View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9688_low_19 (Length: 359)

Name: NF9688_low_19
Description: NF9688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9688_low_19
NF9688_low_19
[»] chr7 (5 HSPs)
chr7 (144-327)||(25674892-25675075)
chr7 (145-214)||(25675746-25675815)
chr7 (145-246)||(44390691-44390791)
chr7 (145-226)||(48627763-48627844)
chr7 (145-209)||(26582629-26582693)
[»] chr2 (11 HSPs)
chr2 (145-327)||(4855226-4855408)
chr2 (145-249)||(42330918-42331022)
chr2 (145-209)||(4854473-4854537)
chr2 (144-214)||(38823853-38823923)
chr2 (145-246)||(38823220-38823321)
chr2 (145-234)||(40321142-40321231)
chr2 (151-245)||(16870585-16870679)
chr2 (144-214)||(39062899-39062969)
chr2 (151-216)||(35029859-35029924)
chr2 (145-202)||(40320241-40320298)
chr2 (145-245)||(34229043-34229143)
[»] chr1 (3 HSPs)
chr1 (144-266)||(41459386-41459508)
chr1 (145-245)||(7338767-7338867)
chr1 (145-255)||(46178120-46178230)
[»] chr6 (1 HSPs)
chr6 (76-138)||(32211057-32211119)
[»] chr8 (7 HSPs)
chr8 (145-249)||(40030495-40030599)
chr8 (145-216)||(11519350-11519421)
chr8 (145-248)||(42578709-42578812)
chr8 (145-246)||(20168982-20169082)
chr8 (145-255)||(13017742-13017852)
chr8 (145-182)||(6462647-6462684)
chr8 (144-216)||(13017084-13017156)
[»] chr4 (7 HSPs)
chr4 (145-213)||(31414076-31414144)
chr4 (145-234)||(17869644-17869733)
chr4 (144-201)||(27339715-27339772)
chr4 (145-230)||(41327702-41327787)
chr4 (145-244)||(17273625-17273724)
chr4 (177-209)||(27860987-27861019)
chr4 (145-189)||(44096013-44096057)
[»] scaffold0098 (1 HSPs)
scaffold0098 (145-229)||(52264-52348)
[»] chr5 (3 HSPs)
chr5 (151-245)||(33530668-33530762)
chr5 (145-246)||(2398221-2398321)
chr5 (144-235)||(31607255-31607346)
[»] chr3 (4 HSPs)
chr3 (145-235)||(40613055-40613145)
chr3 (145-210)||(44637768-44637833)
chr3 (145-245)||(3799832-3799931)
chr3 (145-214)||(44636976-44637047)


Alignment Details
Target: chr7 (Bit Score: 131; Significance: 7e-68; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 144 - 327
Target Start/End: Original strand, 25674892 - 25675075
Alignment:
Q  144 cgagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaa 243  Q
    |||||||||||||||||||||| |||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  25674892 cgagttcatctttgctccatttgtgtttgctcaatttactccttttcaatgtatagatgtgtgacacgtggaacaaacaaattcaaaggctatgattaaa 25674991  T
Q  244 agattagaaataagtattgttacaaaagatgtaacgcatcnnnnnnncctctcctgatacaatgcttaactttcatcttcctct 327  Q
    ||||||||||||||||||||||||||| ||||||||||||       |||||| ||||||| ||||||||||||||||||||||    
T  25674992 agattagaaataagtattgttacaaaaaatgtaacgcatctttttttcctctcttgatacagtgcttaactttcatcttcctct 25675075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 145 - 214
Target Start/End: Complemental strand, 25675815 - 25675746
Alignment:
Q  145 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtgg 214  Q
    |||||||||||||||||||||||||| | || |||||||| ||||||||| |||||||||||||| ||||    
T  25675815 gagttcatctttgctccatttatgttggctccatttactccttttcaatgtatagatgtgtgacatgtgg 25675746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 246
Target Start/End: Complemental strand, 44390791 - 44390691
Alignment:
Q  145 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 244  Q
    |||| ||||||||||||||||||| ||| || |||||||| |||| ||| || |||| ||||||| |||| | ||| ||||| ||||||||  |||||||    
T  44390791 gagtgcatctttgctccatttatgattgctccatttactcctttttaattcacagatatgtgacatgtggca-aaaaaaatctaaaggctacaattaaaa 44390693  T
Q  245 ga 246  Q
    ||    
T  44390692 ga 44390691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 226
Target Start/End: Original strand, 48627763 - 48627844
Alignment:
Q  145 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatc 226  Q
    ||||||||||||||||||||||   ||| || |||||||| |||| |||||||  |||| ||||| |||||| |||||||||    
