View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9688_low_20 (Length: 352)
Name: NF9688_low_20
Description: NF9688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9688_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 17 - 343
Target Start/End: Original strand, 3610283 - 3610606
Alignment:
| Q |
17 |
agaaatggcatcaatgtcagcatctggttcatggagtgctaaggacaataaagcatttgaaagggcactagctgtttttgataaagacacacctgaccgt |
116 |
Q |
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| T |
3610283 |
agaaatggcatcaatgtcagcatctggttcatggagtgctaaggacaataaagcatttgaaagggcactagctgtttttgataaagacacacctgaccgt |
3610382 |
T |
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| Q |
117 |
tggtcaaatgttgctcaagctgttggtagtgggaagactcctgaggatgttaagagacactatgaacatctcctaagggatgttaggcacattgaatcag |
216 |
Q |
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| T |
3610383 |
tggtccaatgttgctcaagctgttggtggtgggaagactcctgaggatgttaagagacactatgaacacctcctaagggatgttaggcacattgaatcag |
3610482 |
T |
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| Q |
217 |
gtcaagttgcattcccaaattacaagaacaatattggaggctatgatgaagaaaaaaggtattatacattgtttcaattttttcttataaacatatatta |
316 |
Q |
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| T |
3610483 |
gtcaagttgcattcccaaattacaagaac---attggaggctatgatgaggaaaaaaggtattatacattgtttcaattttttcttataaacatatatta |
3610579 |
T |
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| Q |
317 |
tgaagcacgaatacacccacgaacacc |
343 |
Q |
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| T |
3610580 |
tgaagcacgaatacatccacgaacacc |
3610606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 27 - 244
Target Start/End: Complemental strand, 34888401 - 34888187
Alignment:
| Q |
27 |
tcaatgtcagcatctggttcatggagtgctaaggacaataaagcatttgaaagggcactagctgtttttgataaagacacacctgaccgttggtcaaatg |
126 |
Q |
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| T |
34888401 |
tcaatgtcagcttctggctcatggagtgttaaggagaataaagcctttgaaagagctttagctgtttatgacaaagacacaccagatcgttggtacaatg |
34888302 |
T |
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| Q |
127 |
ttgctcaagctgttggtagtgggaagactcctgaggatgttaagagacactatgaacatctcctaagggatgttaggcacattgaatcaggtcaagttgc |
226 |
Q |
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| T |
34888301 |
tagctcatgctgttg---gtggcaaaactcctgaggaagttaagaaacactatgaacttcttgttgaggatattaaacatattgagtcagggaaagttcc |
34888205 |
T |
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| Q |
227 |
attcccaaattacaagaa |
244 |
Q |
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||| |||||||||||||| |
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| T |
34888204 |
atttccaaattacaagaa |
34888187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 208953 - 208893
Alignment:
| Q |
60 |
gacaataaagcatttgaaagggcactagctgtttttgataaagacacacctgaccgttggt |
120 |
Q |
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||||||||||| |||||||| || |||| |||| ||| |||||||||||||| ||||||| |
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| T |
208953 |
gacaataaagcttttgaaagagctttagcagtttatgacaaagacacacctgaacgttggt |
208893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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