaa-aagagggtaaggctgtgtacaatacaccaaatggtgggaccccttcccggaccctgcgta 5135321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 321
Target Start/End: Complemental strand, 20869666 - 20869560
Alignment:
Q  213 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 311  Q
    |||||||||| ||||||||||||||||||||||| ||| | | |  ||| |||||| |  ||||| |||||||||||   |||| |||||| ||||||||    
T  20869666 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaa---aacagggtaaggctgtgtac 20869570  T
Q  312 attacaccaa 321  Q
    | ||||||||    
T  20869569 aatacaccaa 20869560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 215 - 350
Target Start/End: Original strand, 13160669 - 13160804
Alignment:
Q  215 ggcgcaac-ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacat 313  Q
    |||||||| |||||||||||||||||||||||  || | | |  ||| ||||||    ||||| |||||||||||||  ||| |||||| ||| |||||     
T  13160669 ggcgcaactggtaaagttgttgtcatgtgactgtaaggtcacgggttcaagtcctagaaacagcctcttgtgtaaaa--acagggtaaggctgcgtacaa 13160766  T
Q  314 tacaccaaatac-gggacaccttcccggaccctgcgta 350  Q
    ||||||||||   ||||| |||||||||||||||||||    
T  13160767 tacaccaaatggtgggaccccttcccggaccctgcgta 13160804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 350
Target Start/End: Original strand, 12625920 - 12625993
Alignment:
Q  278 ctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaat-acgggacaccttcccggaccctgcgta 350  Q
    ||||||||||||| |||| ||||||||||  |||| ||||||||||   ||||| || ||||||||||||||||    
T  12625920 ctcttgtgtaaaaaaacagggtaagactgcatacaatacaccaaatggtgggaccccctcccggaccctgcgta 12625993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 322
Target Start/End: Complemental strand, 44781675 - 44781567
Alignment:
Q  213 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 312  Q
    |||||||||||||||||||||||||| |||||| |||   | |  ||| |||||| |  ||||  |||||||||||||  ||| |||||| |||||||||    
T  44781675 ttggcgcaacggtaaagttgttgtcacgtgactgaaagttcacgggttcaagtcctggaaacaacctcttgtgtaaaa-gacagggtaaggctgtgtaca 44781577  T
Q  313 ttacaccaaa 322  Q
     |||||||||    
T  44781576 atacaccaaa 44781567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 213 - 350
Target Start/End: Complemental strand, 12024088 - 12023951
Alignment:
Q  213 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 311  Q
    |||||||||| ||||||||||||||||||||||| ||| | | |  ||| |||||| |  ||||| ||||||||||||  |||| |||||| ||| ||||    
T  12024088 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaaa--aacagggtaaggctgcgtac 12023991  T
Q  312 attacaccaaat-acgggacaccttcccggaccctgcgta 350  Q
    | ||||||||||   ||||| || ||||||||||||||||    
T  12023990 aatacaccaaatggtgggaccccctcccggaccctgcgta 12023951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 322
Target Start/End: Complemental strand, 24200784 - 24200686
Alignment:
Q  223 ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 322  Q
    ||||||||||||||||||||||| ||||| | |  ||| |||||| |  ||||| ||||||||||||| |||| |||||| ||| ||||| |||||||||    
T  24200784 ggtaaagttgttgtcatgtgactgaaaagtcacgggttcaagtcctggaaacagcctcttgtgtaaaa-aacagggtaaggctgcgtacaatacaccaaa 24200686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 35017773 - 35017815
Alignment:
Q  203 agagggagttttggcgcaacggtaaagttgttgtcatgtgact 245  Q
    ||||||||  |||||||||||||||||||||||||||||||||    
T  35017773 agagggagccttggcgcaacggtaaagttgttgtcatgtgact 35017815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 355
Target Start/End: Complemental strand, 4516520 - 4516378
Alignment:
Q  213 ttggcgcaacggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtaca 312  Q
    |||||||||||||||||||||||||| |||||| ||| | | ||| || |||| |    ||||| ||||||||||||| |||| || ||  ||| |||||    
T  4516520 ttggcgcaacggtaaagttgttgtcacgtgactgaaaggtcacatattcaagttctagaaacagcctcttgtgtaaaa-aacagggcaacgctgcgtaca 4516422  T
Q  313 ttacaccaaat-acgggacaccttcccggaccctgcgtaagtgg 355  Q
     |||||||| |   ||||| ||||||||||||||||||| ||||    
T  4516421 atacaccaattggtgggaccccttcccggaccctgcgtatgtgg 4516378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 350
Target Start/End: Original strand, 10546193 - 10546266
Alignment:
Q  278 ctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaatac-gggacaccttcccggaccctgcgta 350  Q
    ||||||| ||||| |||| |||||| ||| ||||| ||||||||||   ||||| |||||||||||||||||||    
T  10546193 ctcttgtataaaaaaacagggtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccctgcgta 10546266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 350
Target Start/End: Complemental strand, 25079822 - 25079749
Alignment:
Q  278 ctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaat-acgggacaccttcccggaccctgcgta 350  Q
    ||||||||||||| |||||||||||  || ||||| |||||| |||   ||||| |||||||||||||||||||    
T  25079822 ctcttgtgtaaaaaaacaaggtaaggatgcgtacaatacaccgaatggtgggaccccttcccggaccctgcgta 25079749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 35010513 - 35010550
Alignment:
Q  213 ttggcgcaacggtaaagttgttgtcatgtgactaaaaa 250  Q
    |||| |||||||||||||||||||||||||||| ||||    
T  35010513 ttggtgcaacggtaaagttgttgtcatgtgactgaaaa 35010550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 350