T  48627763 gagttcatctttgctccatttaccattgctccatttactccttttgaatgcatgaatgtttgacatgtggaaaaaacaaatc 48627844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 26582693 - 26582629
Alignment:
Q  145 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgaca 209  Q
    |||||||||||| |||||||||| |||| || |||||||| |||| |||  | ||||||||||||    
T  26582693 gagttcatctttactccatttatatttgctccatttactccttttaaatttacagatgtgtgaca 26582629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 145 - 327
Target Start/End: Complemental strand, 4855408 - 4855226
Alignment:
Q  145 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 244  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4855408 gagttcatctttgctccatttatgtttgctcaatttactccttttcaatgtatagatgtgtgacacgtggaacaaacaaattcaaaggctatgattaaaa 4855309  T
Q  245 gattagaaataagtattgttacaaaagatgtaacgcatcnnnnnnncctctcctgatacaatgcttaactttcatcttcctct 327  Q
    |||||||||||||||| ||||||||| ||||||||||||       |||||| ||||||| |  |||||||||||||||||||    
T  4855308 gattagaaataagtatcgttacaaaaaatgtaacgcatctttttttcctctcttgatacagtcgttaactttcatcttcctct 4855226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 249
Target Start/End: Complemental strand, 42331022 - 42330918
Alignment:
Q  145 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 244  Q
    ||||||||||||||||||||||   ||| |||||||| |  ||||||||||||||||||||||||| ||  | ||| ||||||||||| |  ||||||||    
T  42331022 gagttcatctttgctccatttactcttgctcaatttatttcttttcaatgcatagatgtgtgacacttgacaaaaataaatccaaaggttgagattaaaa 42330923  T
Q  245 gatta 249  Q
    |||||    
T  42330922 gatta 42330918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 209
Target Start/End: Original strand, 4854473 - 4854537
Alignment:
Q  145 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgaca 209  Q
    ||||||||||||||||||||||||||   || |||||||| ||||||||| ||||||||||||||    
T  4854473 gagttcatctttgctccatttatgttgactccatttactccttttcaatgtatagatgtgtgaca 4854537  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 38823923 - 38823853
Alignment:
Q  144 cgagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtgg 214  Q
    ||||||||||||| || |||||| || |  ||||||||||||||||||||| |||||||||||||| ||||    
T  38823923 cgagttcatctttccttcatttaagtctcctcaatttactctttttcaatgtatagatgtgtgacatgtgg 38823853  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 246
Target Start/End: Original strand, 38823220 - 38823321
Alignment:
Q  145 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 244  Q
    ||||||||||||||||||||||| |||| || |||||||| |||| |||  | |||||||||||| |||||| ||| ||||  |||| | | ||||||||    
T  38823220 gagttcatctttgctccatttatatttgctccatttactccttttgaatttacagatgtgtgacatgtggaaaaaataaatgtaaagacaaagattaaaa 38823319  T
Q  245 ga 246  Q
    ||    
T  38823320 ga 38823321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 234
Target Start/End: Complemental strand, 40321231 - 40321142
Alignment:
Q  145 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggct 234  Q
    ||||||||||||||||||||||   ||| || |||||||| |||||||||||||||||  |||||| ||| | ||| |||||||| ||||    
T  40321231 gagttcatctttgctccatttagccttgctccatttactccttttcaatgcatagatgcatgacacatggtaaaaataaatccaagggct 40321142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 245
Target Start/End: Original strand, 16870585 - 16870679
Alignment:
Q  151 atctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaag 245  Q
    ||||||||||||||||   ||  |||||||| || ||||||||||||||||||||||||| | | | ||| ||||||||||| |  |||||||||    
T  16870585 atctttgctccatttagccttcctcaatttattccttttcaatgcatagatgtgtgacacatagtaaaaataaatccaaaggttgagattaaaag 16870679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 39062969 - 39062899
Alignment:
Q  144 cgagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtgg 214  Q
    ||||| |||||||| |||||||||||||||||||||||| |  ||||||  ||||||||| ||||| ||||    
T  39062969 cgagtccatctttgttccatttatgtttgttcaatttacccaatttcaagtcatagatgtatgacatgtgg 39062899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 35029924 - 35029859
