View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9688_low_23 (Length: 337)
Name: NF9688_low_23
Description: NF9688
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9688_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 14 - 321
Target Start/End: Complemental strand, 39956686 - 39956376
Alignment:
| Q |
14 |
acatcactgataacatgatactcactactattgccctaaccgtaacctgtttctgccacgaaggaacagattttccttcaaaccccttttcaacggaaat |
113 |
Q |
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| T |
39956686 |
acatcactgatagcatgatactcacgactattgccctagccgtaacctgtttctgccacgaaggaacagattttccttcaaaccctttttcaatggaaat |
39956587 |
T |
|
| Q |
114 |
ctcatcaagttgttcatcggaggtttcgacgtcacgtcgatgaggttctgaagccatgttacgatgaag---atgagtgaagagtgtggttgtgttgagt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
39956586 |
ctcatcaagttgttcatcggaggtttcgacgtcacgtcgatgaggttctgaagccatgttacgatgaagatgatgagtgaaaagtgtggttgtgttgagt |
39956487 |
T |
|
| Q |
211 |
gtttggtttttgttttgcgattgttaatgaagtcgctttcgtgactactaggttgacatgctgtgtctatttatagtaaaggggtttggagagtttagag |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
39956486 |
gtttggtttttgttttgcgattgttaatgaagtcgctttcgtgactactaggttgacatgctgtgtctatttatagtaaaggggtttcgagagtttagag |
39956387 |
T |
|
| Q |
311 |
tggtttggttt |
321 |
Q |
| |
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||||||||||| |
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| T |
39956386 |
tggtttggttt |
39956376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 39941005 - 39940766
Alignment:
| Q |
14 |
acatcactgataacatgatactcactactattgccctaaccgtaacctgtttctgccacgaaggaacagattttccttcaaaccccttttcaacggaaat |
113 |
Q |
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|||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
39941005 |
acatcactgatagcatgatactcacgactattgccctaacagtaacctgtttctgccacgaaggaacagattttccttcaaaccctttttcaatggaaat |
39940906 |
T |
|
| Q |
114 |
ctcatcaagttgttcatcggaggtttcgacgtcacgtcgatgaggttctgaagccatgttacgatgaagatgagtgaagagtgtggttgtgt-tgagtgt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
39940905 |
ctcatcaagttgttcatcggaggtttcgacgtcacgtcgatgaggttctggagccatgttacgatgaagatgagtgaagagtgtggttgtatcagagtgt |
39940806 |
T |
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| Q |
213 |
ttggtttttgttttgcgattgttaatgaagtcgctttcgt |
252 |
Q |
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| T |
39940805 |
ttggttttgattttgcgattgttaatgaagtcgctttcgt |
39940766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 131
Target Start/End: Original strand, 28750773 - 28750890
Alignment:
| Q |
14 |
acatcactgataacatgatactcactactattgccctaaccgtaacctgtttctgccacgaaggaacagattttccttcaaaccccttttcaacggaaat |
113 |
Q |
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||||||| || ||||||| |||| | | |||||||||||| || |||||||||||||||| |||||||||| ||||||||||||| ||||| || ||||| |
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| T |
28750773 |
acatcaccgacaacatgagactcgcaaatattgccctaacagtgacctgtttctgccacgtaggaacagatgttccttcaaaccctttttccacagaaat |
28750872 |
T |
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| Q |
114 |
ctcatcaagttgttcatc |
131 |
Q |
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||| || ||||||||||| |
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| T |
28750873 |
ctcctcgagttgttcatc |
28750890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 28741939 - 28742020
Alignment:
| Q |
25 |
aacatgatactcactactattgccctaaccgtaacctgtttctgccacgaaggaacagattttccttcaaaccccttttcaa |
106 |
Q |
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||||||| |||||| | || ||||||||| |||||||| |||||||||| ||||||| ||||||||||||||| ||||||| |
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| T |
28741939 |
aacatgagactcacgaataatgccctaacagtaacctgcttctgccacgtaggaacaagttttccttcaaaccctttttcaa |
28742020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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