View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9688_low_21 (Length: 345)
Name: NF9688_low_21
Description: NF9688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9688_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 26 - 319
Target Start/End: Original strand, 17222306 - 17222599
Alignment:
| Q |
26 |
ggttaaacaatgtaacatactctaataatgtaatctgggcaatgatcaaactaatatttgaaagagaacctgaaatttattggaaataaaacaatgttga |
125 |
Q |
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| T |
17222306 |
ggttaaacaatgtaacatactctaataatgtaatctgggcaatgatcaaactaatatttgaaagagaacctgaaatttattggaaataaaacaatgttga |
17222405 |
T |
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| Q |
126 |
ataaaaaataagttttatcagccatgcatgcatgcaactaatattcacacccttttttcatacaaagcttgcactatccatagattgattccggcgaagc |
225 |
Q |
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| T |
17222406 |
ataaaaaataagttttatcagccatgcatgcatgcaactaatattcacacccttttttcatacaaagcttgcactatccatagattgattccggcgaagc |
17222505 |
T |
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| Q |
226 |
ctannnnnnnnnnnnnnatcgccgccgcagacgatggagcattcaagaccacaaataacactaaagcaagagaacaagccattatcaccaccat |
319 |
Q |
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| T |
17222506 |
ctattttttttctttttatcgccgccgcagacgatggagcattcaagaccacaaataacactaaagcaagagaacaagccattatcaccaccat |
17222599 |
T |
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