Alignment:
Q  151 atctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaa 216  Q
    |||||||||||||||| ||||  ||||||||| |  ||||||  ||||||||||||||| ||||||    
T  35029924 atctttgctccatttaggtttcctcaatttaccccatttcaagtcatagatgtgtgacatgtggaa 35029859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 40320241 - 40320298
Alignment:
Q  145 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatg 202  Q
    ||||||||||||||||||||||   ||| || ||||| || |||||||||||||||||    
T  40320241 gagttcatctttgctccatttagccttgctccatttaatccttttcaatgcatagatg 40320298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 245
Target Start/End: Complemental strand, 34229143 - 34229043
Alignment:
Q  145 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 244  Q
    |||| ||||||||||||||||| | ||  ||||||||| |  ||| ||  ||||||||||||||| |||||| ||| ||| |||| ||||  ||||||||    
T  34229143 gagtccatctttgctccatttaagattcctcaatttaccccattttaagtcatagatgtgtgacatgtggaaaaaataaaaccaatggctgagattaaaa 34229044  T
Q  245 g 245  Q
    |    
T  34229043 g 34229043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 6e-56; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 144 - 266
Target Start/End: Complemental strand, 41459508 - 41459386
Alignment:
Q  144 cgagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaa 243  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41459508 cgagttcatctttgctccatttatgtttgttcaatttactcattttcaatacatagatgtgtgacacgtggaacaaacaaatccaaagactatgattaaa 41459409  T
Q  244 agattagaaataagtattgttac 266  Q
    |||||||||||||||||||||||    
T  41459408 agattagaaataagtattgttac 41459386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 145 - 245
Target Start/End: Complemental strand, 7338867 - 7338767
Alignment:
Q  145 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 244  Q
    |||| ||||||||||||||||||||||  |||||||||||  ||||||  ||||||||||| ||| |||||| ||| |||  ||| || | |||||||||    
T  7338867 gagtccatctttgctccatttatgtttcctcaatttactccatttcaagtcatagatgtgtaacatgtggaaaaaataaaatcaatggttgtgattaaaa 7338768  T
Q  245 g 245  Q
    |    
T  7338767 g 7338767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 255
Target Start/End: Complemental strand, 46178230 - 46178120
Alignment:
Q  145 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 244  Q
    |||| |||||||||||||||||||   | || |||||| | | |||| ||||||||| | |||||||||| | |||||||  ||||||||  ||||||||    
T  46178230 gagtgcatctttgctccatttatgagagctccatttacacctgttcactgcatagatttatgacacgtggcaaaaacaaaatcaaaggctcagattaaaa 46178131  T
Q  245 gattagaaata 255  Q
    ||||| |||||    
T  46178130 gattaaaaata 46178120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 32211057 - 32211119
Alignment:
Q  76 ataatgtacataatttgttttaatctttattgtttccacatgatttgttgtaagcaatgacct 138  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  32211057 ataatgtacataatttgttctaatctttattgtttccacatgatttgttgtaagcaatgacct 32211119  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 145 - 249
Target Start/End: Complemental strand, 40030599 - 40030495
Alignment:
Q  145 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 244  Q
    ||||||||||||||||||||||   ||| |||||||| || ||||||||||||||||||||||||| ||  | ||| |||||||||||||  ||||||||    
T  40030599 gagttcatctttgctccatttactcttgctcaatttattccttttcaatgcatagatgtgtgacacttgacaaaaataaatccaaaggctgagattaaaa 40030500  T
Q  245 gatta 249  Q
    |||||    
T  40030499 gatta 40030495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 11519350 - 11519421
Alignment:
Q  145 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaa 216  Q
    |||||||||||||||| ||||| |||| |||||||||| |  ||||||  ||||||||||||||| ||||||    
T  11519350 gagttcatctttgctcaatttaggtttcttcaatttaccccatttcaaatcatagatgtgtgacatgtggaa 11519421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 248
Target Start/End: Original strand, 42578709 - 42578812
Alignment:
Q  145 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 244  Q