Target Start/End: Original strand, 14444754 - 14444831
Alignment:
Q  272 aacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaatac-gggacaccttcccggaccctgcgta 350  Q
    ||||| |||||||||||||  ||| |||||| ||||||||  ||||||||||   ||||| |||||||||||||||||||    
T  14444754 aacagcctcttgtgtaaaa--acagggtaaggctgtgtacgatacaccaaatggtgggaccccttcccggaccctgcgta 14444831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 245
Target Start/End: Complemental strand, 21377242 - 21377210
Alignment:
Q  213 ttggcgcaacggtaaagttgttgtcatgtgact 245  Q
    |||| ||||||||||||||||||||||||||||    
T  21377242 ttggagcaacggtaaagttgttgtcatgtgact 21377210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 347
Target Start/End: Complemental strand, 10207 - 10085
Alignment:
Q  223 ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 322  Q
    ||||||||||||||||||||||| ||| | | |  ||| |||||| |  ||||| |||||||||||   ||||  ||||||||| ||||| |||||||||    
T  10207 ggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaa---aacagagtaagactgcgtacaatacaccaaa 10111  T
Q  323 ta-cgggacaccttcccggaccctgc 347  Q
    ||  ||||| ||||||||||||||||    
T  10110 tagtgggaccccttcccggaccctgc 10085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 347
Target Start/End: Complemental strand, 20535 - 20413
Alignment:
Q  223 ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtacattacaccaaa 322  Q
    ||||||||||||||||||||||| ||| | | |  ||| |||||| |  ||||| |||||||||||   ||||  ||||||||| ||||| |||||||||    
T  20535 ggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagcctcttgtgtaa---aacagagtaagactgcgtacaatacaccaaa 20439  T
Q  323 ta-cgggacaccttcccggaccctgc 347  Q
    ||  ||||| ||||||||||||||||    
T  20438 tagtgggaccccttcccggaccctgc 20413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 347
Target Start/End: Complemental strand, 1354925 - 1354792
Alignment:
Q  213 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 311  Q
    |||||||||| ||||||||||||||||||||||| ||| | | |  ||| |||||| |  ||||| |||||||||||   |||| |||||| ||| ||||    
T  1354925 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcactggttcaagtcctggaaacagcctcttgtgtaa---aacagggtaaggctgcgtac 1354829  T
Q  312 attacaccaaat-acgggacaccttcccggaccctgc 347  Q
    | ||||||||||   ||||| ||||||||||||||||    
T  1354828 aatacaccaaatggtgggaccccttcccggaccctgc 1354792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 245
Target Start/End: Complemental strand, 13905148 - 13905116
Alignment:
Q  213 ttggcgcaacggtaaagttgttgtcatgtgact 245  Q
    |||||||||||||||||||||||||||||||||    
T  13905148 ttggcgcaacggtaaagttgttgtcatgtgact 13905116  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 347
Target Start/End: Original strand, 1346929 - 1347062
Alignment:
Q  213 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 311  Q
    |||||||||| ||||||||||||||||||||||| ||| | | |  ||| |||||| |  ||||| | |||||||||   |||| |||||| ||| ||||    
T  1346929 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcacgggttcaagtcctggaaacagccacttgtgtaa---aacagggtaaggctgcgtac 1347025  T
Q  312 attacaccaaat-acgggacaccttcccggaccctgc 347  Q
    | ||||||||||   ||||| ||||||||||||||||    
T  1347026 aatacaccaaatggtgggaccccttcccggaccctgc 1347062  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 290
Target Start/End: Original strand, 9161098 - 9161166
Alignment:
Q  222 cggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaa 290  Q
    |||||||||||||||||||||||| ||| | | || ||| |||||| |  ||||| |||||||||||||    
T  9161098 cggtaaagttgttgtcatgtgactgaaaggtcacaggttcaagtcctggaaacagcctcttgtgtaaaa 9161166  T

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Target: scaffold0258 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 350
Target Start/End: Complemental strand, 13193 - 13056
Alignment:
Q  213 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 311  Q
    |||||||||| ||||||||||||||||||||||| ||| | | |  ||| |||||| |  ||||| |||||| |||||  ||||||||||| ||| ||||    
T  13193 ttggcgcaaccggtaaagttgttgtcatgtgactgaaaggtcaccggttcaagtcctggaaacagcctcttgcgtaaa--aacaaggtaaggctgcgtac 13096  T
Q  312 attacaccaaat-acgggacaccttcccggaccctgcgta 350  Q
    | |||||| |||   ||||| ||||||| |||||||||||    
T  13095 aatacaccgaatggtgggaccccttcccagaccctgcgta 13056  T

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Target: scaffold0168 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 347
Target Start/End: Original strand, 30544 - 30677
Alignment:
Q  213 ttggcgcaac-ggtaaagttgttgtcatgtgactaaaaagacgcatgtttaagtccagcgaacagtctcttgtgtaaaataacaaggtaagactgtgtac 311  Q
    |||||||||| ||||||||||||||||||||||| ||| | | |  ||| |||||| |  ||||| |||||||||||   |||| |||| | ||| ||||    
T  30544 ttggcgcaactggtaaagttgttgtcatgtgactgaaaggtcaccggttcaagtcctggaaacagcctcttgtgtaa---aacagggtagggctgcgtac 30640  T
Q  312 attacaccaaat-acgggacaccttcccggaccctgc 347  Q
    | ||||||||||   ||||| ||||||||||||||||    
T  30641 aatacaccaaatggtgggaccccttcccggaccctgc 30677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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