    |||| ||||||||||||||||||||||| ||||||||| |  ||||||  ||||||||| ||||| |||| | ||| |||  ||| ||||  ||||||||    
T  42578709 gagtccatctttgctccatttatgtttgctcaatttaccccatttcaagtcatagatgtatgacatgtggcaaaaataaaatcaatggctgagattaaaa 42578808  T
Q  245 gatt 248  Q
    ||||    
T  42578809 gatt 42578812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 246
Target Start/End: Complemental strand, 20169082 - 20168982
Alignment:
Q  145 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 244  Q
    |||| ||||||||||||||||||| ||| || |||||||| |||| ||| || |||| ||||||| |||| | ||| ||||| ||||||||  |||||||    
T  20169082 gagtgcatctttgctccatttatgattgctccatttactcctttttaattcacagatatgtgacatgtggca-aaaaaaatctaaaggctacaattaaaa 20168984  T
Q  245 ga 246  Q
    ||    
T  20168983 ga 20168982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 255
Target Start/End: Complemental strand, 13017852 - 13017742
Alignment:
Q  145 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 244  Q
    |||| |||||||||||||||||||   | || |||||| | | |||| ||||||||| | ||||| |||| | |||||||  ||||||||  ||||||||    
T  13017852 gagtgcatctttgctccatttatgagagctccatttacacctgttcactgcatagatttatgacatgtggcaaaaacaaaatcaaaggctcagattaaaa 13017753  T
Q  245 gattagaaata 255  Q
    ||||| |||||    
T  13017752 gattaaaaata 13017742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 182
Target Start/End: Complemental strand, 6462684 - 6462647
Alignment:
Q  145 gagttcatctttgctccatttatgtttgttcaatttac 182  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  6462684 gagtccatctttgctccatttatgtttgctcaatttac 6462647  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 13017084 - 13017156
Alignment:
Q  144 cgagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaa 216  Q
    ||||| |||||||||||||||||||   | || |||||| | | |||| ||||||||||| ||||||||||||    
T  13017084 cgagtgcatctttgctccatttatgagagctccatttacacctgttcactgcatagatgtatgacacgtggaa 13017156  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 145 - 213
Target Start/End: Original strand, 31414076 - 31414144
Alignment:
Q  145 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtg 213  Q
    |||||||||||||||||||||||||||| || |||| ||| ||||||||||||||||||||||||||||    
T  31414076 gagttcatctttgctccatttatgtttgctccatttgctcattttcaatgcatagatgtgtgacacgtg 31414144  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 234
Target Start/End: Original strand, 17869644 - 17869733
Alignment:
Q  145 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggct 234  Q
    ||||||||||||||||||||||   ||| || |||||||| |||||||||||||||||  |||||| ||| | ||| |||||||| ||||    
T  17869644 gagttcatctttgctccatttagccttgctccatttactccttttcaatgcatagatgcatgacacatggtaaaaataaatccaagggct 17869733  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 27339715 - 27339772
Alignment:
Q  144 cgagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagat 201  Q
    |||||||||||||||||||||||   || ||| |||||||| ||| ||||||||||||    
T  27339715 cgagttcatctttgctccatttagtattcttccatttactcatttccaatgcatagat 27339772  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 41327702 - 41327787
Alignment:
Q  145 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaa 230  Q
    ||||||| |||| |||||||||  |||| |||||||| || ||||||||  ||||||||||||||  ||| | ||| |||||||||    
T  41327702 gagttcaactttactccatttagctttgctcaatttattccttttcaataaatagatgtgtgacatatggtaaaaataaatccaaa 41327787  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 17273724 - 17273625
Alignment:
Q  145 gagttcatctttgctccatttatgtttgttcaattta-ctctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaa 243  Q
    ||||| |||||||||||||||| || || |||||||| |||  || ||| |||||||||| |||||||||| | |||||||| ||| ||||  |||||||    
T  17273724 gagtttatctttgctccatttaagtgtgctcaatttatctc-attccaaagcatagatgtatgacacgtggcaaaaacaaattcaagggctgagattaaa 17273626  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 209
Target Start/End: Original strand, 27860987 - 27861019
Alignment:
Q  177 atttactctttttcaatgcatagatgtgtgaca 209  Q
    |||||||| ||||||||||||||||||||||||    
T  27860987 atttactccttttcaatgcatagatgtgtgaca 27861019  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 44096057 - 44096013
Alignment:
Q  145 gagttcatctttgctccatttatgtttgttcaatttactcttttt 189  Q
    |||| ||||||| ||| ||||||| ||||||||||||||||||||    
T  44096057 gagtccatctttactctatttatgattgttcaatttactcttttt 44096013  T

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Target: scaffold0098 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 145 - 229
Target Start/End: Original strand, 52264 - 52348
Alignment:
Q  145 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaa 229  Q
    ||||||||||||||||||||| |||||  || |||||||| |||||||||||||||||||||||| |||  | ||||||||||||    
T  52264 gagttcatctttgctccatttttgtttcctccatttactccttttcaatgcatagatgtgtgacatgtgttaaaaacaaatccaa 52348  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 245
Target Start/End: Complemental strand, 33530762 - 33530668
Alignment:
Q  151 atctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaag 245  Q
    ||||||||||||||||   ||  |||||||| || ||||||||||||||||||||||||| | | | ||| ||||||||||| |  |||||||||    
T  33530762 atctttgctccatttagccttcctcaatttattccttttcaatgcatagatgtgtgacacatagtaaaaataaatccaaaggttgagattaaaag 33530668  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 246
Target Start/End: Complemental strand, 2398321 - 2398221
Alignment:
Q  145 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 244  Q
    ||||||||||||||||||||| |||||| |  ||||||||||||| | |  | |||||||||||| |||| | || |||||| |||||||  ||||||||    
T  2398321 gagttcatctttgctccatttttgtttgcttcatttactcttttt-agtttacagatgtgtgacatgtggtaaaatcaaatctaaaggctgagattaaaa 2398223  T
Q  245 ga 246  Q
    ||    
T  2398222 ga 2398221  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 144 - 235
Target Start/End: Original strand, 31607255 - 31607346
Alignment:
Q  144 cgagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggcta 235  Q
    |||||||||||||||||||||||   ||  || |||||||| |||||||||||| |||   |||||| ||||| ||| |||||||| |||||    
T  31607255 cgagttcatctttgctccatttaacgttcctccatttactccttttcaatgcatggataaatgacacatggaaaaaataaatccaagggcta 31607346  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 235
Target Start/End: Original strand, 40613055 - 40613145
Alignment:
Q  145 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggcta 235  Q
    ||||||||||||||||||||||   ||  || ||||| || |||| ||||||||||||| ||||| |||||| ||||||||| || |||||    
T  40613055 gagttcatctttgctccatttaaccttactccatttaatccttttgaatgcatagatgtttgacatgtggaaaaaacaaatctaatggcta 40613145  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 44637833 - 44637768
Alignment:
Q  145 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacac 210  Q
    ||||||||||||||||||| || || || || |||||||| |||||||  ||||||||||||||||    
T  44637833 gagttcatctttgctccatctaagtatgctccatttactccttttcaagacatagatgtgtgacac 44637768  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 245
Target Start/End: Original strand, 3799832 - 3799931
Alignment:
Q  145 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatagatgtgtgacacgtggaacaaacaaatccaaaggctatgattaaaa 244  Q
    |||| ||||||||||||||||| | ||| ||||||||  |  ||| |||||||||||||||||||| ||| | ||| ||||| ||||| |  ||||||||    
T  3799832 gagtccatctttgctccattta-gcttgctcaatttatcccattttaatgcatagatgtgtgacacatggtaaaaataaatctaaaggttgagattaaaa 3799930  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 44636976 - 44637047
Alignment:
Q  145 gagttcatctttgctccatttatgtttgttcaatttactctttttcaatgcatag--atgtgtgacacgtgg 214  Q
    |||||||||||||||||||||   |||  || |||||||| |||| |||||||||  |||||||||||||||    
T  44636976 gagttcatctttgctccattttactttactctatttactcctttttaatgcatagatatgtgtgacacgtgg 44637047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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